FvH4_6g22213

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000386
Physical Location & Seq
Reverse (-)
15890113 .. 15892956
2844 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22213.t1

Sequence Viewer

Length: 519 bp
ATGTCCAACCCTAAACCTAGAGGAGAAGCTTGGAAAAACCTCGAAGATGTGTCGTTGTGCATAGCGGTGGTTGCGGTTGGTGAAGACGGTGACAAAGCTACGGGTCAAGAGAAGAAAAAATTATGGGATCGTATATGGGAAGTGTATGAAGCTTGCAAGCCACCCAGTTCCGTTATTAGATCGGGAGGAGGGTGTGAAGCTCGTTGGAGAAAGATTAGACCGGGTTGCACAAGGTGGCGTGAAGCTCTTACCAAAGCGGAAGCCGCTCACGCAAGTGGTGAAAATGCCACCGACTTGCTTGATGCCAAAATTCTCGTCTCCAATTTGTATGATGGATATGTGGATGATCCTGAAAAGGAATTCCCAGTTGGAAAACTTGTTATCGGCCAGAATTTTAAGTGCAGGGTGTCATATGTGGAGCCTTTATCAAAGAGAGCTGAAGTTACCTTGAAGTCATCGAGTGCAAGAAGTTTGTCACAGTGTGCAAAGAATGAGAGCTTTTCTAGTGAGGACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

173

Amino Acids

18.98

Weight (kDa)

7.54

Isoelectric Point (pI)

