Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00620

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

1718 .. 2729

Gene Structure 1012 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G013760.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGACTCCAAGAGGGGATTCATGGAAACACAATGAAGAAGTTATTCTTTGCCGAGCTTGGATCACCGTTGGGGGTAATGGTGCTGTCAGAAAAGATCAAACGTCGGAGTTATTATGGAGTCGTGTTTCGGAGGAGTACAATGCTCACAAACCGGTAGGTTGCATGGAGAGAACAACTTCTAGTTGCCAAGCTCGCTGGAAGAAAATAAGTCTGGCATGTATGAAGTGGCGCCATGCTCTTAACAAGGTCGAACATTTTCAACGAAGAAGCGGCGAAAATATGGAGGACGAGCTCATGAATGTCAAATCAACGTACTACGACACAAATGGTTGTGATTTTTTGTTTGAGCATTGTTGGAGAGAGTTGAAAAATACGGAAAAGTTTGGGAAAATTCCATCAATGGAAAACACCCCCTTTAGTGTTCCTAATCATGTTGACTTGGATGACGATCGAACACCCAATACTGATGATGAGCCGACTCCATCAAGGAAGGCACGTCCTCAAGGACAGAAAGCTCAGAAGCTAGCTAAGAAAAAAGGTAATAAGCAGGATGCGGATGGCCTACGAGTTCAAATGAAGAAATATTATGAACAAACAGAGCGCGAGTACCAACAAAGGCAAAGACAGTTTGAGGAAGGCCAACTAATTGAGCAACGCGCTGAGGATGCTCGCACGATGCAGGTGGATCCATCAATTTTCACCCCAAGAAAGAGGAGTTATTGGGAGAGGAAGCAACAACAAATAATTGATAAGGAGGCAGAAACTTCAAGCATCCCGGAACAATCTCAAGATCCTACACCCTCTGGAGGAGACAACACAGGCTTGGCCACTTATGATTCACTTCAAGAGACATCTTGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

287

Amino Acids

33.49

Weight (kDa)

6.63

Isoelectric Point (pI)

