pycom15g20370

callose synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000386
Physical Location & Seq
Forward (+)
14553757 .. 14554729
973 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g20370.2

Sequence Viewer

Length: 891 bp
ATGGCAAAAGAGCATGTTAGAGGTCGTAATTGGACCTTTGACGAAGATATTGCTTTATGTTTGGCATGGATTTCGATTAGTGAAGATGGTGCCGTCGGCACCAATCAAAATAGAAAGGTTTTATGGGGTAAAATCGTTGATAAGTTCCATGAAAACTCCAACGCCGGTCGAAGGGAAGTTGGTGGTGTTTATGATCGGTGGAAGATTATCAACAAAGCGTGCACTTTGTGGAAAGGAAGCTTGGAGAGAGCCATGGTTGACATGCCTAGTGGAAGGGGCGCCTCAGAAATTGGTGACAAAGCAATGGCAATTTACAAGACAAGAACTACACCAAAAAATCAAGCTTTTAAGTTGCATCATGCTTGGAACATCCTCAAGGATTGTCCGAGGTGGGGAACCGATGCGAACCAACAATGTGGAAGATTATTTCATAATGAAGCCCCACCCCCAAATGATGTCAATGAAGGTGTGAATTTTGCCGACAATGAAGGTGTCGAACAAATGACCCCAACTTCTTCTTTTGCAAGGCCCCCGGGTAGAGATAAGCAAAAGGAAGCAAAGAGAAAAGGGAAGTCCCAAGATCCGACACATGCACAATTTGCTAGCGAAATGGCAATAATGAAGGAAATCCAGTGCCGTCGGCAAGAAGAATCGGCCCAAATGCTTTTGGCCATGAAGGAACAAGGGGATAGGGAGCAAGAAAGGTACGAAACTAATTTGATAATGGAGGACCTCGACAAATACACTCCAGAGAGGAAGAGATACTTACGTGGTAAGCAAAAGGAAATTTTACGAAGGAATGCCACAAGGAGTATATTTCAAGATGATGATTCATCTCAAGACTATCACCCAAGTCCATCACCAAGTCAAGATGGTGAATATCATTATTAG

Protein Analysis

297

Amino Acids

34.03

Weight (kDa)