43.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 266
AciI CCGC 4 cut(s) 65, 74, 257, 264
AclWI GGATC 2 cut(s) 135, 341
AcoI YGGCCR 1 cut(s) 385
AcsI RAATTY 3 cut(s) 309, 359, 391
AcuI CTGAAG 1 cut(s) 459
AdeI CACNNNGTG 2 cut(s) 234, 482
AgsI TTSAA 1 cut(s) 451
AjuI GAANNNNNNNTTGG 2 cut(s) 351, 383
AleI CACNNNNGTG 1 cut(s) 273
AluBI AGCT 7 cut(s) 29, 98, 152, 200, 245, 437, 498
AluI AGCT 7 cut(s) 29, 98, 152, 200, 245, 437, 498
Alw26I GTCTC 1 cut(s) 322
AlwI GGATC 2 cut(s) 135, 341
AoxI GGCC 1 cut(s) 385
ApoI RAATTY 3 cut(s) 309, 359, 391
ArsI GACNNNNNNTTYG 2 cut(s) 300, 332
AsuC2I CCSGG 1 cut(s) 222
AsuHPI GGTGA 3 cut(s) 92, 101, 290
BbsI GAAGAC 1 cut(s) 90
BccI CCATC 1 cut(s) 326
BcnI CCSGG 1 cut(s) 222
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 2 cut(s) 18, 504
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
Bme1390I CCNGG 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 420
BmrFI CCNGG 1 cut(s) 222
BmrI ACTGGG 2 cut(s) 159, 359
BmsI GCATC 1 cut(s) 292
BmuI ACTGGG 2 cut(s) 159, 359
BpiI GAAGAC 1 cut(s) 90
BpuMI CCSGG 1 cut(s) 222
Bse1I ACTGG 2 cut(s) 165, 365
BseGI GGATG 1 cut(s) 349
BseNI ACTGG 2 cut(s) 165, 365
BseRI GAGGAG 2 cut(s) 36, 201
BsgI GTGCAG 1 cut(s) 421
BshFI GGCC 1 cut(s) 387
BsiSI CCGG 1 cut(s) 221
BsmAI GTCTC 1 cut(s) 322
BsmBI CGTCTC 1 cut(s) 322
BsnI GGCC 1 cut(s) 387
Bsp143I GATC 3 cut(s) 127, 179, 346
BspACI CCGC 4 cut(s) 65, 74, 257, 264
BspANI GGCC 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 420
BspPI GGATC 2 cut(s) 135, 341
BsrBI CCGCTC 1 cut(s) 266
BsrI ACTGG 2 cut(s) 165, 365
BssMI GATC 3 cut(s) 127, 179, 346
Bst4CI ACNGT 2 cut(s) 89, 480
BstC8I GCNNGC 2 cut(s) 154, 158
BstF5I GGATG 1 cut(s) 349
BstKTI GATC 3 cut(s) 130, 182, 349
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 3 cut(s) 127, 179, 346
BstMWI GCNNNNNNNGC 3 cut(s) 71, 263, 269
BstSCI CCNGG 1 cut(s) 220
BstV2I GAAGAC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 387
BtsCI GGATG 1 cut(s) 349
BtsIMutI CAGTG 1 cut(s) 485
Cac8I GCNNGC 2 cut(s) 154, 158
DpnI GATC 3 cut(s) 129, 181, 348
DpnII GATC 3 cut(s) 127, 179, 346
DraIII CACNNNGTG 2 cut(s) 234, 482
EaeI YGGCCR 1 cut(s) 385
Eco57I CTGAAG 1 cut(s) 459
EcoRI GAATTC 1 cut(s) 359
Esp3I CGTCTC 1 cut(s) 322
FaiI YATR 9 cut(s) 62, 124, 134, 136, 147, 330, 339, 412, 414
FauNDI CATATG 1 cut(s) 412
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 356
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 2 cut(s) 18, 504
GluI GCNGC 1 cut(s) 264
HaeIII GGCC 1 cut(s) 387
HapII CCGG 1 cut(s) 221
HindIII AAGCTT 2 cut(s) 27, 150
HinfI GANTC 1 cut(s) 512
HpaII CCGG 1 cut(s) 221
HphI GGTGA 3 cut(s) 92, 101, 290
Hpy188III TCNNGA 3 cut(s) 107, 183, 350
HpyCH4III ACNGT 2 cut(s) 89, 480
HpyCH4V TGCA 6 cut(s) 60, 156, 228, 402, 464, 485
HpyF10VI GCNNNNNNNGC 3 cut(s) 71, 263, 269
Kzo9I GATC 3 cut(s) 127, 179, 346
LmnI GCTCC 1 cut(s) 418
LpnPI CCDG 6 cut(s) 178, 234, 363, 378, 388, 401
LweI GCATC 1 cut(s) 292
MaeI CTAG 2 cut(s) 18, 504
MaeIII GTNAC 3 cut(s) 89, 442, 474
MalI GATC 3 cut(s) 129, 181, 348
MbiI CCGCTC 1 cut(s) 266
MboI GATC 3 cut(s) 127, 179, 346
MboII GAAGA 3 cut(s) 56, 95, 124
MluCI AATT 5 cut(s) 119, 309, 322, 359, 391
MlyI GAGTC 1 cut(s) 506
MmeI TCCRAC 3 cut(s) 30, 185, 349
MnlI CCTC 5 cut(s) 14, 50, 179, 182, 502
MseI TTAA 2 cut(s) 396, 517
MslI CAYNNNNRTG 2 cut(s) 65, 273
MspI CCGG 1 cut(s) 221
MspR9I CCNGG 1 cut(s) 222
MwoI GCNNNNNNNGC 3 cut(s) 71, 263, 269
NciI CCSGG 1 cut(s) 222
NdeI CATATG 1 cut(s) 412
NdeII GATC 3 cut(s) 127, 179, 346
NlaIV GGNNCC 1 cut(s) 420
NmuCI GTSAC 2 cut(s) 89, 474
OliI CACNNNNGTG 1 cut(s) 273
PkrI GCNGC 1 cut(s) 265
PleI GAGTC 1 cut(s) 506
PpsI GAGTC 1 cut(s) 506
PspN4I GGNNCC 1 cut(s) 420
RseI CAYNNNNRTG 2 cut(s) 65, 273
SaqAI TTAA 2 cut(s) 396, 517
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 3 cut(s) 127, 179, 346
SchI GAGTC 1 cut(s) 506
ScrFI CCNGG 1 cut(s) 222
SfaNI GCATC 1 cut(s) 292
SmiMI CAYNNNNRTG 2 cut(s) 65, 273
Sse9I AATT 5 cut(s) 119, 309, 322, 359, 391
SsiI CCGC 4 cut(s) 65, 74, 257, 264
SspMI CTAG 2 cut(s) 18, 504
StyD4I CCNGG 1 cut(s) 220
TaaI ACNGT 2 cut(s) 89, 480
TaqI TCGA 2 cut(s) 42, 458
TasI AATT 5 cut(s) 119, 309, 322, 359, 391
TauI GCSGC 1 cut(s) 266
Tru1I TTAA 2 cut(s) 396, 517
Tru9I TTAA 2 cut(s) 396, 517
TscAI CASTG 1 cut(s) 485
TseFI GTSAC 2 cut(s) 89, 474
Tsp45I GTSAC 2 cut(s) 89, 474
TspDTI ATGAA 1 cut(s) 162
TspGWI ACGGA 1 cut(s) 160
TspRI CASTG 1 cut(s) 485
XapI RAATTY 3 cut(s) 309, 359, 391
XspI CTAG 2 cut(s) 18, 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.