Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000018.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

29552 .. 30624

Gene Structure 1073 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000018.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

atgcctaacccaagacaagagtgttggaaggacgccgaagatatagccttgtgcatagttgtagttaccgttggtgaagtcggctctaagggtactagtcaagagaaaaaaagattgtgggagcgtatacatgaagtatacgagacttgcaagcctaccggaggcgtggttagattgggaggagggtgtgacggtcgttggaaaaagattagaccggcatgccaaagatgccgtcaagctcttaacaaagcggcacttcttcgaggaagtggtgataacgccaccgacgaggtattacaagctaagtcaatatatcgtaccttagctcaaggagaggagtttacgtttgagcattgttggccaatattaaaggatacaaaaaagtttagcaatcctccgggcatgaatgttggtagctcatgttttcctacctttatcaacttagaggatgacggcactcccgcgagtgactccccaagctcttcaaatatgcatgcacgccccccaagtcaaaaagctcagaaggctgctaagaaaaaatccaggcaagacgaaacaggtgaattcttattgcaaatgcaaaggattgcagaccaaggagagcgcgatctcgaatacaggctgcgactcagggagaagactaaattagctgagcagcacgcggatgatgctcgcacaatgaaagtggatccgtcaattttcacaaaaaaaaaaggagttattgggagaggaagcaagcacagattattgagagggaggaacaaagctctagtgctggtgcatttcatcaaccctccttttctccagaagaaaatacaccacatagtgaagatgactctaacttggacctctacgtgccagttcaagagactcaatggatggggagaaattagaaatattttattggttgtactttttcacttatgtttttcaattatgaaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

314

Amino Acids

35.58

Weight (kDa)

