Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005198.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

20391 .. 21413

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005198.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atgcctaacccaagacaagagtgttggaaggacgccaaagatatagccttgtgcatagctatagttaccgttggtgaagacggctctaagggagggtgtgacggtcattggcaaaagattagaccggcatgccaaagatggcatcaagctcttaacaaagcggcacttcttcgaggaagtggtgataacgccaccgacgaggtattacaagctaagtcaatatatcgtaccttagctaaaggagaggagtttgcgtttgagcattgttggccaatattaaaggatacaaaaaggtttagcaatcctccgggcatgaatgtcggtagctcaagttttcctacctctatcaacttagaggatgacggcactcccgcgagtgactccccaagctgttcaaatgtgcatgcacgcccccccaggattgcagaccaaggagagcgcgatctcgaatacaggctgcgactcagggaggagactaaattagctgagcagcacgcggatgatgctcgcacaatgaaagtggatccgtcaattttcacaccaaaaaaaaggagttattgggagaggaagcaagcacagattattgagcgggaggaacaaagctctagtgctggtgcatttcgtcaaccctccttttctccagaagaaaatacaccacatagtgaagatgactctaacttggacctctacgtgccagttcaagagactcaatggatggggagaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

242

Amino Acids

27.28

Weight (kDa)

5.6

Isoelectric Point (pI)

