RLG00000003630

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000386
Physical Location & Seq
Reverse (-)
50958958 .. 50960660
1703 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003630

Sequence Viewer

Length: 399 bp
ATGAGACCCTTGAGATTGTCGATTTCGGAGCAGAGCTCGAGCTACAGGGCCAGGTTGCCTGAAACCCGATCCCGAGGAGATGAAGATGGCAATGACGACAGCGACTTTGGTCCAGTGCTTGAGAAGCCAATCACGCTTCCATATTCCCGCAGGAGGAGCGGCAGCAAAGGAGGAGTTGCTGGGATTGGGCTTGAGGGGAGAGGGAGAAGACAGAACCCACTAGCGGATGACGACAAAATAACAGCTCCGCAGTGGCTGAAGCGCGAGACACGCGCTGGAGTTGCAGCCGACACATGGGGCCCAGCAGCGCAGAACGGGCGGATATCTTCCAACGATAAGAAATCTAACGGCCCAGATTCAACTTCATTAATTCTATTTAAAATGAAAGGCCCAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.37

Weight (kDa)

9.81

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 159
AccII CGCG 2 cut(s) 264, 273
AciI CCGC 5 cut(s) 148, 159, 224, 248, 319
AclWI GGATC 1 cut(s) 63
AcuI CTGAAG 1 cut(s) 278
AfiI CCNNNNNNNGG 3 cut(s) 153, 223, 294
AgsI TTSAA 1 cut(s) 360
AjnI CCWGG 1 cut(s) 50
AluBI AGCT 3 cut(s) 36, 42, 245
AluI AGCT 3 cut(s) 36, 42, 245
Alw21I GWGCWC 1 cut(s) 38
Alw26I GTCTC 1 cut(s) 260
AlwI GGATC 1 cut(s) 63
AlwNI CAGNNNCTG 1 cut(s) 256
Ama87I CYCGRG 2 cut(s) 37, 72
AoxI GGCC 4 cut(s) 48, 298, 349, 388
ApaI GGGCCC 1 cut(s) 302
ApeKI GCWGC 3 cut(s) 162, 284, 305
ArsI GACNNNNNNTTYG 2 cut(s) 89, 121
AseI ATTAAT 1 cut(s) 368
AspLEI GCGC 3 cut(s) 264, 275, 310
AspS9I GGNCC 6 cut(s) 48, 110, 298, 299, 350, 389
AvaI CYCGRG 2 cut(s) 37, 72
AvaII GGWCC 1 cut(s) 110
BaeGI GKGCMC 1 cut(s) 302
BanII GRGCYC 2 cut(s) 38, 302
BbsI GAAGAC 1 cut(s) 214
Bbv12I GWGCWC 1 cut(s) 38
BbvI GCAGC 3 cut(s) 174, 296, 317
BccI CCATC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 364
BciT130I CCWGG 1 cut(s) 52
BcoDI GTCTC 1 cut(s) 260
BfaI CTAG 1 cut(s) 221
BfmI CTRYAG 1 cut(s) 43
BisI GCNGC 4 cut(s) 160, 163, 285, 306
BlsI GCNGC 4 cut(s) 161, 164, 286, 307
Bme1390I CCNGG 1 cut(s) 52
Bme18I GGWCC 1 cut(s) 110
BmeT110I CYCGRG 2 cut(s) 37, 72
BmgT120I GGNCC 6 cut(s) 48, 110, 298, 299, 350, 389
BmiI GGNNCC 2 cut(s) 299, 300
BmrFI CCNGG 1 cut(s) 52
BoxI GACNNNNGTC 1 cut(s) 108
BpiI GAAGAC 1 cut(s) 214
BplI GAGNNNNNCTC 2 cut(s) 20, 52
BpmI CTGGAG 1 cut(s) 297
BpuEI CTTGAG 3 cut(s) 31, 140, 212
BsaJI CCNNGG 1 cut(s) 73
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 223, 294
Bse1I ACTGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 97
BseBI CCWGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 1 cut(s) 232
BseLI CCNNNNNNNGG 3 cut(s) 153, 223, 294