9.68

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	127, 138
AccII	CGCG	3 cut(s)	464, 606, 662
AciI	CCGC	3 cut(s)	251, 462, 662
AclWI	GGATC	2 cut(s)	683, 696
AcoI	YGGCCR	1 cut(s)	359
AcsI	RAATTY	1 cut(s)	563
AcyI	GRCGYC	1 cut(s)	33
AdeI	CACNNNGTG	1 cut(s)	826
AfaI	GTAC	3 cut(s)	94, 319, 912
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	3 cut(s)	486, 865, 933
AhlI	ACTAGT	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	542
AluBI	AGCT	8 cut(s)	239, 302, 326, 417, 480, 518, 650, 767
AluI	AGCT	8 cut(s)	239, 302, 326, 417, 480, 518, 650, 767
Alw26I	GTCTC	2 cut(s)	137, 862
AlwI	GGATC	2 cut(s)	683, 696
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	3 cut(s)	527, 622, 655
ApoI	RAATTY	1 cut(s)	563
ArsI	GACNNNNNNTTYG	2 cut(s)	217, 249
AspLEI	GCGC	1 cut(s)	606
AspS9I	GGNCC	1 cut(s)	846
AsuC2I	CCSGG	1 cut(s)	399
AsuHPI	GGTGA	3 cut(s)	86, 284, 572
AvaII	GGWCC	1 cut(s)	846
BalI	TGGCCA	1 cut(s)	361
BamHI	GGATCC	1 cut(s)	688
BbsI	GAAGAC	1 cut(s)	644
BbvI	GCAGC	3 cut(s)	514, 609, 667
BccI	CCATC	1 cut(s)	873
BceAI	ACGGC	2 cut(s)	216, 469
BciT130I	CCWGG	1 cut(s)	544
BciVI	GTATCC	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	399
BcoDI	GTCTC	2 cut(s)	137, 862
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	2 cut(s)	96, 770
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	4 cut(s)	252, 528, 623, 656
BlpI	GCTNAGC	1 cut(s)	651
BlsI	GCNGC	4 cut(s)	253, 529, 624, 657
Bme1390I	CCNGG	2 cut(s)	399, 544
Bme18I	GGWCC	1 cut(s)	846
BmgT120I	GGNCC	1 cut(s)	846
BmiI	GGNNCC	1 cut(s)	690
BmrFI	CCNGG	2 cut(s)	399, 544
BmsI	GCATC	2 cut(s)	218, 658
BpiI	GAAGAC	1 cut(s)	644
BpmI	CTGGAG	1 cut(s)	788
Bpu10I	CCTNAGC	1 cut(s)	322
Bpu1102I	GCTNAGC	1 cut(s)	651
BpuEI	CTTGAG	1 cut(s)	312
BpuMI	CCSGG	1 cut(s)	399
BsaAI	YACGTR	1 cut(s)	855
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	595
BsaWI	WCCGGW	1 cut(s)	158
BsaXI	ACNNNNNCTCC	4 cut(s)	153, 183, 329, 359
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	859
BseBI	CCWGG	1 cut(s)	544
BseDI	CCNNGG	1 cut(s)	595
BseGI	GGATG	3 cut(s)	454, 670, 884
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	3 cut(s)	533, 642, 643
BseNI	ACTGG	1 cut(s)	859
BseRI	GAGGAG	2 cut(s)	195, 350
BseXI	GCAGC	3 cut(s)	514, 609, 667
Bsh1236I	CGCG	3 cut(s)	464, 606, 662
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	361
BsiEI	CGRYCG	1 cut(s)	196
BsiSI	CCGG	3 cut(s)	159, 215, 398
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	2 cut(s)	137, 862
BsnI	GGCC	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	607, 688
Bsp1720I	GCTNAGC	1 cut(s)	651
BspACI	CCGC	3 cut(s)	251, 462, 662
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	3 cut(s)	532, 642, 643
BspFNI	CGCG	3 cut(s)	464, 606, 662
BspLI	GGNNCC	1 cut(s)	690
BspPI	GGATC	2 cut(s)	683, 696
BspQI	GCTCTTC	1 cut(s)	487
BsrFI	RCCGGY	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	859
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	595
BssMI	GATC	2 cut(s)	607, 688
BssNAI	GTATAC	2 cut(s)	128, 139
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	595
