Rmu_sc0001144.1_g000026

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001144.1
Physical Location & Seq
Forward (+)
97035 .. 97695
661 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001144.1_g000026.1.cds

Sequence Viewer

Length: 513 bp
atgggtccaagaaaggattcttggaggcacaatcaagaagttgttctttgccaagcttggatcactgttgatggtgatggttacgtcagaaagatcaaatgtacgttagatttattgtggaatcgtgtttcggaggattacaatgctcacaaactagcgggttgcataactagaacaccgtctagttgtcagactcgttggaagaaaataagtccggcatgtatgaagtggtgccaagctcttaacatggtcgaacactttcaacgaagaagaggcaaaaatatggaggatgagctcatgaatgttaaatcgacgtactatgactcggttggtcaagatttcgtgtttcagcattgttggcaatacttgaaaaatacgaaaaagttcgggaaaatgccaacaatggaaaacaccaactttagtgttcctactcctgtcgacttggatgacgttagaacacccacaaatgaggagcaaccgacttcatcaaggaaggcacgtcatcaaggatag

Protein Analysis

170

Amino Acids

19.91

Weight (kDa)

9.1

Isoelectric Point (pI)

50.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 231
AccI GTMKAC 1 cut(s) 438
AciI CCGC 1 cut(s) 158
AclWI GGATC 1 cut(s) 68
AfaI GTAC 2 cut(s) 103, 317
AgsI TTSAA 2 cut(s) 263, 370
AjiI CACGTC 1 cut(s) 500
AjuI GAANNNNNNNTTGG 2 cut(s) 33, 36
AluBI AGCT 3 cut(s) 56, 239, 295
AluI AGCT 3 cut(s) 56, 239, 295
Alw21I GWGCWC 1 cut(s) 297
AlwI GGATC 1 cut(s) 68
Asp700I GAANNNNTTC 4 cut(s) 16, 42, 258, 383
AspS9I GGNCC 1 cut(s) 5
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 5
BanI GGYRCC 1 cut(s) 231
BanII GRGCYC 1 cut(s) 297
Bbv12I GWGCWC 1 cut(s) 297
BccI CCATC 2 cut(s) 65, 71
BfaI CTAG 3 cut(s) 155, 171, 183
Bme18I GGWCC 1 cut(s) 5
BmgBI CACGTC 1 cut(s) 500
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 2 cut(s) 6, 233
BseGI GGATG 2 cut(s) 295, 451
BseRI GAGGAG 1 cut(s) 485
BshNI GGYRCC 1 cut(s) 231
BsiHKAI GWGCWC 1 cut(s) 297
BsiSI CCGG 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 297
Bsp143I GATC 2 cut(s) 60, 93
BspACI CCGC 1 cut(s) 158
BspHI TCATGA 1 cut(s) 297
BspLI GGNNCC 2 cut(s) 6, 233
BspPI GGATC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 231
BssMI GATC 2 cut(s) 60, 93
Bst4CI ACNGT 2 cut(s) 67, 180
Bst6I CTCTTC 1 cut(s) 265
BstF5I GGATG 2 cut(s) 295, 451
BstKTI GATC 2 cut(s) 63, 96
BstMBI GATC 2 cut(s) 60, 93
BstMWI GCNNNNNNNGC 1 cut(s) 358
BstNSI RCATGY 1 cut(s) 222
BtrI CACGTC 1 cut(s) 500
BtsCI GGATG 2 cut(s) 295, 451
BtsIMutI CAGTG 1 cut(s) 63
CciI TCATGA 1 cut(s) 297
Cfr13I GGNCC 1 cut(s) 5
Csp6I GTAC 2 cut(s) 102, 316
CviAII CATG 3 cut(s) 219, 247, 298
CviJI RGCY 3 cut(s) 56, 239, 295
CviKI_1 RGCY 3 cut(s) 56, 239, 295
CviQI GTAC 2 cut(s) 102, 316
DpnI GATC 2 cut(s) 62, 95
DpnII GATC 2 cut(s) 60, 93
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Ecl136II GAGCTC 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 297
Eco47I GGWCC 1 cut(s) 5
Eco53kI GAGCTC 1 cut(s) 295
EcoICRI GAGCTC 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 297