BseMI GCAATG 1 cut(s) 97
BseNI ACTGG 1 cut(s) 113
BseRI GAGGAG 3 cut(s) 90, 169, 186
BseSI GKGCMC 1 cut(s) 302
BseXI GCAGC 3 cut(s) 174, 296, 317
BseYI CCCAGC 2 cut(s) 179, 301
Bsh1236I CGCG 2 cut(s) 264, 273
BshFI GGCC 4 cut(s) 50, 300, 351, 390
BsiHKAI GWGCWC 1 cut(s) 38
BsiHKCI CYCGRG 2 cut(s) 37, 72
BslI CCNNNNNNNGG 3 cut(s) 153, 223, 294
BsmAI GTCTC 1 cut(s) 260
BsnI GGCC 4 cut(s) 50, 300, 351, 390
BsoBI CYCGRG 2 cut(s) 37, 72
Bsp120I GGGCCC 1 cut(s) 298
Bsp1286I GDGCHC 2 cut(s) 38, 302
Bsp143I GATC 1 cut(s) 68
BspACI CCGC 5 cut(s) 148, 159, 224, 248, 319
BspANI GGCC 4 cut(s) 50, 300, 351, 390
BspFNI CGCG 2 cut(s) 264, 273
BspLI GGNNCC 2 cut(s) 299, 300
BspPI GGATC 1 cut(s) 63
BsrBI CCGCTC 1 cut(s) 159
BsrDI GCAATG 1 cut(s) 97
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 68
Bst2UI CCWGG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 232
BstFNI CGCG 2 cut(s) 264, 273
BstHHI GCGC 3 cut(s) 264, 275, 310
BstKTI GATC 1 cut(s) 71
BstMAI GTCTC 1 cut(s) 260
BstMBI GATC 1 cut(s) 68
BstMWI GCNNNNNNNGC 6 cut(s) 124, 133, 156, 270, 281, 316
BstNI CCWGG 1 cut(s) 52
BstPAI GACNNNNGTC 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 50
BstSFI CTRYAG 1 cut(s) 43
BstSLI GKGCMC 1 cut(s) 302
BstUI CGCG 2 cut(s) 264, 273
BstV1I GCAGC 3 cut(s) 174, 296, 317
BstV2I GAAGAC 1 cut(s) 214
BsuRI GGCC 4 cut(s) 50, 300, 351, 390
BtsCI GGATG 1 cut(s) 232
BtsI GCAGTG 1 cut(s) 257
BtsIMutI CAGTG 2 cut(s) 120, 257
CaiI CAGNNNCTG 1 cut(s) 256
CfoI GCGC 3 cut(s) 264, 275, 310
Cfr13I GGNCC 6 cut(s) 48, 110, 298, 299, 350, 389
CviAII CATG 1 cut(s) 294
DpnI GATC 1 cut(s) 70
DpnII GATC 1 cut(s) 68
DraI TTTAAA 1 cut(s) 379
EciI GGCGGA 1 cut(s) 334
Ecl136II GAGCTC 1 cut(s) 36
Eco24I GRGCYC 2 cut(s) 38, 302
Eco32I GATATC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 110
Eco53kI GAGCTC 1 cut(s) 36
Eco57I CTGAAG 1 cut(s) 278
Eco88I CYCGRG 2 cut(s) 37, 72
EcoICRI GAGCTC 1 cut(s) 36
EcoO109I RGGNCCY 1 cut(s) 298
EcoRII CCWGG 1 cut(s) 50
EcoRV GATATC 1 cut(s) 324
EcoT38I GRGCYC 2 cut(s) 38, 302
FaeI CATG 1 cut(s) 297
FaiI YATR 2 cut(s) 142, 295
FatI CATG 1 cut(s) 293
FauI CCCGC 1 cut(s) 155
Fnu4HI GCNGC 4 cut(s) 160, 163, 285, 306
FokI GGATG 1 cut(s) 239
FriOI GRGCYC 2 cut(s) 38, 302
Fsp4HI GCNGC 4 cut(s) 160, 163, 285, 306
FspBI CTAG 1 cut(s) 221
GlaI GCGC 3 cut(s) 263, 274, 309
GluI GCNGC 4 cut(s) 160, 163, 285, 306
GsaI CCCAGC 2 cut(s) 183, 305
GsuI CTGGAG 1 cut(s) 297
