Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006168.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

88180 .. 88671

Gene Structure 492 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006168.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 492 bp

atgaatgtcggtagctcaagttttcctacctctatcaacttagaggatgacggcactctcgcgagtgagtccccaagctcttcaaatgtgcatgcacgccccccaggtcaaaaagctcaaaaggctgctaagaaaaaatccaggcaagacgaaacaggtgaactcttattgcaaatgcaaaggattgcagaccaaggagagcgcgatctcgaatacaggctgcgactcagggaggagactaaattagctgagcagcacgcggatgatgctcgcacaatgaaagtggatccgtcaattttcacacccaaaaaaaggagttattgggagaggaagcaagcacagattattgagagggaggaacaaagctctagtgctagtgcatttcgtcaaccctcattttctccagaagaaaatacaccacatagtgaaaatgactctaacttggacctctacgtgccagttcaagagactcaatggatggggagaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

163

Amino Acids

18.55

Weight (kDa)

5.49

Isoelectric Point (pI)

63.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	62, 204, 260
AciI	CCGC	1 cut(s)	260
AclWI	GGATC	2 cut(s)	281, 294
AdeI	CACNNNGTG	1 cut(s)	425
AfiI	CCNNNNNNNGG	1 cut(s)	312
AgsI	TTSAA	2 cut(s)	84, 464
AjnI	CCWGG	2 cut(s)	103, 140
AluBI	AGCT	5 cut(s)	15, 78, 116, 248, 366
AluI	AGCT	5 cut(s)	15, 78, 116, 248, 366
Alw26I	GTCTC	2 cut(s)	230, 461
AlwI	GGATC	2 cut(s)	281, 294
ApeKI	GCWGC	3 cut(s)	125, 220, 253
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	1 cut(s)	445
AsuHPI	GGTGA	1 cut(s)	170
AvaII	GGWCC	1 cut(s)	445
BamHI	GGATCC	1 cut(s)	286
BbvI	GCAGC	3 cut(s)	112, 207, 265
BccI	CCATC	1 cut(s)	472
BceAI	ACGGC	1 cut(s)	67
BciT130I	CCWGG	2 cut(s)	105, 142
BcoDI	GTCTC	2 cut(s)	230, 461
BfaI	CTAG	2 cut(s)	369, 375
BisI	GCNGC	3 cut(s)	126, 221, 254
BlpI	GCTNAGC	1 cut(s)	249
BlsI	GCNGC	3 cut(s)	127, 222, 255
Bme1390I	CCNGG	2 cut(s)	105, 142
Bme18I	GGWCC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	445
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	2 cut(s)	105, 142
BmsI	GCATC	1 cut(s)	256
BpmI	CTGGAG	1 cut(s)	387
Bpu1102I	GCTNAGC	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	454
BsaJI	CCNNGG	2 cut(s)	103, 193
Bsc4I	CCNNNNNNNGG	1 cut(s)	312
Bse1I	ACTGG	1 cut(s)	458
BseBI	CCWGG	2 cut(s)	105, 142
BseDI	CCNNGG	2 cut(s)	103, 193
BseGI	GGATG	3 cut(s)	52, 268, 483
BseLI	CCNNNNNNNGG	1 cut(s)	312
BseMII	CTCAG	2 cut(s)	240, 241
BseNI	ACTGG	1 cut(s)	458
BseRI	GAGGAG	1 cut(s)	248
BseXI	GCAGC	3 cut(s)	112, 207, 265
