RLG00000016594

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000386
Physical Location & Seq
Forward (+)
8071895 .. 8073518
1624 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016594

Sequence Viewer

Length: 339 bp
ATGGCCCAGCTCACCTTCGCATCATTTGACCTAGATGAGTCGGTCCATATGAGAAATTTGAGTCTTTATGAACCACTCGAGTTGGAGTGGAGTGTGGACAACGATGAGGACCAATTTGATGCTCTTGCTGCGGATGAGTCCCTTGAGATCGTCGATTTCAGAGCAGAGCTCGACCCACTGGGTCGAATCGTTGGAGATCCGATCTTAGGAGATGATGGCGGCGGCGACGGCCGGGACTTTGGTCCAGTGCTTGAGAAGCCAATCGCCCTACAATATTTCGGTGAGAGAAGAAGCGGCAGCGGAGGAGGAGTCGCCAGGATTGGGCTTGAGGCGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.21

Weight (kDa)

4.06

Isoelectric Point (pI)

31.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 131, 219, 222, 294, 300
AclWI GGATC 1 cut(s) 191
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 1 cut(s) 55
AfiI CCNNNNNNNGG 2 cut(s) 206, 321
AjnI CCWGG 1 cut(s) 314
AluBI AGCT 2 cut(s) 10, 169
AluI AGCT 2 cut(s) 10, 169
Alw21I GWGCWC 1 cut(s) 171
AlwI GGATC 1 cut(s) 191
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 2 cut(s) 3, 229
ApeKI GCWGC 2 cut(s) 128, 297
ApoI RAATTY 1 cut(s) 55
AspS9I GGNCC 4 cut(s) 4, 43, 109, 242
AsuC2I CCSGG 1 cut(s) 233
AsuHPI GGTGA 2 cut(s) 4, 293
AvaI CYCGRG 1 cut(s) 77
AvaII GGWCC 3 cut(s) 43, 109, 242
BanII GRGCYC 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 171
BbvI GCAGC 2 cut(s) 115, 309
BccI CCATC 1 cut(s) 209
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 316
BcnI CCSGG 1 cut(s) 233
BfaI CTAG 1 cut(s) 32
BisI GCNGC 5 cut(s) 129, 220, 223, 295, 298
BlsI GCNGC 5 cut(s) 130, 221, 224, 296, 299
Bme1390I CCNGG 2 cut(s) 233, 316
Bme18I GGWCC 3 cut(s) 43, 109, 242
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 4 cut(s) 4, 43, 109, 242
BmrFI CCNGG 2 cut(s) 233, 316
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 2 cut(s) 29, 109
BmuI ACTGGG 1 cut(s) 188
BoxI GACNNNNGTC 1 cut(s) 240
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BpuEI CTTGAG 2 cut(s) 164, 272
BpuMI CCSGG 1 cut(s) 233
BsaXI ACNNNNNCTCC 2 cut(s) 294, 324
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 321
Bse1I ACTGG 2 cut(s) 183, 245
BseBI CCWGG 1 cut(s) 316
BseGI GGATG 1 cut(s) 139
BseLI CCNNNNNNNGG 2 cut(s) 206, 321
BseNI ACTGG 2 cut(s) 183, 245
BseRI GAGGAG 2 cut(s) 318, 321
BseX3I CGGCCG 1 cut(s) 229
BseXI GCAGC 2 cut(s) 115, 309
BseYI CCCAGC 1 cut(s) 6
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 2 cut(s) 5, 231
BsiEI CGRYCG 1 cut(s) 232
BsiHKAI GWGCWC 1 cut(s) 171
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 232
BslFI GGGAC 2 cut(s) 124, 248
BslI CCNNNNNNNGG 2 cut(s) 206, 321
BsmFI GGGAC 2 cut(s) 124, 248
BsnI GGCC 2 cut(s) 5, 231
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 1 cut(s) 171
Bsp143I GATC 3 cut(s) 147, 196, 201
BspACI CCGC 5 cut(s) 131, 219, 222, 294, 300
BspANI GGCC 2 cut(s) 5, 231
BspPI GGATC 1 cut(s) 191
BsrI ACTGG 2 cut(s) 183, 245
BssMI GATC 3 cut(s) 147, 196, 201
Bst2UI CCWGG 1 cut(s) 316
BstDEI CTNAG 1 cut(s) 205
BstF5I GGATG 1 cut(s) 139
BstKTI GATC 3 cut(s) 150, 199, 204
BstMBI GATC 3 cut(s) 147, 196, 201
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 3 cut(s) 128, 228, 256
BstNI CCWGG 1 cut(s) 316
BstPAI GACNNNNGTC 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 231, 314
BstV1I GCAGC 2 cut(s) 115, 309
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BstZI CGGCCG 1 cut(s) 229
BsuRI GGCC 2 cut(s) 5, 231
BtsCI GGATG 1 cut(s) 139
