Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029270.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

5514 .. 6799

Gene Structure 1286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029270.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

atggctccaagaggggattcttggaggcacaatgaagaagttattctttgccaagcttggatcaccgttgggggtgatggttgcgtcggaaaagatcaaaagtcggatttattgtggagtcgtgtggcggaggagtacaatgatcacaaaccgggcgcattgttggcaatacttgaaaaatacggaaaagtttgggaaaatgccatcaatggaaaacataaagtggttcctaatcatgtcaaattggatgacgatggaacaaccactactgaggatgagcttccctcatcaagaaagacacgtcttcaaggacagaatgctcataagctagctaagaaaaaatccaataagcaggatgcggatggcctacgagttcaaatgcagaaatgttatgaacaaacagaacgcgagtaccaacaaaggcaaagacagtttgacgaagttcaactaattgagcaacgcgctggggatgctcgcacgatgcaggtggatccatcaattttcgccccaagaaagaggagttattgggagaggaagcaacaacaaataattgataaggaggcagaaacttcaagaatctcggaacaatctcaagatcctacaccccctgaaggaggcaacacaggattgaccacttatgatccacttggcgagacacaagcatctcttgtacgaccttctgaagaaccaccccattgtgagtcctcatcttccagactttggatttgcaaggcagcggcagacatcatcaaggctcctcaacgacttctagtgacggcctcttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

262

Amino Acids

29.64

Weight (kDa)

6.34

Isoelectric Point (pI)