60.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	589
AccII	CGCG	3 cut(s)	374, 441, 497
AciI	CCGC	4 cut(s)	161, 372, 497, 589
AclWI	GGATC	2 cut(s)	518, 531
AcoI	YGGCCR	1 cut(s)	269
AcyI	GRCGYC	1 cut(s)	33
AdeI	CACNNNGTG	1 cut(s)	662
AfaI	GTAC	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	396, 701
AjnI	CCWGG	1 cut(s)	416
AluBI	AGCT	8 cut(s)	59, 149, 212, 236, 327, 390, 485, 603
AluI	AGCT	8 cut(s)	59, 149, 212, 236, 327, 390, 485, 603
Alw26I	GTCTC	2 cut(s)	467, 698
AlwI	GGATC	2 cut(s)	518, 531
AoxI	GGCC	1 cut(s)	269
ApeKI	GCWGC	2 cut(s)	457, 490
AspLEI	GCGC	1 cut(s)	441
AspS9I	GGNCC	1 cut(s)	682
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	2 cut(s)	86, 194
AvaII	GGWCC	1 cut(s)	682
BalI	TGGCCA	1 cut(s)	271
BamHI	GGATCC	1 cut(s)	523
BbsI	GAAGAC	1 cut(s)	84
BbvI	GCAGC	2 cut(s)	444, 502
BccI	CCATC	2 cut(s)	132, 709
BceAI	ACGGC	2 cut(s)	97, 379
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BciT130I	CCWGG	1 cut(s)	418
BciVI	GTATCC	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	2 cut(s)	467, 698
BfaI	CTAG	1 cut(s)	606
BfmI	CTRYAG	1 cut(s)	60
BfuI	GTATCC	1 cut(s)	277
BisI	GCNGC	3 cut(s)	162, 458, 491
BlpI	GCTNAGC	1 cut(s)	486
BlsI	GCNGC	3 cut(s)	163, 459, 492
Bme1390I	CCNGG	2 cut(s)	309, 418
Bme18I	GGWCC	1 cut(s)	682
BmgT120I	GGNCC	1 cut(s)	682
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	2 cut(s)	309, 418
BmsI	GCATC	2 cut(s)	151, 493
BpiI	GAAGAC	1 cut(s)	84
BpmI	CTGGAG	1 cut(s)	624
Bpu10I	CCTNAGC	1 cut(s)	232
Bpu1102I	GCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	313
BpuMI	CCSGG	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	691
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	2 cut(s)	416, 430
BsaXI	ACNNNNNCTCC	2 cut(s)	239, 269
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	1 cut(s)	695
BseBI	CCWGG	1 cut(s)	418
BseDI	CCNNGG	2 cut(s)	416, 430
BseGI	GGATG	3 cut(s)	364, 505, 720
BseMII	CTCAG	2 cut(s)	477, 478
BseNI	ACTGG	1 cut(s)	695
BseRI	GAGGAG	2 cut(s)	260, 485
BseXI	GCAGC	2 cut(s)	444, 502
Bsh1236I	CGCG	3 cut(s)	374, 441, 497
BshFI	GGCC	1 cut(s)	271
BsiSI	CCGG	2 cut(s)	125, 308
BsmAI	GTCTC	2 cut(s)	467, 698
BsnI	GGCC	1 cut(s)	271
Bsp143I	GATC	2 cut(s)	442, 523
Bsp1720I	GCTNAGC	1 cut(s)	486
BspACI	CCGC	4 cut(s)	161, 372, 497, 589
BspANI	GGCC	1 cut(s)	271
BspCNI	CTCAG	2 cut(s)	477, 478
BspFNI	CGCG	3 cut(s)	374, 441, 497
BspLI	GGNNCC	1 cut(s)	525
BspPI	GGATC	2 cut(s)	518, 531
BsrBI	CCGCTC	1 cut(s)	589
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	695
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	2 cut(s)	416, 430
BssMI	GATC	2 cut(s)	442, 523
BssNI	GRCGYC	1 cut(s)	33
BssT1I	CCWWGG	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	418
Bst4CI	ACNGT	2 cut(s)	70, 104
BstACI	GRCGYC	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	691
BstC8I	GCNNGC	6 cut(s)	130, 405, 409, 495, 508, 573
BstDEI	CTNAG	6 cut(s)	87, 213, 232, 352, 464, 486
BstF5I	GGATG	3 cut(s)	364, 505, 720
BstFNI	CGCG	3 cut(s)	374, 441, 497
BstHHI	GCGC	1 cut(s)	441
BstKTI	GATC	2 cut(s)	445, 526
BstMAI	GTCTC	2 cut(s)	467, 698
BstMBI	GATC	2 cut(s)	442, 523
BstMWI	GCNNNNNNNGC	2 cut(s)	268, 503
BstNI	CCWGG	1 cut(s)	418
BstNSI	RCATGY	2 cut(s)	132, 407
BstSCI	CCNGG	2 cut(s)	307, 416
BstSFI	CTRYAG	1 cut(s)	60
BstUI	CGCG	3 cut(s)	374, 441, 497
BstV1I	GCAGC	2 cut(s)	444, 502
BstV2I	GAAGAC	1 cut(s)	84
BstX2I	RGATCY	1 cut(s)	523
BstYI	RGATCY	1 cut(s)	523
BsuI	GTATCC	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	271
BtsCI	GGATG	3 cut(s)	364, 505, 720
Cac8I	GCNNGC	6 cut(s)	130, 405, 409, 495, 508, 573
CfoI	GCGC	1 cut(s)	441
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	1 cut(s)	682
CseI	GACGC	1 cut(s)	41
Csp6I	GTAC	1 cut(s)	228
CspCI	CAANNNNNGTGG	2 cut(s)	501, 536
CviAII	CATG	3 cut(s)	129, 313, 404
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	6 cut(s)	87, 213, 232, 352, 464, 486
DpnI	GATC	2 cut(s)	444, 525
DpnII	GATC	2 cut(s)	442, 523
