Rmu_sc0000288.1_g000031

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000288.1
Physical Location & Seq
Forward (+)
99804 .. 105317
5514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000288.1_g000031.1.cds

Sequence Viewer

Length: 828 bp
atgcaacgcgccagagggagaagacagaacccactcccgcatgacgacaaaataacggctcagcagtggctgacgcgcgagacacgcgctggagaagtagctgacacatggggcccagcagcgcagaacgggcaacaagctctccaacgattgggaggagggtgtgacggtcgttggaaaaagattagaccagcatgcgctcgatggcgtcaagctcttaacaaagcggcacttcttcgaggaagtggtgataatgccaccgacgaggtattacaagctaagtcaatctatcgtaccttagctaaaggagaggagtttgcgtttgagcattgttggccaatattaaaggatacaaaaaagtttagcaatccttcgggcatgaatgtcggtagctcaagttttcctacctctatcaacttagaggatgacgacactcccgcgagtgactcctcaagctcttcaaatgtgcatgcacgccccccaggtcaaaaagttcaaaaggctgctaagaaaaaatccaggcaagacgaaacaagtgaactcttattgcaaatgcaaaggattgcagaccaaggagagcgcgatctcgaatacaggctgcgactcagggaggagactaaattagctgagcagcacgcggatgatgctcgcacaatgaaagtggatccgtcaattttcacacccaaaaaaaggatcgaggcccaatccgaggccaccggaatcgcgccgtcgtcgacactcaaatcggtccggcatcaagcggctctcaatcttttgtcgtgcagtcgtcgaggcacaaatcagtccggcatcaaggctcaatcctga

Protein Analysis

275

Amino Acids

30.49

Weight (kDa)

9.72

Isoelectric Point (pI)

