Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006399.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

30132 .. 30872

Gene Structure 741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006399.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgcctaacccaagacaagagtgttggaaggacgccgaagatatagccttgtgcatagctgtagttaccgttggtgaagacggctctaaggttactagtcaagagaaaaaaatattatgggagcgtatacatgaagtatacgagacttgcaagcctgccggaggcgtggttagattgggaggagggtgtgacggtcgttggaaaaagattagaccggcatgtgcccgatggcgtcaagctcttaacaaagcggcacttcttcgaggaagtggtgataatgccaccgacgaggaattacaagctaagtcaatatatcgtaccttagctaaaggagaggagtttacatttcaacattgttggccaatattaaaggatacaaaaaagtttagcaatcctccgggcatgaatgtcgatagctcaagttttcctatctctatcaacttagaggacgacggcagcccaagctcttcaaatgtgcatgcacgccccccaagtcaaaaagctcagaaggctgctaagaaaaaatccaggcaagacgaaacaggtgaactcttattgcaaatgcaaaggattgcagaccaaggagtgcgcgatctcgaatacaggctgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

203

Amino Acids

22.65

Weight (kDa)

8.7

Isoelectric Point (pI)

55.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	127, 138
AccII	CGCG	1 cut(s)	591
AciI	CCGC	1 cut(s)	251
AcoI	YGGCCR	1 cut(s)	359
AcyI	GRCGYC	2 cut(s)	33, 232
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	350, 471
AhlI	ACTAGT	1 cut(s)	95
AjnI	CCWGG	1 cut(s)	527
AluBI	AGCT	7 cut(s)	59, 239, 302, 326, 417, 465, 503
AluI	AGCT	7 cut(s)	59, 239, 302, 326, 417, 465, 503
Alw26I	GTCTC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	359
ApeKI	GCWGC	2 cut(s)	456, 512
AspLEI	GCGC	1 cut(s)	591
AsuC2I	CCSGG	1 cut(s)	399
AsuHPI	GGTGA	3 cut(s)	86, 284, 557
BaeGI	GKGCMC	1 cut(s)	226
BalI	TGGCCA	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	468, 499
BccI	CCATC	1 cut(s)	222
BceAI	ACGGC	2 cut(s)	97, 469
BcgI	CGANNNNNNTGC	2 cut(s)	391, 425
BciT130I	CCWGG	1 cut(s)	529
BciVI	GTATCC	1 cut(s)	367
BcnI	CCSGG	1 cut(s)	399
BcoDI	GTCTC	1 cut(s)	137
BcuI	ACTAGT	1 cut(s)	95
BfaI	CTAG	1 cut(s)	96
BfmI	CTRYAG	1 cut(s)	60
BfuI	GTATCC	1 cut(s)	367
BisI	GCNGC	3 cut(s)	252, 457, 513
BlsI	GCNGC	3 cut(s)	253, 458, 514
Bme1390I	CCNGG	2 cut(s)	399, 529
BmrFI	CCNGG	2 cut(s)	399, 529
BpiI	GAAGAC	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	322
BpuEI	CTTGAG	1 cut(s)	403
BpuMI	CCSGG	1 cut(s)	399
BsaHI	GRCGYC	2 cut(s)	33, 232
BsaJI	CCNNGG	1 cut(s)	580
BsaXI	ACNNNNNCTCC	2 cut(s)	153, 183
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse118I	RCCGGY	1 cut(s)	214
BseBI	CCWGG	1 cut(s)	529
BseDI	CCNNGG	1 cut(s)	580
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	518
BseRI	GAGGAG	2 cut(s)	195, 350
BseSI	GKGCMC	1 cut(s)	226
BseXI	GCAGC	2 cut(s)	468, 499