FaeI CATG 3 cut(s) 222, 250, 301
FaiI YATR 7 cut(s) 167, 220, 224, 248, 284, 299, 321
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FatI CATG 3 cut(s) 218, 246, 297
FauI CCCGC 1 cut(s) 151
FblI GTMKAC 1 cut(s) 438
FokI GGATG 2 cut(s) 302, 458
FriOI GRGCYC 1 cut(s) 297
FspBI CTAG 3 cut(s) 155, 171, 183
HapII CCGG 1 cut(s) 215
Hin1II CATG 3 cut(s) 222, 250, 301
HincII GTYRAC 1 cut(s) 439
HindII GTYRAC 1 cut(s) 439
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 4 cut(s) 17, 121, 193, 323
HpaII CCGG 1 cut(s) 215
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 1 cut(s) 439
Hpy188I TCNGA 3 cut(s) 89, 133, 192
Hpy188III TCNNGA 4 cut(s) 35, 298, 335, 388
Hpy8I GTNNAC 1 cut(s) 439
Hpy99I CGWCG 1 cut(s) 316
HpyAV CCTTC 1 cut(s) 487
HpyCH4III ACNGT 2 cut(s) 67, 180
HpyCH4IV ACGT 5 cut(s) 84, 104, 314, 450, 499
HpyCH4V TGCA 1 cut(s) 165
HpyF10VI GCNNNNNNNGC 1 cut(s) 358
HpySE526I ACGT 5 cut(s) 84, 104, 314, 450, 499
Hsp92II CATG 3 cut(s) 222, 250, 301
Kzo9I GATC 2 cut(s) 60, 93
LmnI GCTCC 1 cut(s) 472
LpnPI CCDG 2 cut(s) 228, 447
MaeI CTAG 3 cut(s) 155, 171, 183
MaeII ACGT 5 cut(s) 84, 104, 314, 450, 499
MaeIII GTNAC 1 cut(s) 80
MalI GATC 2 cut(s) 62, 95
MboI GATC 2 cut(s) 60, 93
MboII GAAGA 3 cut(s) 214, 279, 282
MhlI GDGCHC 1 cut(s) 297
MlyI GAGTC 2 cut(s) 187, 317
MmeI TCCRAC 1 cut(s) 179
MnlI CCTC 5 cut(s) 18, 127, 266, 280, 463
MroXI GAANNNNTTC 4 cut(s) 16, 42, 258, 383
MseI TTAA 2 cut(s) 243, 306
MspI CCGG 1 cut(s) 215
MwoI GCNNNNNNNGC 1 cut(s) 358
NdeII GATC 2 cut(s) 60, 93
NlaIII CATG 3 cut(s) 222, 250, 301
NlaIV GGNNCC 2 cut(s) 6, 233
NspI RCATGY 1 cut(s) 222
PagI TCATGA 1 cut(s) 297
PdmI GAANNNNTTC 4 cut(s) 16, 42, 258, 383
PfeI GAWTC 2 cut(s) 17, 121
PleI GAGTC 2 cut(s) 187, 317
PpsI GAGTC 2 cut(s) 187, 317
Psp124BI GAGCTC 1 cut(s) 297
PspN4I GGNNCC 2 cut(s) 6, 233
PspPI GGNCC 1 cut(s) 5
RsaI GTAC 2 cut(s) 103, 317
RsaNI GTAC 2 cut(s) 102, 316
SacI GAGCTC 1 cut(s) 297
SalI GTCGAC 1 cut(s) 437
SaqAI TTAA 2 cut(s) 243, 306
Sau3AI GATC 2 cut(s) 60, 93
Sau96I GGNCC 1 cut(s) 5
SchI GAGTC 2 cut(s) 187, 317
SduI GDGCHC 1 cut(s) 297
SetI ASST 8 cut(s) 58, 87, 107, 241, 297, 317, 453, 502
SinI GGWCC 1 cut(s) 5
SsiI CCGC 1 cut(s) 158
SspMI CTAG 3 cut(s) 155, 171, 183
SstI GAGCTC 1 cut(s) 297
TaaI ACNGT 2 cut(s) 67, 180
TaiI ACGT 5 cut(s) 87, 107, 317, 453, 502
TaqI TCGA 3 cut(s) 252, 311, 438
TfiI GAWTC 2 cut(s) 17, 121
Tru1I TTAA 2 cut(s) 243, 306
Tru9I TTAA 2 cut(s) 243, 306
TscAI CASTG 1 cut(s) 70
TspDTI ATGAA 3 cut(s) 239, 314, 474
TspRI CASTG 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 5
XceI RCATGY 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 438
XmnI GAANNNNTTC 4 cut(s) 16, 42, 258, 383
XspI CTAG 3 cut(s) 155, 171, 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.