50.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 151
AccI GTMKAC 1 cut(s) 734
AccII CGCG 8 cut(s) 9, 76, 78, 87, 440, 582, 638, 725
AciI CCGC 5 cut(s) 38, 227, 438, 638, 761
AclWI GGATC 3 cut(s) 659, 672, 701
AcoI YGGCCR 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 208
AfaI GTAC 1 cut(s) 295
AfiI CCNNNNNNNGG 3 cut(s) 151, 690, 709
AgsI TTSAA 2 cut(s) 462, 497
AjnI CCWGG 2 cut(s) 481, 518
AluBI AGCT 8 cut(s) 101, 140, 215, 278, 302, 393, 456, 626
AluI AGCT 8 cut(s) 101, 140, 215, 278, 302, 393, 456, 626
Alw26I GTCTC 2 cut(s) 74, 608
AlwI GGATC 3 cut(s) 659, 672, 701
AlwNI CAGNNNCTG 1 cut(s) 70
AoxI GGCC 4 cut(s) 112, 335, 699, 711
ApaI GGGCCC 1 cut(s) 116
ApeKI GCWGC 4 cut(s) 119, 503, 598, 631
AspLEI GCGC 7 cut(s) 11, 78, 89, 124, 200, 582, 727
AspS9I GGNCC 4 cut(s) 112, 113, 700, 748
AsuHPI GGTGA 1 cut(s) 260
AvaII GGWCC 1 cut(s) 748
BaeGI GKGCMC 1 cut(s) 116
BalI TGGCCA 1 cut(s) 337
BamHI GGATCC 1 cut(s) 664
BanII GRGCYC 1 cut(s) 116
BbsI GAAGAC 1 cut(s) 28
BbvI GCAGC 4 cut(s) 131, 490, 585, 643
BccI CCATC 1 cut(s) 198
BceAI ACGGC 2 cut(s) 72, 712
BcgI CGANNNNNNTGC 2 cut(s) 367, 401
BciT130I CCWGG 2 cut(s) 483, 520
BciVI GTATCC 1 cut(s) 343
BcoDI GTCTC 2 cut(s) 74, 608
BfuI GTATCC 1 cut(s) 343
BisI GCNGC 6 cut(s) 120, 228, 504, 599, 632, 762
BlpI GCTNAGC 2 cut(s) 60, 627
BlsI GCNGC 6 cut(s) 121, 229, 505, 600, 633, 763
Bme1390I CCNGG 2 cut(s) 483, 520
Bme18I GGWCC 1 cut(s) 748
BmgT120I GGNCC 4 cut(s) 112, 113, 700, 748
BmiI GGNNCC 3 cut(s) 113, 114, 666
BmrFI CCNGG 2 cut(s) 483, 520
BmsI GCATC 3 cut(s) 634, 763, 819
BpiI GAAGAC 1 cut(s) 28
BpmI CTGGAG 1 cut(s) 111
Bpu10I CCTNAGC 1 cut(s) 298
Bpu1102I GCTNAGC 2 cut(s) 60, 627
BpuEI CTTGAG 2 cut(s) 379, 436
BsaHI GRCGYC 1 cut(s) 208
BsaJI CCNNGG 3 cut(s) 481, 571, 708
BsaWI WCCGGW 1 cut(s) 716
BsaXI ACNNNNNCTCC 4 cut(s) 126, 156, 305, 335
Bsc4I CCNNNNNNNGG 3 cut(s) 151, 690, 709
BseBI CCWGG 2 cut(s) 483, 520
BseDI CCNNGG 3 cut(s) 481, 571, 708
BseGI GGATG 2 cut(s) 430, 646
BseLI CCNNNNNNNGG 3 cut(s) 151, 690, 709
BseMII CTCAG 3 cut(s) 74, 618, 619
BseRI GAGGAG 4 cut(s) 171, 326, 439, 626
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 4 cut(s) 131, 490, 585, 643
BseYI CCCAGC 1 cut(s) 115
BsgI GTGCAG 1 cut(s) 802
Bsh1236I CGCG 8 cut(s) 9, 76, 78, 87, 440, 582, 638, 725
Bsh1285I CGRYCG 1 cut(s) 172
BshFI GGCC 4 cut(s) 114, 337, 701, 713
BsiEI CGRYCG 1 cut(s) 172
BsiSI CCGG 3 cut(s) 717, 751, 807
BslI CCNNNNNNNGG 3 cut(s) 151, 690, 709
BsmAI GTCTC 2 cut(s) 74, 608
BsnI GGCC 4 cut(s) 114, 337, 701, 713
Bsp120I GGGCCC 1 cut(s) 112
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 3 cut(s) 583, 664, 693
Bsp1720I GCTNAGC 2 cut(s) 60, 627
BspACI CCGC 5 cut(s) 38, 227, 438, 638, 761
BspANI GGCC 4 cut(s) 114, 337, 701, 713
BspCNI CTCAG 3 cut(s) 73, 618, 619
BspFNI CGCG 8 cut(s) 9, 76, 78, 87, 440, 582, 638, 725
BspLI GGNNCC 3 cut(s) 113, 114, 666
BspPI GGATC 3 cut(s) 659, 672, 701
BspQI GCTCTTC 1 cut(s) 463
BssECI CCNNGG 3 cut(s) 481, 571, 708
BssMI GATC 3 cut(s) 583, 664, 693
BssNI GRCGYC 1 cut(s) 208
BssT1I CCWWGG 1 cut(s) 571
Bst2UI CCWGG 2 cut(s) 483, 520