8.18

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 89, 98, 278
AclWI GGATC 1 cut(s) 575
AcoI YGGCCR 1 cut(s) 669
AcsI RAATTY 2 cut(s) 472, 786
AcyI GRCGYC 1 cut(s) 279
AdeI CACNNNGTG 1 cut(s) 228
AfaI GTAC 1 cut(s) 707
AfiI CCNNNNNNNGG 2 cut(s) 171, 392
AgsI TTSAA 1 cut(s) 821
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AluBI AGCT 2 cut(s) 240, 344
AluI AGCT 2 cut(s) 240, 344
Alw21I GWGCWC 1 cut(s) 224
Alw44I GTGCAC 1 cut(s) 220
AlwI GGATC 1 cut(s) 575
Ama87I CYCGRG 1 cut(s) 532
AoxI GGCC 3 cut(s) 527, 654, 669
ApaLI GTGCAC 1 cut(s) 220
ApoI RAATTY 2 cut(s) 472, 786
AspLEI GCGC 1 cut(s) 281
AspS9I GGNCC 4 cut(s) 33, 528, 655, 730
AsuC2I CCSGG 2 cut(s) 533, 534
AsuHPI GGTGA 4 cut(s) 305, 839, 852, 887
AsuNHI GCTAGC 1 cut(s) 602
AvaI CYCGRG 1 cut(s) 532
AvaII GGWCC 2 cut(s) 33, 730
BaeGI GKGCMC 1 cut(s) 224
BaeI ACNNNNGTAYC 2 cut(s) 754, 787
BalI TGGCCA 1 cut(s) 671
BanI GGYRCC 3 cut(s) 89, 98, 278
Bbv12I GWGCWC 1 cut(s) 224
BccI CCATC 3 cut(s) 80, 865, 866
BceAI ACGGC 2 cut(s) 77, 621
BcgI CGANNNNNNTGC 4 cut(s) 32, 54, 66, 88
BcnI CCSGG 2 cut(s) 533, 534
BfaI CTAG 2 cut(s) 267, 603
BfoI RGCGCY 1 cut(s) 282
Bme1390I CCNGG 2 cut(s) 533, 534
Bme18I GGWCC 2 cut(s) 33, 730
BmeT110I CYCGRG 1 cut(s) 532
BmgT120I GGNCC 4 cut(s) 33, 528, 655, 730
BmiI GGNNCC 5 cut(s) 91, 100, 280, 397, 530
BmrFI CCNGG 2 cut(s) 533, 534
BmsI GCATC 2 cut(s) 364, 391
BmtI GCTAGC 1 cut(s) 606
BpmI CTGGAG 1 cut(s) 732
BpuEI CTTGAG 2 cut(s) 359, 822
BpuMI CCSGG 2 cut(s) 533, 534
BsaAI YACGTR 1 cut(s) 770
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 4 cut(s) 252, 386, 531, 532
Bsc4I CCNNNNNNNGG 2 cut(s) 171, 392
Bse118I RCCGGY 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 631
Bse3DI GCAATG 1 cut(s) 309
BseDI CCNNGG 4 cut(s) 252, 386, 531, 532
BseGI GGATG 1 cut(s) 369
BseLI CCNNNNNNNGG 2 cut(s) 171, 392
BseMI GCAATG 1 cut(s) 309
BseMII CTCAG 1 cut(s) 297
BseNI ACTGG 1 cut(s) 631
BseSI GKGCMC 1 cut(s) 224
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 3 cut(s) 529, 656, 671
BshNI GGYRCC 3 cut(s) 89, 98, 278
BsiEI CGRYCG 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 224
BsiHKCI CYCGRG 1 cut(s) 532
BsiSI CCGG 2 cut(s) 165, 533
BslFI GGGAC 1 cut(s) 559
BslI CCNNNNNNNGG 2 cut(s) 171, 392
BsmFI GGGAC 1 cut(s) 559
BsmI GAATGC 1 cut(s) 805
BsnI GGCC 3 cut(s) 529, 656, 671
BsoBI CYCGRG 1 cut(s) 532
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 2 cut(s) 193, 580
Bsp19I CCATGG 1 cut(s) 252
BspANI GGCC 3 cut(s) 529, 656, 671
BspCNI CTCAG 1 cut(s) 296
BspLI GGNNCC 5 cut(s) 91, 100, 280, 397, 530
BspOI GCTAGC 1 cut(s) 606
BspPI GGATC 1 cut(s) 575
BspT107I GGYRCC 3 cut(s) 89, 98, 278
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 164
BsrI ACTGG 1 cut(s) 631
BssAI RCCGGY 1 cut(s) 164
BssECI CCNNGG 4 cut(s) 252, 386, 531, 532
BssMI GATC 2 cut(s) 193, 580
BssNI GRCGYC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 252
Bst6I CTCTTC 1 cut(s) 752
BstACI GRCGYC 1 cut(s) 279
BstAPI GCANNNNNTGC 1 cut(s) 599
BstBAI YACGTR 1 cut(s) 770
BstC8I GCNNGC 2 cut(s) 220, 604
BstDEI CTNAG 1 cut(s) 283
BstDSI CCRYGG 1 cut(s) 252
BstF5I GGATG 1 cut(s) 369
BstH2I RGCGCY 1 cut(s) 282
BstHHI GCGC 1 cut(s) 281
BstKTI GATC 2 cut(s) 196, 583
BstMBI GATC 2 cut(s) 193, 580
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 1 cut(s) 599
BstNSI RCATGY 3 cut(s) 17, 265, 593
BstSCI CCNGG 2 cut(s) 531, 532
BstSLI GKGCMC 1 cut(s) 224
BstX2I RGATCY 1 cut(s) 580
BstXI CCANNNNNNTGG 1 cut(s) 416
BstYI RGATCY 1 cut(s) 580
BsuRI GGCC 3 cut(s) 529, 656, 671
BtgI CCRYGG 1 cut(s) 252
BtsCI GGATG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 638
Cac8I GCNNGC 2 cut(s) 220, 604
CfoI GCGC 1 cut(s) 281
Cfr10I RCCGGY 1 cut(s) 164
Cfr13I GGNCC 4 cut(s) 33, 528, 655, 730