HaeIII GGCC 4 cut(s) 50, 300, 351, 390
HhaI GCGC 3 cut(s) 264, 275, 310
Hin1II CATG 1 cut(s) 297
Hin6I GCGC 3 cut(s) 262, 273, 308
HinP1I GCGC 3 cut(s) 262, 273, 308
HinfI GANTC 1 cut(s) 356
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 72
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 6 cut(s) 124, 133, 156, 270, 281, 316
Hsp92II CATG 1 cut(s) 297
HspAI GCGC 3 cut(s) 262, 273, 308
Kzo9I GATC 1 cut(s) 68
LmnI GCTCC 3 cut(s) 28, 156, 250
Lsp1109I GCAGC 3 cut(s) 174, 296, 317
MaeI CTAG 1 cut(s) 221
MalI GATC 1 cut(s) 70
MbiI CCGCTC 1 cut(s) 159
MboI GATC 1 cut(s) 68
MboII GAAGA 3 cut(s) 95, 219, 318
MhlI GDGCHC 2 cut(s) 38, 302
MluCI AATT 1 cut(s) 369
MmeI TCCRAC 1 cut(s) 354
MnlI CCTC 5 cut(s) 68, 147, 164, 187, 194
MseI TTAA 3 cut(s) 368, 378, 397
MspR9I CCNGG 1 cut(s) 52
MvaI CCWGG 1 cut(s) 52
MvnI CGCG 2 cut(s) 264, 273
MwoI GCNNNNNNNGC 6 cut(s) 124, 133, 156, 270, 281, 316
NdeII GATC 1 cut(s) 68
NlaIII CATG 1 cut(s) 297
NlaIV GGNNCC 2 cut(s) 299, 300
PaeR7I CTCGAG 1 cut(s) 37
PfeI GAWTC 1 cut(s) 356
PkrI GCNGC 4 cut(s) 161, 164, 286, 307
PshAI GACNNNNGTC 1 cut(s) 108
PshBI ATTAAT 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 38
Psp6I CCWGG 1 cut(s) 50
PspFI CCCAGC 2 cut(s) 179, 301
PspGI CCWGG 1 cut(s) 50
PspN4I GGNNCC 2 cut(s) 299, 300
PspOMI GGGCCC 1 cut(s) 298
PspPI GGNCC 6 cut(s) 48, 110, 298, 299, 350, 389
PspXI VCTCGAGB 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 256
SacI GAGCTC 1 cut(s) 38
SaqAI TTAA 3 cut(s) 368, 378, 397
SatI GCNGC 4 cut(s) 160, 163, 285, 306
Sau3AI GATC 1 cut(s) 68
Sau96I GGNCC 6 cut(s) 48, 110, 298, 299, 350, 389
ScrFI CCNGG 1 cut(s) 52
SduI GDGCHC 2 cut(s) 38, 302
SetI ASST 4 cut(s) 38, 44, 56, 247
SfcI CTRYAG 1 cut(s) 43
Sfr274I CTCGAG 1 cut(s) 37
SinI GGWCC 1 cut(s) 110
SlaI CTCGAG 1 cut(s) 37
SmlI CTYRAG 4 cut(s) 10, 37, 119, 191
SmoI CTYRAG 4 cut(s) 10, 37, 119, 191
Sse9I AATT 1 cut(s) 369
SsiI CCGC 5 cut(s) 148, 159, 224, 248, 319
SspMI CTAG 1 cut(s) 221
SstI GAGCTC 1 cut(s) 38
StyD4I CCNGG 1 cut(s) 50
TaqI TCGA 2 cut(s) 20, 38
TasI AATT 1 cut(s) 369
TauI GCSGC 1 cut(s) 162
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 3 cut(s) 368, 378, 397
Tru9I TTAA 3 cut(s) 368, 378, 397
TscAI CASTG 2 cut(s) 120, 257
TseI GCWGC 3 cut(s) 162, 284, 305
TspDTI ATGAA 3 cut(s) 96, 354, 398
TspRI CASTG 2 cut(s) 120, 257
VpaK11BI GGWCC 1 cut(s) 110
VspI ATTAAT 1 cut(s) 368
XhoI CTCGAG 1 cut(s) 37
XspI CTAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.