Bsh1236I	CGCG	1 cut(s)	591
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	361
BsiEI	CGRYCG	1 cut(s)	196
BsiSI	CCGG	3 cut(s)	159, 215, 398
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	1 cut(s)	361
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp143I	GATC	1 cut(s)	592
BspACI	CCGC	1 cut(s)	251
BspANI	GGCC	1 cut(s)	361
BspCNI	CTCAG	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	591
BspQI	GCTCTTC	1 cut(s)	472
BsrFI	RCCGGY	1 cut(s)	214
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	580
BssMI	GATC	1 cut(s)	592
BssNAI	GTATAC	2 cut(s)	128, 139
BssNI	GRCGYC	2 cut(s)	33, 232
BssT1I	CCWWGG	1 cut(s)	580
Bst1107I	GTATAC	2 cut(s)	128, 139
Bst2UI	CCWGG	1 cut(s)	529
Bst4CI	ACNGT	2 cut(s)	70, 194
Bst6I	CTCTTC	1 cut(s)	472
BstACI	GRCGYC	2 cut(s)	33, 232
BstC8I	GCNNGC	4 cut(s)	152, 156, 480, 484
BstDEI	CTNAG	6 cut(s)	87, 303, 322, 442, 504, 516
BstENI	CCTNNNNNAGG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	591
BstHHI	GCGC	1 cut(s)	591
BstKTI	GATC	1 cut(s)	595
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	592
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	2 cut(s)	462, 509
BstNI	CCWGG	1 cut(s)	529
BstNSI	RCATGY	2 cut(s)	222, 482
BstSCI	CCNGG	2 cut(s)	397, 527
BstSFI	CTRYAG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	226
BstUI	CGCG	1 cut(s)	591
BstV1I	GCAGC	2 cut(s)	468, 499
BstV2I	GAAGAC	1 cut(s)	84
BstZ17I	GTATAC	2 cut(s)	128, 139
BsuI	GTATCC	1 cut(s)	367
BsuRI	GGCC	1 cut(s)	361
Cac8I	GCNNGC	4 cut(s)	152, 156, 480, 484
CfoI	GCGC	1 cut(s)	591
Cfr10I	RCCGGY	1 cut(s)	214
CseI	GACGC	2 cut(s)	41, 221
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	4 cut(s)	131, 219, 403, 479
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	6 cut(s)	87, 303, 322, 442, 504, 516
DpnI	GATC	1 cut(s)	594
DpnII	GATC	1 cut(s)	592
EaeI	YGGCCR	1 cut(s)	359
Eam1104I	CTCTTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	472
Eco130I	CCWWGG	1 cut(s)	580
EcoNI	CCTNNNNNAGG	1 cut(s)	159
EcoRII	CCWGG	1 cut(s)	527
EcoT14I	CCWWGG	1 cut(s)	580
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	4 cut(s)	134, 222, 406, 482
FalI	AAGNNNNNCTT	2 cut(s)	240, 272
FatI	CATG	4 cut(s)	130, 218, 402, 478
FblI	GTMKAC	2 cut(s)	127, 138
Fnu4HI	GCNGC	3 cut(s)	252, 457, 513
Fsp4HI	GCNGC	3 cut(s)	252, 457, 513
FspBI	CTAG	1 cut(s)	96
GlaI	GCGC	1 cut(s)	590
GluI	GCNGC	3 cut(s)	252, 457, 513
HaeIII	GGCC	1 cut(s)	361
HapII	CCGG	3 cut(s)	159, 215, 398
HgaI	GACGC	2 cut(s)	41, 221
HhaI	GCGC	1 cut(s)	591
Hin1I	GRCGYC	2 cut(s)	33, 232
Hin1II	CATG	4 cut(s)	134, 222, 406, 482
Hin6I	GCGC	1 cut(s)	589