Bst1107I	GTATAC	2 cut(s)	128, 139
Bst2UI	CCWGG	1 cut(s)	544
Bst4CI	ACNGT	2 cut(s)	70, 194
Bst6I	CTCTTC	1 cut(s)	487
BstACI	GRCGYC	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	855
BstC8I	GCNNGC	7 cut(s)	152, 220, 495, 499, 660, 673, 737
BstDEI	CTNAG	8 cut(s)	87, 303, 322, 442, 519, 531, 629, 651
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstF5I	GGATG	3 cut(s)	454, 670, 884
BstFNI	CGCG	3 cut(s)	464, 606, 662
BstHHI	GCGC	1 cut(s)	606
BstKTI	GATC	2 cut(s)	610, 691
BstMAI	GTCTC	2 cut(s)	137, 862
BstMBI	GATC	2 cut(s)	607, 688
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	4 cut(s)	228, 358, 524, 668
BstNI	CCWGG	1 cut(s)	544
BstNSI	RCATGY	2 cut(s)	222, 497
BstSCI	CCNGG	2 cut(s)	397, 542
BstUI	CGCG	3 cut(s)	464, 606, 662
BstV1I	GCAGC	3 cut(s)	514, 609, 667
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	688
BstYI	RGATCY	1 cut(s)	688
BstZ17I	GTATAC	2 cut(s)	128, 139
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	361
BtsCI	GGATG	3 cut(s)	454, 670, 884
Cac8I	GCNNGC	7 cut(s)	152, 220, 495, 499, 660, 673, 737
CfoI	GCGC	1 cut(s)	606
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	846
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	3 cut(s)	93, 318, 911
CspCI	CAANNNNNGTGG	2 cut(s)	666, 701
CviAII	CATG	5 cut(s)	131, 219, 403, 420, 494
CviQI	GTAC	3 cut(s)	93, 318, 911
DdeI	CTNAG	8 cut(s)	87, 303, 322, 442, 519, 531, 629, 651
DpnI	GATC	2 cut(s)	609, 690
DpnII	GATC	2 cut(s)	607, 688
DraIII	CACNNNGTG	1 cut(s)	826
EaeI	YGGCCR	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	487
EarI	CTCTTC	1 cut(s)	487
Eco130I	CCWWGG	1 cut(s)	595
Eco47I	GGWCC	1 cut(s)	846
EcoNI	CCTNNNNNAGG	1 cut(s)	159
EcoRI	GAATTC	1 cut(s)	563
EcoRII	CCWGG	1 cut(s)	542
EcoT14I	CCWWGG	1 cut(s)	595
EcoT22I	ATGCAT	1 cut(s)	495
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	5 cut(s)	134, 222, 406, 423, 497
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	5 cut(s)	130, 218, 402, 419, 493
FauI	CCCGC	1 cut(s)	469
FblI	GTMKAC	2 cut(s)	127, 138
Fnu4HI	GCNGC	4 cut(s)	252, 528, 623, 656
FokI	GGATG	3 cut(s)	461, 677, 891
Fsp4HI	GCNGC	4 cut(s)	252, 528, 623, 656
FspBI	CTAG	2 cut(s)	96, 770
GlaI	GCGC	1 cut(s)	605
GluI	GCNGC	4 cut(s)	252, 528, 623, 656
GsuI	CTGGAG	1 cut(s)	788
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	3 cut(s)	159, 215, 398
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	606
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	5 cut(s)	134, 222, 406, 423, 497
Hin6I	GCGC	1 cut(s)	604
HinP1I	GCGC	1 cut(s)	604
HinfI	GANTC	4 cut(s)	470, 627, 835, 870
HpaII	CCGG	3 cut(s)	159, 215, 398
HphI	GGTGA	3 cut(s)	86, 284, 572
Hpy166II	GTNNAC	3 cut(s)	128, 139, 342
Hpy188I	TCNGA	1 cut(s)	522
Hpy188III	TCNNGA	4 cut(s)	101, 611, 805, 865
Hpy8I	GTNNAC	3 cut(s)	128, 139, 342
Hpy99I	CGWCG	1 cut(s)	290
HpyAV	CCTTC	2 cut(s)	22, 517
HpyCH4III	ACNGT	2 cut(s)	70, 194
HpyCH4IV	ACGT	2 cut(s)	344, 854
HpyCH4V	TGCA	8 cut(s)	54, 150, 493, 497, 574, 580, 590, 781
HpyF10VI	GCNNNNNNNGC	4 cut(s)	228, 358, 524, 668