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 463
BstACI GRCGYC 1 cut(s) 208
BstC8I GCNNGC 5 cut(s) 196, 471, 475, 636, 649
BstDEI CTNAG 7 cut(s) 60, 279, 298, 418, 507, 605, 627
BstF5I GGATG 2 cut(s) 430, 646
BstFNI CGCG 8 cut(s) 9, 76, 78, 87, 440, 582, 638, 725
BstHHI GCGC 7 cut(s) 11, 78, 89, 124, 200, 582, 727
BstKTI GATC 3 cut(s) 586, 667, 696
BstMAI GTCTC 2 cut(s) 74, 608
BstMBI GATC 3 cut(s) 583, 664, 693
BstMCI CGRYCG 1 cut(s) 172
BstMWI GCNNNNNNNGC 4 cut(s) 84, 130, 334, 644
BstNI CCWGG 2 cut(s) 483, 520
BstNSI RCATGY 2 cut(s) 198, 473
BstSCI CCNGG 2 cut(s) 481, 518
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 8 cut(s) 9, 76, 78, 87, 440, 582, 638, 725
BstV1I GCAGC 4 cut(s) 131, 490, 585, 643
BstV2I GAAGAC 1 cut(s) 28
BstX2I RGATCY 1 cut(s) 664
BstYI RGATCY 1 cut(s) 664
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 4 cut(s) 114, 337, 701, 713
BtsCI GGATG 2 cut(s) 430, 646
BtsI GCAGTG 1 cut(s) 71
BtsIMutI CAGTG 1 cut(s) 71
Cac8I GCNNGC 5 cut(s) 196, 471, 475, 636, 649
CaiI CAGNNNCTG 1 cut(s) 70
CfoI GCGC 7 cut(s) 11, 78, 89, 124, 200, 582, 727
Cfr13I GGNCC 4 cut(s) 112, 113, 700, 748
CpoI CGGWCCG 1 cut(s) 748
CseI GACGC 2 cut(s) 82, 197
Csp6I GTAC 1 cut(s) 294
CspCI CAANNNNNGTGG 2 cut(s) 642, 677
CspI CGGWCCG 1 cut(s) 748
CviAII CATG 5 cut(s) 41, 108, 195, 379, 470
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 7 cut(s) 60, 279, 298, 418, 507, 605, 627
DpnI GATC 3 cut(s) 585, 666, 695
DpnII GATC 3 cut(s) 583, 664, 693
EaeI YGGCCR 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 463
EarI CTCTTC 1 cut(s) 463
Eco130I CCWWGG 1 cut(s) 571
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 748
EcoO109I RGGNCCY 1 cut(s) 112
EcoRII CCWGG 2 cut(s) 481, 518
EcoT14I CCWWGG 1 cut(s) 571
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 571
FaeI CATG 5 cut(s) 44, 111, 198, 382, 473
FaiI YATR 5 cut(s) 42, 109, 196, 380, 471
FalI AAGNNNNNCTT 2 cut(s) 216, 248
FatI CATG 5 cut(s) 40, 107, 194, 378, 469
FauI CCCGC 2 cut(s) 45, 445
FblI GTMKAC 1 cut(s) 734
Fnu4HI GCNGC 6 cut(s) 120, 228, 504, 599, 632, 762
FokI GGATG 2 cut(s) 437, 653
FriOI GRGCYC 1 cut(s) 116
Fsp4HI GCNGC 6 cut(s) 120, 228, 504, 599, 632, 762
GlaI GCGC 7 cut(s) 10, 77, 88, 123, 199, 581, 726
GluI GCNGC 6 cut(s) 120, 228, 504, 599, 632, 762
GsaI CCCAGC 1 cut(s) 119
GsuI CTGGAG 1 cut(s) 111
HaeIII GGCC 4 cut(s) 114, 337, 701, 713
HapII CCGG 3 cut(s) 717, 751, 807
HgaI GACGC 2 cut(s) 82, 197
HhaI GCGC 7 cut(s) 11, 78, 89, 124, 200, 582, 727
Hin1I GRCGYC 1 cut(s) 208
Hin1II CATG 5 cut(s) 44, 111, 198, 382, 473
Hin6I GCGC 7 cut(s) 9, 76, 87, 122, 198, 580, 725
HinP1I GCGC 7 cut(s) 9, 76, 87, 122, 198, 580, 725
HincII GTYRAC 1 cut(s) 735
HindII GTYRAC 1 cut(s) 735
HinfI GANTC 3 cut(s) 446, 603, 720
HpaII CCGG 3 cut(s) 717, 751, 807
HphI GGTGA 1 cut(s) 260
Hpy166II GTNNAC 2 cut(s) 539, 735
Hpy188I TCNGA 1 cut(s) 709
Hpy188III TCNNGA 2 cut(s) 587, 825
Hpy8I GTNNAC 2 cut(s) 539, 735
Hpy99I CGWCG 4 cut(s) 266, 733, 736, 792
HpyAV CCTTC 1 cut(s) 381
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 7 cut(s) 4, 469, 473, 550, 556, 566, 783