HinP1I	GCGC	1 cut(s)	589
HpaII	CCGG	3 cut(s)	159, 215, 398
HphI	GGTGA	3 cut(s)	86, 284, 557
Hpy166II	GTNNAC	4 cut(s)	128, 139, 342, 548
Hpy188I	TCNGA	1 cut(s)	507
Hpy188III	TCNNGA	2 cut(s)	101, 596
Hpy8I	GTNNAC	4 cut(s)	128, 139, 342, 548
Hpy99I	CGWCG	2 cut(s)	290, 455
HpyAV	CCTTC	2 cut(s)	22, 502
HpyCH4III	ACNGT	2 cut(s)	70, 194
HpyCH4V	TGCA	7 cut(s)	54, 150, 478, 482, 559, 565, 575
HpyF10VI	GCNNNNNNNGC	2 cut(s)	462, 509
HpyF3I	CTNAG	6 cut(s)	87, 303, 322, 442, 504, 516
Hsp92I	GRCGYC	2 cut(s)	33, 232
Hsp92II	CATG	4 cut(s)	134, 222, 406, 482
HspAI	GCGC	1 cut(s)	589
Kzo9I	GATC	1 cut(s)	592
LguI	GCTCTTC	1 cut(s)	472
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	8 cut(s)	168, 172, 228, 411, 514, 528, 541, 589
Lsp1109I	GCAGC	2 cut(s)	468, 499
MaeI	CTAG	1 cut(s)	96
MaeIII	GTNAC	3 cut(s)	64, 91, 188
MalI	GATC	1 cut(s)	594
MboI	GATC	1 cut(s)	592
MboII	GAAGA	4 cut(s)	50, 89, 251, 459
MhlI	GDGCHC	1 cut(s)	226
MlsI	TGGCCA	1 cut(s)	361
MluCI	AATT	1 cut(s)	293
MluNI	TGGCCA	1 cut(s)	361
MmeI	TCCRAC	2 cut(s)	5, 179
MnlI	CCTC	8 cut(s)	155, 173, 176, 257, 283, 328, 405, 439
Mox20I	TGGCCA	1 cut(s)	361
MscI	TGGCCA	1 cut(s)	361
MseI	TTAA	2 cut(s)	243, 368
Msp20I	TGGCCA	1 cut(s)	361
MspI	CCGG	3 cut(s)	159, 215, 398
MspR9I	CCNGG	2 cut(s)	399, 529
MvaI	CCWGG	1 cut(s)	529
MvnI	CGCG	1 cut(s)	591
MwoI	GCNNNNNNNGC	2 cut(s)	462, 509
NciI	CCSGG	1 cut(s)	399
NdeII	GATC	1 cut(s)	592
NlaIII	CATG	4 cut(s)	134, 222, 406, 482
NmuCI	GTSAC	1 cut(s)	188
NspI	RCATGY	2 cut(s)	222, 482
PaeI	GCATGC	1 cut(s)	482
PciSI	GCTCTTC	1 cut(s)	472
PkrI	GCNGC	3 cut(s)	253, 458, 514
Psp6I	CCWGG	1 cut(s)	527
PspGI	CCWGG	1 cut(s)	527
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
SapI	GCTCTTC	1 cut(s)	472
SaqAI	TTAA	2 cut(s)	243, 368
SatI	GCNGC	3 cut(s)	252, 457, 513
Sau3AI	GATC	1 cut(s)	592
ScrFI	CCNGG	2 cut(s)	399, 529
SduI	GDGCHC	1 cut(s)	226
SfcI	CTRYAG	1 cut(s)	60
SmlI	CTYRAG	1 cut(s)	418
SmoI	CTYRAG	1 cut(s)	418
SpeI	ACTAGT	1 cut(s)	95
SphI	GCATGC	1 cut(s)	482
Sse9I	AATT	1 cut(s)	293
SsiI	CCGC	1 cut(s)	251
SspI	AATATT	2 cut(s)	114, 366
SspMI	CTAG	1 cut(s)	96
StyD4I	CCNGG	2 cut(s)	397, 527
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	2 cut(s)	70, 194
TaqI	TCGA	3 cut(s)	262, 411, 597
TasI	AATT	1 cut(s)	293
TauI	GCSGC	1 cut(s)	254
Tru1I	TTAA	2 cut(s)	243, 368
Tru9I	TTAA	2 cut(s)	243, 368
TseFI	GTSAC	1 cut(s)	188
TseI	GCWGC	2 cut(s)	456, 512
Tsp45I	GTSAC	1 cut(s)	188
TspDTI	ATGAA	2 cut(s)	147, 419
XagI	CCTNNNNNAGG	1 cut(s)	159
XceI	RCATGY	2 cut(s)	222, 482
XmiI	GTMKAC	2 cut(s)	127, 138
XspI	CTAG	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.