DraIII	CACNNNGTG	1 cut(s)	662
EaeI	YGGCCR	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	430
Eco47I	GGWCC	1 cut(s)	682
EcoRII	CCWGG	1 cut(s)	416
EcoT14I	CCWWGG	1 cut(s)	430
ErhI	CCWWGG	1 cut(s)	430
FaeI	CATG	3 cut(s)	132, 316, 407
FaiI	YATR	8 cut(s)	44, 56, 62, 130, 223, 314, 405, 660
FalI	AAGNNNNNCTT	2 cut(s)	150, 182
FatI	CATG	3 cut(s)	128, 312, 403
FauI	CCCGC	2 cut(s)	379, 582
Fnu4HI	GCNGC	3 cut(s)	162, 458, 491
FokI	GGATG	2 cut(s)	371, 512
Fsp4HI	GCNGC	3 cut(s)	162, 458, 491
FspBI	CTAG	1 cut(s)	606
GlaI	GCGC	1 cut(s)	440
GluI	GCNGC	3 cut(s)	162, 458, 491
GsuI	CTGGAG	1 cut(s)	624
HaeIII	GGCC	1 cut(s)	271
HapII	CCGG	2 cut(s)	125, 308
HgaI	GACGC	1 cut(s)	41
HhaI	GCGC	1 cut(s)	441
Hin1I	GRCGYC	1 cut(s)	33
Hin1II	CATG	3 cut(s)	132, 316, 407
Hin6I	GCGC	1 cut(s)	439
HinP1I	GCGC	1 cut(s)	439
HincII	GTYRAC	1 cut(s)	626
HindII	GTYRAC	1 cut(s)	626
HinfI	GANTC	4 cut(s)	380, 462, 671, 706
HpaII	CCGG	2 cut(s)	125, 308
HphI	GGTGA	2 cut(s)	86, 194
Hpy166II	GTNNAC	1 cut(s)	626
Hpy188III	TCNNGA	3 cut(s)	446, 641, 701
Hpy8I	GTNNAC	1 cut(s)	626
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	22
HpyCH4III	ACNGT	2 cut(s)	70, 104
HpyCH4IV	ACGT	1 cut(s)	690
HpyCH4V	TGCA	5 cut(s)	54, 403, 407, 425, 617
HpyF10VI	GCNNNNNNNGC	2 cut(s)	268, 503
HpyF3I	CTNAG	6 cut(s)	87, 213, 232, 352, 464, 486
HpySE526I	ACGT	1 cut(s)	690
Hsp92I	GRCGYC	1 cut(s)	33
Hsp92II	CATG	3 cut(s)	132, 316, 407
HspAI	GCGC	1 cut(s)	439
Kzo9I	GATC	2 cut(s)	442, 523
LpnPI	CCDG	9 cut(s)	138, 321, 403, 430, 439, 451, 597, 654, 708
Lsp1109I	GCAGC	2 cut(s)	444, 502
LweI	GCATC	2 cut(s)	151, 493
MaeI	CTAG	1 cut(s)	606
MaeII	ACGT	1 cut(s)	690
MaeIII	GTNAC	3 cut(s)	64, 98, 377
MalI	GATC	2 cut(s)	444, 525
MbiI	CCGCTC	1 cut(s)	589
MboI	GATC	2 cut(s)	442, 523
MboII	GAAGA	4 cut(s)	89, 161, 656, 677
MflI	RGATCY	1 cut(s)	523
MlsI	TGGCCA	1 cut(s)	271
MluCI	AATT	3 cut(s)	479, 531, 724
MluNI	TGGCCA	1 cut(s)	271
MlyI	GAGTC	4 cut(s)	374, 456, 665, 700
MmeI	TCCRAC	1 cut(s)	5
Mox20I	TGGCCA	1 cut(s)	271
MscI	TGGCCA	1 cut(s)	271
MseI	TTAA	2 cut(s)	153, 278
MslI	CAYNNNNRTG	1 cut(s)	498
Msp20I	TGGCCA	1 cut(s)	271
MspI	CCGG	2 cut(s)	125, 308
MspR9I	CCNGG	2 cut(s)	309, 418
MvaI	CCWGG	1 cut(s)	418
MvnI	CGCG	3 cut(s)	374, 441, 497
MwoI	GCNNNNNNNGC	2 cut(s)	268, 503
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	2 cut(s)	442, 523
NlaIII	CATG	3 cut(s)	132, 316, 407
NlaIV	GGNNCC	1 cut(s)	525
NmuCI	GTSAC	2 cut(s)	98, 377
NspI	RCATGY	2 cut(s)	132, 407
PaeI	GCATGC	2 cut(s)	132, 407
PcsI	WCGNNNNNNNCGW	1 cut(s)	195
PkrI	GCNGC	3 cut(s)	163, 459, 492
PleI	GAGTC	4 cut(s)	374, 456, 665, 700
PpsI	GAGTC	4 cut(s)	374, 456, 665, 700
Ppu21I	YACGTR	1 cut(s)	691
Psp6I	CCWGG	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	416
PspN4I	GGNNCC	1 cut(s)	525
PspPI	GGNCC	1 cut(s)	682
PsuI	RGATCY	1 cut(s)	523
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
RseI	CAYNNNNRTG	1 cut(s)	498
SaqAI	TTAA	2 cut(s)	153, 278
SatI	GCNGC	3 cut(s)	162, 458, 491
Sau3AI	GATC	2 cut(s)	442, 523
Sau96I	GGNCC	1 cut(s)	682
SchI	GAGTC	4 cut(s)	374, 456, 665, 700
ScrFI	CCNGG	2 cut(s)	309, 418
SfaNI	GCATC	2 cut(s)	151, 493
SfcI	CTRYAG	1 cut(s)	60
SinI	GGWCC	1 cut(s)	682
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
SphI	GCATGC	2 cut(s)	132, 407
Sse9I	AATT	3 cut(s)	479, 531, 724
SsiI	CCGC	4 cut(s)	161, 372, 497, 589
SspI	AATATT	1 cut(s)	276
SspMI	CTAG	1 cut(s)	606
StyD4I	CCNGG	2 cut(s)	307, 416
StyI	CCWWGG	1 cut(s)	430
TaaI	ACNGT	2 cut(s)	70, 104
TaiI	ACGT	1 cut(s)	693
TaqI	TCGA	2 cut(s)	172, 447
TasI	AATT	3 cut(s)	479, 531, 724
TauI	GCSGC	1 cut(s)	164
Tru1I	TTAA	2 cut(s)	153, 278
Tru9I	TTAA	2 cut(s)	153, 278
TseFI	GTSAC	2 cut(s)	98, 377
TseI	GCWGC	2 cut(s)	457, 490
Tsp45I	GTSAC	2 cut(s)	98, 377
TspDTI	ATGAA	2 cut(s)	329, 530
TspGWI	ACGGA	1 cut(s)	516
VpaK11BI	GGWCC	1 cut(s)	682
XceI	RCATGY	2 cut(s)	132, 407
XspI	CTAG	1 cut(s)	606

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.