HpyF3I	CTNAG	8 cut(s)	87, 303, 322, 442, 519, 531, 629, 651
HpySE526I	ACGT	2 cut(s)	344, 854
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	5 cut(s)	134, 222, 406, 423, 497
HspAI	GCGC	1 cut(s)	604
Kzo9I	GATC	2 cut(s)	607, 688
LguI	GCTCTTC	1 cut(s)	487
LmnI	GCTCC	1 cut(s)	121
Lsp1109I	GCAGC	3 cut(s)	514, 609, 667
LweI	GCATC	2 cut(s)	218, 658
MaeI	CTAG	2 cut(s)	96, 770
MaeII	ACGT	2 cut(s)	344, 854
MaeIII	GTNAC	3 cut(s)	64, 188, 467
MalI	GATC	2 cut(s)	609, 690
MboI	GATC	2 cut(s)	607, 688
MboII	GAAGA	6 cut(s)	50, 251, 474, 649, 820, 841
MflI	RGATCY	1 cut(s)	688
MlsI	TGGCCA	1 cut(s)	361
MluCI	AATT	5 cut(s)	563, 644, 696, 888, 933
MluNI	TGGCCA	1 cut(s)	361
MlyI	GAGTC	4 cut(s)	464, 621, 829, 864
MmeI	TCCRAC	2 cut(s)	5, 179
Mox20I	TGGCCA	1 cut(s)	361
Mph1103I	ATGCAT	1 cut(s)	495
MscI	TGGCCA	1 cut(s)	361
MseI	TTAA	2 cut(s)	243, 368
MslI	CAYNNNNRTG	1 cut(s)	663
Msp20I	TGGCCA	1 cut(s)	361
MspI	CCGG	3 cut(s)	159, 215, 398
MspR9I	CCNGG	2 cut(s)	399, 544
MvaI	CCWGG	1 cut(s)	544
MvnI	CGCG	3 cut(s)	464, 606, 662
MwoI	GCNNNNNNNGC	4 cut(s)	228, 358, 524, 668
NciI	CCSGG	1 cut(s)	399
NdeII	GATC	2 cut(s)	607, 688
NlaIII	CATG	5 cut(s)	134, 222, 406, 423, 497
NlaIV	GGNNCC	1 cut(s)	690
NmuCI	GTSAC	2 cut(s)	188, 467
NsiI	ATGCAT	1 cut(s)	495
NspI	RCATGY	2 cut(s)	222, 497
PaeI	GCATGC	2 cut(s)	222, 497
PciSI	GCTCTTC	1 cut(s)	487
PcsI	WCGNNNNNNNCGW	1 cut(s)	285
PkrI	GCNGC	4 cut(s)	253, 529, 624, 657
PleI	GAGTC	4 cut(s)	464, 621, 829, 864
PpsI	GAGTC	4 cut(s)	464, 621, 829, 864
Ppu21I	YACGTR	1 cut(s)	855
Psp6I	CCWGG	1 cut(s)	542
PspGI	CCWGG	1 cut(s)	542
PspN4I	GGNNCC	1 cut(s)	690
PspPI	GGNCC	1 cut(s)	846
PsuI	RGATCY	1 cut(s)	688
RsaI	GTAC	3 cut(s)	94, 319, 912
RsaNI	GTAC	3 cut(s)	93, 318, 911
RseI	CAYNNNNRTG	1 cut(s)	663
SapI	GCTCTTC	1 cut(s)	487
SaqAI	TTAA	2 cut(s)	243, 368
SatI	GCNGC	4 cut(s)	252, 528, 623, 656
Sau3AI	GATC	2 cut(s)	607, 688
Sau96I	GGNCC	1 cut(s)	846
SchI	GAGTC	4 cut(s)	464, 621, 829, 864
ScrFI	CCNGG	2 cut(s)	399, 544
SfaNI	GCATC	2 cut(s)	218, 658
SinI	GGWCC	1 cut(s)	846
SmiMI	CAYNNNNRTG	1 cut(s)	663
SmlI	CTYRAG	1 cut(s)	327
SmoI	CTYRAG	1 cut(s)	327
SpeI	ACTAGT	1 cut(s)	95
SphI	GCATGC	2 cut(s)	222, 497
Sse9I	AATT	5 cut(s)	563, 644, 696, 888, 933
SsiI	CCGC	3 cut(s)	251, 462, 662
SspI	AATATT	2 cut(s)	366, 898
SspMI	CTAG	2 cut(s)	96, 770
StyD4I	CCNGG	2 cut(s)	397, 542
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	2 cut(s)	70, 194
TaiI	ACGT	2 cut(s)	347, 857
TaqI	TCGA	2 cut(s)	262, 612
TasI	AATT	5 cut(s)	563, 644, 696, 888, 933
TatI	WGTACW	1 cut(s)	910
TauI	GCSGC	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	243, 368
Tru9I	TTAA	2 cut(s)	243, 368
TseFI	GTSAC	2 cut(s)	188, 467
TseI	GCWGC	3 cut(s)	527, 622, 655
Tsp45I	GTSAC	2 cut(s)	188, 467
TspDTI	ATGAA	4 cut(s)	147, 419, 695, 775
TspGWI	ACGGA	1 cut(s)	681
VpaK11BI	GGWCC	1 cut(s)	846
XagI	CCTNNNNNAGG	1 cut(s)	159
XapI	RAATTY	1 cut(s)	563
XceI	RCATGY	2 cut(s)	222, 497
XmiI	GTMKAC	2 cut(s)	127, 138
XspI	CTAG	2 cut(s)	96, 770
Zsp2I	ATGCAT	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.