53.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	113 - 248	2.3e-11	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	670
Acc36I	ACCTGC	1 cut(s)	670
AccB1I	GGYRCC	1 cut(s)	228
AccII	CGCG	2 cut(s)	603, 657
AciI	CCGC	2 cut(s)	270, 554
AclWI	GGATC	4 cut(s)	68, 680, 693, 785
AcoI	YGGCCR	1 cut(s)	825
AcsI	RAATTY	1 cut(s)	390
AcyI	GRCGYC	1 cut(s)	229
AfaI	GTAC	3 cut(s)	137, 314, 608
AfiI	CCNNNNNNNGG	1 cut(s)	806
AgeI	ACCGGT	1 cut(s)	151
AgsI	TTSAA	5 cut(s)	260, 367, 572, 768, 845
AjiI	CACGTC	1 cut(s)	497
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AluBI	AGCT	6 cut(s)	56, 191, 292, 515, 523, 527
AluI	AGCT	6 cut(s)	56, 191, 292, 515, 523, 527
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	2 cut(s)	804, 842
AlwI	GGATC	4 cut(s)	68, 680, 693, 785
AoxI	GGCC	3 cut(s)	559, 637, 825
ApoI	RAATTY	1 cut(s)	390
AsiGI	ACCGGT	1 cut(s)	151
Asp700I	GAANNNNTTC	3 cut(s)	42, 175, 255
AspLEI	GCGC	3 cut(s)	231, 603, 659
AsuC2I	CCSGG	1 cut(s)	776
AsuHPI	GGTGA	2 cut(s)	55, 691
AsuNHI	GCTAGC	1 cut(s)	523
BalI	TGGCCA	1 cut(s)	827
BamHI	GGATCC	1 cut(s)	685
BanI	GGYRCC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	294
BbvCI	CCTCAGC	1 cut(s)	660
BccI	CCATC	4 cut(s)	403, 490, 551, 697
BcnI	CCSGG	1 cut(s)	776
BcoDI	GTCTC	2 cut(s)	804, 842
BfaI	CTAG	2 cut(s)	180, 524
BfoI	RGCGCY	1 cut(s)	232
BfuAI	ACCTGC	1 cut(s)	670
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	776
BmgBI	CACGTC	1 cut(s)	497
BmiI	GGNNCC	2 cut(s)	230, 687
BmrFI	CCNGG	1 cut(s)	776
BmsI	GCATC	4 cut(s)	541, 655, 666, 780
BmtI	GCTAGC	1 cut(s)	527
BpmI	CTGGAG	1 cut(s)	825
Bpu10I	CCTNAGC	1 cut(s)	660
BpuEI	CTTGAG	2 cut(s)	486, 771
BpuMI	CCSGG	1 cut(s)	776
BsaBI	GATNNNNATC	1 cut(s)	447
BsaHI	GRCGYC	1 cut(s)	229
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	806
Bse118I	RCCGGY	1 cut(s)	151
Bse8I	GATNNNNATC	1 cut(s)	447
BseGI	GGATG	6 cut(s)	448, 556, 562, 670, 771, 864
BseJI	GATNNNNATC	1 cut(s)	447
BseLI	CCNNNNNNNGG	1 cut(s)	806
BseMII	CTCAG	2 cut(s)	530, 651
BseRI	GAGGAG	3 cut(s)	146, 727, 822
Bsh1236I	CGCG	2 cut(s)	603, 657
Bsh1285I	CGRYCG	1 cut(s)	451
BshFI	GGCC	3 cut(s)	561, 639, 827
BshNI	GGYRCC	1 cut(s)	228
BshTI	ACCGGT	1 cut(s)	151
BsiEI	CGRYCG	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	2 cut(s)	152, 776
BslI	CCNNNNNNNGG	1 cut(s)	806
BsmAI	GTCTC	2 cut(s)	804, 842
BsnI	GGCC	3 cut(s)	561, 639, 827
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	5 cut(s)	60, 94, 448, 685, 790
BspACI	CCGC	2 cut(s)	270, 554
BspANI	GGCC	3 cut(s)	561, 639, 827
BspCNI	CTCAG	2 cut(s)	529, 652
BspFNI	CGCG	2 cut(s)	603, 657
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	230, 687
BspMI	ACCTGC	1 cut(s)	670
BspOI	GCTAGC	1 cut(s)	527
BspPI	GGATC	4 cut(s)	68, 680, 693, 785
BspT107I	GGYRCC	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	151
BssMI	GATC	5 cut(s)	60, 94, 448, 685, 790
BssNI	GRCGYC	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	67, 627
BstACI	GRCGYC	1 cut(s)	229
BstC8I	GCNNGC	3 cut(s)	193, 525, 670
BstDEI	CTNAG	3 cut(s)	516, 528, 660
BstF5I	GGATG	6 cut(s)	448, 556, 562, 670, 771, 864
BstFNI	CGCG	2 cut(s)	603, 657
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	3 cut(s)	231, 603, 659
BstKTI	GATC	5 cut(s)	63, 97, 451, 688, 793
BstMAI	GTCTC	2 cut(s)	804, 842
BstMBI	GATC	5 cut(s)	60, 94, 448, 685, 790
BstMCI	CGRYCG	1 cut(s)	451
BstMWI	GCNNNNNNNGC	2 cut(s)	192, 665
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	774
BstUI	CGCG	2 cut(s)	603, 657
BstX2I	RGATCY	2 cut(s)	685, 790
BstYI	RGATCY	2 cut(s)	685, 790
BsuRI	GGCC	3 cut(s)	561, 639, 827
BtrI	CACGTC	1 cut(s)	497
BtsCI	GGATG	6 cut(s)	448, 556, 562, 670, 771, 864
BveI	ACCTGC	1 cut(s)	670
Cac8I	GCNNGC	3 cut(s)	193, 525, 670
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	3 cut(s)	231, 603, 659
Cfr10I	RCCGGY	1 cut(s)	151
Csp6I	GTAC	3 cut(s)	136, 313, 607
CspAI	ACCGGT	1 cut(s)	151
CviAII	CATG	6 cut(s)	21, 163, 216, 233, 295, 431
CviQI	GTAC	3 cut(s)	136, 313, 607
DdeI	CTNAG	3 cut(s)	516, 528, 660
DinI	GGCGCC	1 cut(s)	230
DpnI	GATC	5 cut(s)	62, 96, 450, 687, 792
DpnII	GATC	5 cut(s)	60, 94, 448, 685, 790
EaeI	YGGCCR	1 cut(s)	825
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	294
EgeI	GGCGCC	1 cut(s)	230