52.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	475
Acc36I	ACCTGC	1 cut(s)	475
AccB7I	CCANNNNNTGG	1 cut(s)	720
AccII	CGCG	2 cut(s)	408, 462
AciI	CCGC	3 cut(s)	128, 359, 737
AclWI	GGATC	5 cut(s)	68, 485, 498, 590, 635
AcuI	CTGAAG	2 cut(s)	630, 702
AfaI	GTAC	3 cut(s)	137, 413, 672
AfiI	CCNNNNNNNGG	3 cut(s)	611, 614, 720
AflIII	ACRYGT	1 cut(s)	299
AgsI	TTSAA	5 cut(s)	176, 308, 377, 446, 573
AjiI	CACGTC	1 cut(s)	302
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AluBI	AGCT	4 cut(s)	56, 280, 328, 332
AluI	AGCT	4 cut(s)	56, 280, 328, 332
Alw26I	GTCTC	1 cut(s)	647
AlwI	GGATC	5 cut(s)	68, 485, 498, 590, 635
AoxI	GGCC	2 cut(s)	364, 777
ApeKI	GCWGC	1 cut(s)	734
ArsI	GACNNNNNNTTYG	2 cut(s)	708, 740
Asp700I	GAANNNNTTC	1 cut(s)	42
AspLEI	GCGC	2 cut(s)	158, 464
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	2 cut(s)	55, 86
AsuNHI	GCTAGC	1 cut(s)	328
BaeI	ACNNNNGTAYC	2 cut(s)	395, 428
BamHI	GGATCC	1 cut(s)	490
BbsI	GAAGAC	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	746
BccI	CCATC	5 cut(s)	71, 212, 248, 356, 502
BclI	TGATCA	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	1 cut(s)	647
BfaI	CTAG	2 cut(s)	329, 770
BfuAI	ACCTGC	1 cut(s)	475
BisI	GCNGC	2 cut(s)	735, 738
BlsI	GCNGC	2 cut(s)	736, 739
Bme1390I	CCNGG	1 cut(s)	153
BmgBI	CACGTC	1 cut(s)	302
BmiI	GGNNCC	4 cut(s)	6, 228, 492, 756
BmrFI	CCNGG	1 cut(s)	153
BmsI	GCATC	4 cut(s)	346, 460, 471, 671
BmtI	GCTAGC	1 cut(s)	332
BpiI	GAAGAC	1 cut(s)	296
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BpuEI	CTTGAG	1 cut(s)	576
BpuMI	CCSGG	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	3 cut(s)	611, 614, 720
BseGI	GGATG	5 cut(s)	253, 280, 361, 367, 475
BseLI	CCNNNNNNNGG	3 cut(s)	611, 614, 720
BseMII	CTCAG	1 cut(s)	261
BseRI	GAGGAG	3 cut(s)	146, 532, 747
BseXI	GCAGC	1 cut(s)	746
BseYI	CCCAGC	1 cut(s)	464
Bsh1236I	CGCG	2 cut(s)	408, 462
BshFI	GGCC	2 cut(s)	366, 779
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	3 cut(s)	611, 614, 720
BsmAI	GTCTC	1 cut(s)	647
BsmI	GAATGC	1 cut(s)	322
BsnI	GGCC	2 cut(s)	366, 779
Bsp143I	GATC	6 cut(s)	60, 94, 142, 490, 595, 640
BspACI	CCGC	3 cut(s)	128, 359, 737
BspANI	GGCC	2 cut(s)	366, 779
BspCNI	CTCAG	1 cut(s)	262
BspFNI	CGCG	2 cut(s)	408, 462
BspLI	GGNNCC	4 cut(s)	6, 228, 492, 756
BspMI	ACCTGC	1 cut(s)	475
BspOI	GCTAGC	1 cut(s)	332
BspPI	GGATC	5 cut(s)	68, 485, 498, 590, 635
BssMI	GATC	6 cut(s)	60, 94, 142, 490, 595, 640
Bst4CI	ACNGT	2 cut(s)	67, 432
BstC8I	GCNNGC	2 cut(s)	330, 475
BstDEI	CTNAG	2 cut(s)	270, 333
BstENI	CCTNNNNNAGG	1 cut(s)	612
BstF5I	GGATG	5 cut(s)	253, 280, 361, 367, 475
BstFNI	CGCG	2 cut(s)	408, 462
BstHHI	GCGC	2 cut(s)	158, 464
BstKTI	GATC	6 cut(s)	63, 97, 145, 493, 598, 643
BstMAI	GTCTC	1 cut(s)	647
BstMBI	GATC	6 cut(s)	60, 94, 142, 490, 595, 640
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 470
BstSCI	CCNGG	1 cut(s)	151
BstUI	CGCG	2 cut(s)	408, 462
BstV1I	GCAGC	1 cut(s)	746
BstV2I	GAAGAC	1 cut(s)	296
BstX2I	RGATCY	2 cut(s)	490, 595
BstYI	RGATCY	2 cut(s)	490, 595
BsuRI	GGCC	2 cut(s)	366, 779
BtrI	CACGTC	1 cut(s)	302
BtsCI	GGATG	5 cut(s)	253, 280, 361, 367, 475
BveI	ACCTGC	1 cut(s)	475
Cac8I	GCNNGC	2 cut(s)	330, 475
CfoI	GCGC	2 cut(s)	158, 464
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	3 cut(s)	136, 412, 671
CviAII	CATG	1 cut(s)	236
CviJI	RGCY	8 cut(s)	5, 56, 280, 328, 332, 366, 755, 779
CviKI_1	RGCY	8 cut(s)	5, 56, 280, 328, 332, 366, 755, 779
CviQI	GTAC	3 cut(s)	136, 412, 671
DdeI	CTNAG	2 cut(s)	270, 333
DpnI	GATC	6 cut(s)	62, 96, 144, 492, 597, 642
DpnII	GATC	6 cut(s)	60, 94, 142, 490, 595, 640