BtsIMutI CAGTG 2 cut(s) 176, 252
Cfr13I GGNCC 4 cut(s) 4, 43, 109, 242
CspCI CAANNNNNGTGG 2 cut(s) 63, 98
CviJI RGCY 6 cut(s) 5, 10, 169, 231, 259, 325
CviKI_1 RGCY 6 cut(s) 5, 10, 169, 231, 259, 325
DdeI CTNAG 1 cut(s) 205
DpnI GATC 3 cut(s) 149, 198, 203
DpnII GATC 3 cut(s) 147, 196, 201
EaeI YGGCCR 1 cut(s) 229
EagI CGGCCG 1 cut(s) 229
Ecl136II GAGCTC 1 cut(s) 169
EclXI CGGCCG 1 cut(s) 229
Eco24I GRGCYC 1 cut(s) 171
Eco47I GGWCC 3 cut(s) 43, 109, 242
Eco52I CGGCCG 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 169
EcoRII CCWGG 1 cut(s) 314
EcoT38I GRGCYC 1 cut(s) 171
FaiI YATR 3 cut(s) 48, 50, 69
FaqI GGGAC 2 cut(s) 124, 248
FauNDI CATATG 1 cut(s) 48
Fnu4HI GCNGC 5 cut(s) 129, 220, 223, 295, 298
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 171
Fsp4HI GCNGC 5 cut(s) 129, 220, 223, 295, 298
FspBI CTAG 1 cut(s) 32
GluI GCNGC 5 cut(s) 129, 220, 223, 295, 298
GsaI CCCAGC 1 cut(s) 10
HaeIII GGCC 2 cut(s) 5, 231
HapII CCGG 1 cut(s) 232
HinfI GANTC 5 cut(s) 38, 61, 137, 186, 309
HpaII CCGG 1 cut(s) 232
HphI GGTGA 2 cut(s) 4, 293
Hpy166II GTNNAC 1 cut(s) 97
Hpy188I TCNGA 2 cut(s) 161, 201
Hpy8I GTNNAC 1 cut(s) 97
Hpy99I CGWCG 2 cut(s) 155, 230
HpyAV CCTTC 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 3 cut(s) 128, 228, 256
HpyF3I CTNAG 1 cut(s) 205
Kzo9I GATC 3 cut(s) 147, 196, 201
LpnPI CCDG 6 cut(s) 20, 164, 245, 258, 301, 328
Lsp1109I GCAGC 2 cut(s) 115, 309
LweI GCATC 2 cut(s) 29, 109
MaeI CTAG 1 cut(s) 32
MalI GATC 3 cut(s) 149, 198, 203
MboI GATC 3 cut(s) 147, 196, 201
MboII GAAGA 1 cut(s) 300
MflI RGATCY 1 cut(s) 196
MhlI GDGCHC 1 cut(s) 171
MluCI AATT 2 cut(s) 55, 113
MlyI GAGTC 4 cut(s) 47, 70, 146, 318
MmeI TCCRAC 2 cut(s) 63, 172
MnlI CCTC 5 cut(s) 100, 296, 299, 322, 327
MspA1I CMGCKG 1 cut(s) 300
MspI CCGG 1 cut(s) 232
MspR9I CCNGG 2 cut(s) 233, 316
MvaI CCWGG 1 cut(s) 316
MwoI GCNNNNNNNGC 3 cut(s) 128, 228, 256
NciI CCSGG 1 cut(s) 233
NdeI CATATG 1 cut(s) 48
NdeII GATC 3 cut(s) 147, 196, 201
PaeR7I CTCGAG 1 cut(s) 77
PfeI GAWTC 1 cut(s) 186
PkrI GCNGC 5 cut(s) 130, 221, 224, 296, 299
PleI GAGTC 4 cut(s) 46, 69, 145, 317
PpsI GAGTC 4 cut(s) 46, 69, 145, 317
PshAI GACNNNNGTC 1 cut(s) 240
Psp124BI GAGCTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 314
PspFI CCCAGC 1 cut(s) 6
PspGI CCWGG 1 cut(s) 314
PspPI GGNCC 4 cut(s) 4, 43, 109, 242
PspXI VCTCGAGB 1 cut(s) 77
PsuI RGATCY 1 cut(s) 196
SacI GAGCTC 1 cut(s) 171
SatI GCNGC 5 cut(s) 129, 220, 223, 295, 298
Sau3AI GATC 3 cut(s) 147, 196, 201
Sau96I GGNCC 4 cut(s) 4, 43, 109, 242
SchI GAGTC 4 cut(s) 47, 70, 146, 318
ScrFI CCNGG 2 cut(s) 233, 316
SduI GDGCHC 1 cut(s) 171
SetI ASST 5 cut(s) 12, 17, 33, 171, 338
SfaNI GCATC 2 cut(s) 29, 109
Sfr274I CTCGAG 1 cut(s) 77
SinI GGWCC 3 cut(s) 43, 109, 242
SlaI CTCGAG 1 cut(s) 77
SmlI CTYRAG 4 cut(s) 77, 143, 251, 326
SmoI CTYRAG 4 cut(s) 77, 143, 251, 326
Sse9I AATT 2 cut(s) 55, 113
SsiI CCGC 5 cut(s) 131, 219, 222, 294, 300
SspI AATATT 1 cut(s) 275
SspMI CTAG 1 cut(s) 32
SstI GAGCTC 1 cut(s) 171
StyD4I CCNGG 2 cut(s) 231, 314
TaqI TCGA 4 cut(s) 78, 153, 171, 184
TaqII GACCGA 1 cut(s) 31
TasI AATT 2 cut(s) 55, 113
TauI GCSGC 3 cut(s) 222, 225, 297
TfiI GAWTC 1 cut(s) 186
TscAI CASTG 2 cut(s) 183, 252
TseI GCWGC 2 cut(s) 128, 297
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 2 cut(s) 183, 252
VpaK11BI GGWCC 3 cut(s) 43, 109, 242
XapI RAATTY 1 cut(s) 55
XhoI CTCGAG 1 cut(s) 77
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.