Bsh1236I	CGCG	3 cut(s)	62, 204, 260
BslFI	GGGAC	1 cut(s)	55
BslI	CCNNNNNNNGG	1 cut(s)	312
BsmAI	GTCTC	2 cut(s)	230, 461
BsmFI	GGGAC	1 cut(s)	55
Bsp143I	GATC	2 cut(s)	205, 286
Bsp1720I	GCTNAGC	1 cut(s)	249
Bsp68I	TCGCGA	1 cut(s)	62
BspACI	CCGC	1 cut(s)	260
BspCNI	CTCAG	2 cut(s)	240, 241
BspFNI	CGCG	3 cut(s)	62, 204, 260
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	2 cut(s)	281, 294
BspQI	GCTCTTC	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	458
BssECI	CCNNGG	2 cut(s)	103, 193
BssMI	GATC	2 cut(s)	205, 286
BssT1I	CCWWGG	1 cut(s)	193
Bst2UI	CCWGG	2 cut(s)	105, 142
Bst6I	CTCTTC	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	454
BstC8I	GCNNGC	5 cut(s)	93, 97, 258, 271, 336
BstDEI	CTNAG	4 cut(s)	40, 129, 227, 249
BstF5I	GGATG	3 cut(s)	52, 268, 483
BstFNI	CGCG	3 cut(s)	62, 204, 260
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	2 cut(s)	208, 289
BstMAI	GTCTC	2 cut(s)	230, 461
BstMBI	GATC	2 cut(s)	205, 286
BstMWI	GCNNNNNNNGC	2 cut(s)	122, 266
BstNI	CCWGG	2 cut(s)	105, 142
BstNSI	RCATGY	1 cut(s)	95
BstSCI	CCNGG	2 cut(s)	103, 140
BstUI	CGCG	3 cut(s)	62, 204, 260
BstV1I	GCAGC	3 cut(s)	112, 207, 265
BstX2I	RGATCY	1 cut(s)	286
BstYI	RGATCY	1 cut(s)	286
BtsCI	GGATG	3 cut(s)	52, 268, 483
BtuMI	TCGCGA	1 cut(s)	62
Cac8I	GCNNGC	5 cut(s)	93, 97, 258, 271, 336
CfoI	GCGC	1 cut(s)	204
Cfr13I	GGNCC	1 cut(s)	445
CspCI	CAANNNNNGTGG	2 cut(s)	264, 299
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	7 cut(s)	15, 78, 116, 125, 220, 248, 366
CviKI_1	RGCY	7 cut(s)	15, 78, 116, 125, 220, 248, 366
DdeI	CTNAG	4 cut(s)	40, 129, 227, 249
DpnI	GATC	2 cut(s)	207, 288
DpnII	GATC	2 cut(s)	205, 286
DraIII	CACNNNGTG	1 cut(s)	425
Eam1104I	CTCTTC	1 cut(s)	85
EarI	CTCTTC	1 cut(s)	85
Eco130I	CCWWGG	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	445
EcoRII	CCWGG	2 cut(s)	103, 140
EcoT14I	CCWWGG	1 cut(s)	193
ErhI	CCWWGG	1 cut(s)	193
FaeI	CATG	1 cut(s)	95
FaiI	YATR	2 cut(s)	93, 423
FaqI	GGGAC	1 cut(s)	55
FatI	CATG	1 cut(s)	91
Fnu4HI	GCNGC	3 cut(s)	126, 221, 254
FokI	GGATG	2 cut(s)	59, 275
Fsp4HI	GCNGC	3 cut(s)	126, 221, 254
FspBI	CTAG	2 cut(s)	369, 375
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	3 cut(s)	126, 221, 254
GsuI	CTGGAG	1 cut(s)	387
HhaI	GCGC	1 cut(s)	204
Hin1II	CATG	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HincII	GTYRAC	1 cut(s)	389
HindII	GTYRAC	1 cut(s)	389