HpyF10VI GCNNNNNNNGC 4 cut(s) 84, 130, 334, 644
HpyF3I CTNAG 7 cut(s) 60, 279, 298, 418, 507, 605, 627
Hsp92I GRCGYC 1 cut(s) 208
Hsp92II CATG 5 cut(s) 44, 111, 198, 382, 473
HspAI GCGC 7 cut(s) 9, 76, 87, 122, 198, 580, 725
Kzo9I GATC 3 cut(s) 583, 664, 693
LguI GCTCTTC 1 cut(s) 463
Lsp1109I GCAGC 4 cut(s) 131, 490, 585, 643
LweI GCATC 3 cut(s) 634, 763, 819
MaeIII GTNAC 2 cut(s) 164, 443
MalI GATC 3 cut(s) 585, 666, 695
MboI GATC 3 cut(s) 583, 664, 693
MboII GAAGA 3 cut(s) 33, 227, 450
MflI RGATCY 1 cut(s) 664
MhlI GDGCHC 1 cut(s) 116
MlsI TGGCCA 1 cut(s) 337
MluCI AATT 2 cut(s) 620, 672
MluNI TGGCCA 1 cut(s) 337
MlyI GAGTC 2 cut(s) 440, 597
MmeI TCCRAC 2 cut(s) 155, 169
Mox20I TGGCCA 1 cut(s) 337
MscI TGGCCA 1 cut(s) 337
MseI TTAA 2 cut(s) 219, 344
MslI CAYNNNNRTG 1 cut(s) 639
Msp20I TGGCCA 1 cut(s) 337
MspI CCGG 3 cut(s) 717, 751, 807
MspR9I CCNGG 2 cut(s) 483, 520
MvaI CCWGG 2 cut(s) 483, 520
MvnI CGCG 8 cut(s) 9, 76, 78, 87, 440, 582, 638, 725
MwoI GCNNNNNNNGC 4 cut(s) 84, 130, 334, 644
NdeII GATC 3 cut(s) 583, 664, 693
NlaIII CATG 5 cut(s) 44, 111, 198, 382, 473
NlaIV GGNNCC 3 cut(s) 113, 114, 666
NmuCI GTSAC 2 cut(s) 164, 443
NspI RCATGY 2 cut(s) 198, 473
PaeI GCATGC 2 cut(s) 198, 473
PciSI GCTCTTC 1 cut(s) 463
PfeI GAWTC 1 cut(s) 720
PflMI CCANNNNNTGG 1 cut(s) 151
PkrI GCNGC 6 cut(s) 121, 229, 505, 600, 633, 763
PleI GAGTC 2 cut(s) 440, 597
PpsI GAGTC 2 cut(s) 440, 597
Psp6I CCWGG 2 cut(s) 481, 518
PspFI CCCAGC 1 cut(s) 115
PspGI CCWGG 2 cut(s) 481, 518
PspN4I GGNNCC 3 cut(s) 113, 114, 666
PspOMI GGGCCC 1 cut(s) 112
PspPI GGNCC 4 cut(s) 112, 113, 700, 748
PstNI CAGNNNCTG 1 cut(s) 70
PsuI RGATCY 1 cut(s) 664
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
RseI CAYNNNNRTG 1 cut(s) 639
Rsr2I CGGWCCG 1 cut(s) 748
RsrII CGGWCCG 1 cut(s) 748
SalI GTCGAC 1 cut(s) 733
SapI GCTCTTC 1 cut(s) 463
SaqAI TTAA 2 cut(s) 219, 344
SatI GCNGC 6 cut(s) 120, 228, 504, 599, 632, 762
Sau3AI GATC 3 cut(s) 583, 664, 693
Sau96I GGNCC 4 cut(s) 112, 113, 700, 748
SchI GAGTC 2 cut(s) 440, 597
ScrFI CCNGG 2 cut(s) 483, 520
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 3 cut(s) 634, 763, 819
SinI GGWCC 1 cut(s) 748
SmiMI CAYNNNNRTG 1 cut(s) 639
SmlI CTYRAG 2 cut(s) 394, 451
SmoI CTYRAG 2 cut(s) 394, 451
SphI GCATGC 2 cut(s) 198, 473
Sse9I AATT 2 cut(s) 620, 672
SsiI CCGC 5 cut(s) 38, 227, 438, 638, 761
SspI AATATT 1 cut(s) 342
StyD4I CCNGG 2 cut(s) 481, 518
StyI CCWWGG 1 cut(s) 571
TaaI ACNGT 1 cut(s) 170
TaqI TCGA 6 cut(s) 202, 238, 588, 696, 734, 790
TaqII GACCGA 1 cut(s) 736
TasI AATT 2 cut(s) 620, 672
TauI GCSGC 2 cut(s) 230, 764
TfiI GAWTC 1 cut(s) 720
Tru1I TTAA 2 cut(s) 219, 344
Tru9I TTAA 2 cut(s) 219, 344
TscAI CASTG 1 cut(s) 71
TseFI GTSAC 2 cut(s) 164, 443
TseI GCWGC 4 cut(s) 119, 503, 598, 631
Tsp45I GTSAC 2 cut(s) 164, 443
TspDTI ATGAA 2 cut(s) 395, 671
TspGWI ACGGA 1 cut(s) 657
TspRI CASTG 1 cut(s) 71
Van91I CCANNNNNTGG 1 cut(s) 151
VpaK11BI GGWCC 1 cut(s) 748
XceI RCATGY 2 cut(s) 198, 473
XmiI GTMKAC 1 cut(s) 734
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.