EciI	GGCGGA	1 cut(s)	143
Eco57I	CTGAAG	2 cut(s)	630, 702
EcoNI	CCTNNNNNAGG	1 cut(s)	612
FaeI	CATG	1 cut(s)	239
FaiI	YATR	5 cut(s)	219, 237, 324, 393, 639
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 651, 683
FatI	CATG	1 cut(s)	235
FbaI	TGATCA	1 cut(s)	142
Fnu4HI	GCNGC	2 cut(s)	735, 738
FokI	GGATG	5 cut(s)	260, 287, 368, 374, 482
Fsp4HI	GCNGC	2 cut(s)	735, 738
FspBI	CTAG	2 cut(s)	329, 770
GlaI	GCGC	2 cut(s)	157, 463
GluI	GCNGC	2 cut(s)	735, 738
GsaI	CCCAGC	1 cut(s)	468
HaeIII	GGCC	2 cut(s)	366, 779
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	2 cut(s)	158, 464
Hin1II	CATG	1 cut(s)	239
Hin6I	GCGC	2 cut(s)	156, 462
HinP1I	GCGC	2 cut(s)	156, 462
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	4 cut(s)	17, 118, 576, 701
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	2 cut(s)	55, 86
Hpy188I	TCNGA	4 cut(s)	89, 106, 583, 682
Hpy188III	TCNNGA	5 cut(s)	291, 573, 593, 714, 786
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	605, 687
HpyCH4III	ACNGT	2 cut(s)	67, 432
HpyCH4IV	ACGT	1 cut(s)	301
HpyCH4V	TGCA	3 cut(s)	382, 484, 729
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 470
HpyF3I	CTNAG	2 cut(s)	270, 333
HpySE526I	ACGT	1 cut(s)	301
Hsp92II	CATG	1 cut(s)	239
HspAI	GCGC	2 cut(s)	156, 462
Ksp22I	TGATCA	1 cut(s)	142
Kzo9I	GATC	6 cut(s)	60, 94, 142, 490, 595, 640
LmnI	GCTCC	2 cut(s)	10, 760
LpnPI	CCDG	7 cut(s)	165, 338, 450, 470, 609, 621, 727
Lsp1109I	GCAGC	1 cut(s)	746
LweI	GCATC	4 cut(s)	346, 460, 471, 671
MaeI	CTAG	2 cut(s)	329, 770
MaeII	ACGT	1 cut(s)	301
MaeIII	GTNAC	1 cut(s)	772
MalI	GATC	6 cut(s)	62, 96, 144, 492, 597, 642
MboI	GATC	6 cut(s)	60, 94, 142, 490, 595, 640
MboII	GAAGA	5 cut(s)	47, 296, 695, 702, 774
MflI	RGATCY	2 cut(s)	490, 595
MluCI	AATT	4 cut(s)	242, 450, 498, 549
MlyI	GAGTC	2 cut(s)	127, 710
MmeI	TCCRAC	2 cut(s)	67, 84
MroXI	GAANNNNTTC	1 cut(s)	42
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	153
Mva1269I	GAATGC	1 cut(s)	322
MvnI	CGCG	2 cut(s)	408, 462
MwoI	GCNNNNNNNGC	2 cut(s)	164, 470
NciI	CCSGG	1 cut(s)	153
NdeII	GATC	6 cut(s)	60, 94, 142, 490, 595, 640
NheI	GCTAGC	1 cut(s)	328
NlaIII	CATG	1 cut(s)	239
NlaIV	GGNNCC	4 cut(s)	6, 228, 492, 756
NmuCI	GTSAC	1 cut(s)	772
PaqCI	CACCTGC	1 cut(s)	475
PctI	GAATGC	1 cut(s)	322
PdmI	GAANNNNTTC	1 cut(s)	42
PfeI	GAWTC	2 cut(s)	17, 576
PflMI	CCANNNNNTGG	1 cut(s)	720
PkrI	GCNGC	2 cut(s)	736, 739
PleI	GAGTC	2 cut(s)	126, 709
PpsI	GAGTC	2 cut(s)	126, 709
PspFI	CCCAGC	1 cut(s)	464
PspN4I	GGNNCC	4 cut(s)	6, 228, 492, 756
PsrI	GAACNNNNNNTAC	2 cut(s)	250, 282
PsuI	RGATCY	2 cut(s)	490, 595
RsaI	GTAC	3 cut(s)	137, 413, 672
RsaNI	GTAC	3 cut(s)	136, 412, 671
SatI	GCNGC	2 cut(s)	735, 738
Sau3AI	GATC	6 cut(s)	60, 94, 142, 490, 595, 640
SchI	GAGTC	2 cut(s)	127, 710
ScrFI	CCNGG	1 cut(s)	153
SetI	ASST	7 cut(s)	58, 282, 304, 330, 334, 489, 679
SfaNI	GCATC	4 cut(s)	346, 460, 471, 671
SmlI	CTYRAG	1 cut(s)	591
SmoI	CTYRAG	1 cut(s)	591
Sse9I	AATT	4 cut(s)	242, 450, 498, 549
SsiI	CCGC	3 cut(s)	128, 359, 737
SspMI	CTAG	2 cut(s)	329, 770
StyD4I	CCNGG	1 cut(s)	151
TaaI	ACNGT	2 cut(s)	67, 432
TaiI	ACGT	1 cut(s)	304
TasI	AATT	4 cut(s)	242, 450, 498, 549
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	740
TfiI	GAWTC	2 cut(s)	17, 576
TseFI	GTSAC	1 cut(s)	772
TseI	GCWGC	1 cut(s)	734
Tsp45I	GTSAC	1 cut(s)	772
TspDTI	ATGAA	2 cut(s)	48, 408
TspGWI	ACGGA	1 cut(s)	198
Van91I	CCANNNNNTGG	1 cut(s)	720
XagI	CCTNNNNNAGG	1 cut(s)	612
XmnI	GAANNNNTTC	1 cut(s)	42
XspI	CTAG	2 cut(s)	329, 770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.