HinfI	GANTC	4 cut(s)	68, 225, 434, 469
HphI	GGTGA	1 cut(s)	170
Hpy166II	GTNNAC	2 cut(s)	161, 389
Hpy188III	TCNNGA	4 cut(s)	61, 209, 404, 464
Hpy8I	GTNNAC	2 cut(s)	161, 389
HpyCH4IV	ACGT	1 cut(s)	453
HpyCH4V	TGCA	6 cut(s)	91, 95, 172, 178, 188, 380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	122, 266
HpyF3I	CTNAG	4 cut(s)	40, 129, 227, 249
HpySE526I	ACGT	1 cut(s)	453
Hsp92II	CATG	1 cut(s)	95
HspAI	GCGC	1 cut(s)	202
Kzo9I	GATC	2 cut(s)	205, 286
LguI	GCTCTTC	1 cut(s)	85
LpnPI	CCDG	9 cut(s)	90, 117, 127, 141, 154, 202, 214, 417, 471
Lsp1109I	GCAGC	3 cut(s)	112, 207, 265
LweI	GCATC	1 cut(s)	256
MaeI	CTAG	2 cut(s)	369, 375
MaeII	ACGT	1 cut(s)	453
MalI	GATC	2 cut(s)	207, 288
MboI	GATC	2 cut(s)	205, 286
MboII	GAAGA	2 cut(s)	72, 419
MflI	RGATCY	1 cut(s)	286
MluCI	AATT	3 cut(s)	242, 294, 487
MlyI	GAGTC	4 cut(s)	77, 219, 428, 463
MnlI	CCTC	8 cut(s)	37, 40, 226, 321, 345, 349, 403, 458
MslI	CAYNNNNRTG	1 cut(s)	261
MspR9I	CCNGG	2 cut(s)	105, 142
MvaI	CCWGG	2 cut(s)	105, 142
MvnI	CGCG	3 cut(s)	62, 204, 260
MwoI	GCNNNNNNNGC	2 cut(s)	122, 266
NdeII	GATC	2 cut(s)	205, 286
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	288
NruI	TCGCGA	1 cut(s)	62
NspI	RCATGY	1 cut(s)	95
PaeI	GCATGC	1 cut(s)	95
PciSI	GCTCTTC	1 cut(s)	85
PkrI	GCNGC	3 cut(s)	127, 222, 255
PleI	GAGTC	4 cut(s)	76, 219, 428, 463
PpsI	GAGTC	4 cut(s)	76, 219, 428, 463
Ppu21I	YACGTR	1 cut(s)	454
Psp6I	CCWGG	2 cut(s)	103, 140
PspGI	CCWGG	2 cut(s)	103, 140
PspN4I	GGNNCC	1 cut(s)	288
PspPI	GGNCC	1 cut(s)	445
PsuI	RGATCY	1 cut(s)	286
RruI	TCGCGA	1 cut(s)	62
RseI	CAYNNNNRTG	1 cut(s)	261
SapI	GCTCTTC	1 cut(s)	85
SatI	GCNGC	3 cut(s)	126, 221, 254
Sau3AI	GATC	2 cut(s)	205, 286
Sau96I	GGNCC	1 cut(s)	445
SchI	GAGTC	4 cut(s)	77, 219, 428, 463
ScrFI	CCNGG	2 cut(s)	105, 142
SfaNI	GCATC	1 cut(s)	256
SinI	GGWCC	1 cut(s)	445
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	16
SmoI	CTYRAG	1 cut(s)	16
SphI	GCATGC	1 cut(s)	95
Sse9I	AATT	3 cut(s)	242, 294, 487
SsiI	CCGC	1 cut(s)	260
SspMI	CTAG	2 cut(s)	369, 375
StyD4I	CCNGG	2 cut(s)	103, 140
StyI	CCWWGG	1 cut(s)	193
TaiI	ACGT	1 cut(s)	456
TaqI	TCGA	1 cut(s)	210
TasI	AATT	3 cut(s)	242, 294, 487
TseI	GCWGC	3 cut(s)	125, 220, 253
TspDTI	ATGAA	2 cut(s)	17, 293
TspGWI	ACGGA	1 cut(s)	279
VpaK11BI	GGWCC	1 cut(s)	445
XceI	RCATGY	1 cut(s)	95
XspI	CTAG	2 cut(s)	369, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.