EheI	GGCGCC	1 cut(s)	230
FaeI	CATG	6 cut(s)	24, 166, 219, 236, 298, 434
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FatI	CATG	6 cut(s)	20, 162, 215, 232, 294, 430
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	5 cut(s)	455, 563, 569, 677, 758
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	2 cut(s)	180, 524
GlaI	GCGC	3 cut(s)	230, 602, 658
GluI	GCNGC	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	825
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	3 cut(s)	561, 639, 827
HapII	CCGG	2 cut(s)	152, 776
HhaI	GCGC	3 cut(s)	231, 603, 659
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	6 cut(s)	24, 166, 219, 236, 298, 434
Hin6I	GCGC	3 cut(s)	229, 601, 657
HinP1I	GCGC	3 cut(s)	229, 601, 657
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HinfI	GANTC	5 cut(s)	4, 17, 118, 478, 836
HpaII	CCGG	2 cut(s)	152, 776
HphI	GGTGA	2 cut(s)	55, 691
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	4 cut(s)	89, 106, 130, 519
Hpy188III	TCNNGA	4 cut(s)	295, 788, 804, 845
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	1 cut(s)	106
HpyAV	CCTTC	2 cut(s)	484, 629
HpyCH4III	ACNGT	2 cut(s)	67, 627
HpyCH4IV	ACGT	3 cut(s)	101, 311, 496
HpyCH4V	TGCA	2 cut(s)	162, 679
HpyF10VI	GCNNNNNNNGC	2 cut(s)	192, 665
HpyF3I	CTNAG	3 cut(s)	516, 528, 660
HpySE526I	ACGT	3 cut(s)	101, 311, 496
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	6 cut(s)	24, 166, 219, 236, 298, 434
HspAI	GCGC	3 cut(s)	229, 601, 657
KasI	GGCGCC	1 cut(s)	228
Kzo9I	GATC	5 cut(s)	60, 94, 448, 685, 790
LpnPI	CCDG	8 cut(s)	165, 181, 197, 533, 665, 789, 789, 804
LweI	GCATC	4 cut(s)	541, 655, 666, 780
MaeI	CTAG	2 cut(s)	180, 524
MaeII	ACGT	3 cut(s)	101, 311, 496
MalI	GATC	5 cut(s)	62, 96, 450, 687, 792
MboI	GATC	5 cut(s)	60, 94, 448, 685, 790
MboII	GAAGA	4 cut(s)	47, 211, 276, 589
MflI	RGATCY	2 cut(s)	685, 790
MhlI	GDGCHC	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	827
MluCI	AATT	4 cut(s)	390, 645, 693, 744
MluNI	TGGCCA	1 cut(s)	827
Mly113I	GGCGCC	1 cut(s)	229
MlyI	GAGTC	2 cut(s)	127, 472
MmeI	TCCRAC	2 cut(s)	84, 335
Mox20I	TGGCCA	1 cut(s)	827
MroXI	GAANNNNTTC	3 cut(s)	42, 175, 255
MscI	TGGCCA	1 cut(s)	827
MseI	TTAA	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	827
MspI	CCGG	2 cut(s)	152, 776
MspR9I	CCNGG	1 cut(s)	776
MvnI	CGCG	2 cut(s)	603, 657
MwoI	GCNNNNNNNGC	2 cut(s)	192, 665
NarI	GGCGCC	1 cut(s)	229
NciI	CCSGG	1 cut(s)	776
NdeII	GATC	5 cut(s)	60, 94, 448, 685, 790
NheI	GCTAGC	1 cut(s)	523
NlaIII	CATG	6 cut(s)	24, 166, 219, 236, 298, 434
NlaIV	GGNNCC	2 cut(s)	230, 687
NmeAIII	GCCGAG	1 cut(s)	77
NspI	RCATGY	1 cut(s)	219
PagI	TCATGA	1 cut(s)	294
PaqCI	CACCTGC	1 cut(s)	670
PdmI	GAANNNNTTC	3 cut(s)	42, 175, 255
PfeI	GAWTC	2 cut(s)	17, 836
PfoI	TCCNGGA	1 cut(s)	774
PinAI	ACCGGT	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	272
Ple19I	CGATCG	1 cut(s)	451
PleI	GAGTC	2 cut(s)	126, 472
PluTI	GGCGCC	1 cut(s)	232
PpsI	GAGTC	2 cut(s)	126, 472
Psp124BI	GAGCTC	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	230, 687
PsrI	GAACNNNNNNTAC	2 cut(s)	445, 477
PsuI	RGATCY	2 cut(s)	685, 790
PvuI	CGATCG	1 cut(s)	451
RsaI	GTAC	3 cut(s)	137, 314, 608
RsaNI	GTAC	3 cut(s)	136, 313, 607
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	5 cut(s)	60, 94, 448, 685, 790
SchI	GAGTC	2 cut(s)	127, 472
ScrFI	CCNGG	1 cut(s)	776
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	4 cut(s)	541, 655, 666, 780
SfoI	GGCGCC	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	501, 786
SmoI	CTYRAG	2 cut(s)	501, 786
Sse9I	AATT	4 cut(s)	390, 645, 693, 744
SsiI	CCGC	2 cut(s)	270, 554
SspDI	GGCGCC	1 cut(s)	228
SspI	AATATT	1 cut(s)	584
SspMI	CTAG	2 cut(s)	180, 524
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	774
TaaI	ACNGT	2 cut(s)	67, 627
TaiI	ACGT	3 cut(s)	104, 314, 499
TaqI	TCGA	2 cut(s)	249, 451
TasI	AATT	4 cut(s)	390, 645, 693, 744
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	2 cut(s)	17, 836
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TspDTI	ATGAA	6 cut(s)	9, 48, 236, 311, 590, 603
TspGWI	ACGGA	1 cut(s)	389
XapI	RAATTY	1 cut(s)	390
XceI	RCATGY	1 cut(s)	219
XmnI	GAANNNNTTC	3 cut(s)	42, 175, 255
XspI	CTAG	2 cut(s)	180, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.