Cfr9I CCCGGG 1 cut(s) 532
Csp6I GTAC 1 cut(s) 706
CviAII CATG 8 cut(s) 14, 66, 149, 253, 262, 359, 590, 673
CviJI RGCY 7 cut(s) 240, 251, 344, 440, 529, 656, 671
CviKI_1 RGCY 7 cut(s) 240, 251, 344, 440, 529, 656, 671
CviQI GTAC 1 cut(s) 706
DdeI CTNAG 1 cut(s) 283
DinI GGCGCC 1 cut(s) 280
DpnI GATC 2 cut(s) 195, 582
DpnII GATC 2 cut(s) 193, 580
DraIII CACNNNGTG 1 cut(s) 228
EaeI YGGCCR 1 cut(s) 669
Eam1104I CTCTTC 1 cut(s) 752
EarI CTCTTC 1 cut(s) 752
Eco130I CCWWGG 1 cut(s) 252
Eco47I GGWCC 2 cut(s) 33, 730
Eco88I CYCGRG 1 cut(s) 532
EcoO109I RGGNCCY 2 cut(s) 528, 730
EcoT14I CCWWGG 1 cut(s) 252
EgeI GGCGCC 1 cut(s) 280
EheI GGCGCC 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 8 cut(s) 17, 69, 152, 256, 265, 362, 593, 676
FalI AAGNNNNNCTT 2 cut(s) 749, 781
FaqI GGGAC 1 cut(s) 559
FatI CATG 8 cut(s) 13, 65, 148, 252, 261, 358, 589, 672
FokI GGATG 1 cut(s) 356
FspBI CTAG 2 cut(s) 267, 603
GlaI GCGC 1 cut(s) 280
GsuI CTGGAG 1 cut(s) 732
HaeII RGCGCY 1 cut(s) 282
HaeIII GGCC 3 cut(s) 529, 656, 671
HapII CCGG 2 cut(s) 165, 533
HhaI GCGC 1 cut(s) 281
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 8 cut(s) 17, 69, 152, 256, 265, 362, 593, 676
Hin6I GCGC 1 cut(s) 279
HinP1I GCGC 1 cut(s) 279
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 2 cut(s) 238, 342
HinfI GANTC 2 cut(s) 650, 830
HpaII CCGG 2 cut(s) 165, 533
HphI GGTGA 4 cut(s) 305, 839, 852, 887
Hpy166II GTNNAC 2 cut(s) 222, 259
Hpy188I TCNGA 3 cut(s) 286, 387, 585
Hpy188III TCNNGA 4 cut(s) 749, 821, 839, 869
Hpy8I GTNNAC 2 cut(s) 222, 259
Hpy99I CGWCG 2 cut(s) 98, 642
HpyAV CCTTC 7 cut(s) 165, 267, 458, 482, 616, 670, 789
HpyCH4IV ACGT 1 cut(s) 769
HpyCH4V TGCA 4 cut(s) 222, 355, 524, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 599
HpyF3I CTNAG 1 cut(s) 283
HpySE526I ACGT 1 cut(s) 769
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 8 cut(s) 17, 69, 152, 256, 265, 362, 593, 676
HspAI GCGC 1 cut(s) 279
KasI GGCGCC 1 cut(s) 278
Kzo9I GATC 2 cut(s) 193, 580
LmnI GCTCC 1 cut(s) 694
LpnPI CCDG 4 cut(s) 178, 546, 644, 762
LweI GCATC 2 cut(s) 364, 391
MaeI CTAG 2 cut(s) 267, 603
MaeII ACGT 1 cut(s) 769
MaeIII GTNAC 1 cut(s) 293
MalI GATC 2 cut(s) 195, 582
MboI GATC 2 cut(s) 193, 580
MboII GAAGA 7 cut(s) 56, 95, 214, 432, 507, 659, 769
MflI RGATCY 1 cut(s) 580
MhlI GDGCHC 1 cut(s) 224
MlsI TGGCCA 1 cut(s) 671
MluCI AATT 7 cut(s) 28, 288, 309, 472, 596, 715, 786
MluNI TGGCCA 1 cut(s) 671
Mly113I GGCGCC 1 cut(s) 279
MmeI TCCRAC 2 cut(s) 183, 608
MnlI CCTC 7 cut(s) 14, 292, 381, 383, 721, 743, 747
Mox20I TGGCCA 1 cut(s) 671
MscI TGGCCA 1 cut(s) 671
MseI TTAA 1 cut(s) 348
Msp20I TGGCCA 1 cut(s) 671
MspI CCGG 2 cut(s) 165, 533
MspR9I CCNGG 2 cut(s) 533, 534
Mva1269I GAATGC 1 cut(s) 805
MwoI GCNNNNNNNGC 1 cut(s) 599
NarI GGCGCC 1 cut(s) 279
NciI CCSGG 2 cut(s) 533, 534
NcoI CCATGG 1 cut(s) 252
NdeII GATC 2 cut(s) 193, 580
NheI GCTAGC 1 cut(s) 602
NlaIII CATG 8 cut(s) 17, 69, 152, 256, 265, 362, 593, 676
NlaIV GGNNCC 5 cut(s) 91, 100, 280, 397, 530
NmuCI GTSAC 1 cut(s) 293
NspI RCATGY 3 cut(s) 17, 265, 593
PctI GAATGC 1 cut(s) 805
PfeI GAWTC 2 cut(s) 650, 830
PluTI GGCGCC 1 cut(s) 282
Ppu21I YACGTR 1 cut(s) 770
PpuMI RGGWCCY 1 cut(s) 730
Psp5II RGGWCCY 1 cut(s) 730
PspN4I GGNNCC 5 cut(s) 91, 100, 280, 397, 530
PspPI GGNCC 4 cut(s) 33, 528, 655, 730
PspPPI RGGWCCY 1 cut(s) 730
PsuI RGATCY 1 cut(s) 580
RsaI GTAC 1 cut(s) 707
RsaNI GTAC 1 cut(s) 706
SaqAI TTAA 1 cut(s) 348
Sau3AI GATC 2 cut(s) 193, 580
Sau96I GGNCC 4 cut(s) 33, 528, 655, 730
ScrFI CCNGG 2 cut(s) 533, 534
SduI GDGCHC 1 cut(s) 224
SfaNI GCATC 2 cut(s) 364, 391
SfoI GGCGCC 1 cut(s) 280
SinI GGWCC 2 cut(s) 33, 730
SmaI CCCGGG 1 cut(s) 534
SmlI CTYRAG 2 cut(s) 374, 837
SmoI CTYRAG 2 cut(s) 374, 837
Sse9I AATT 7 cut(s) 28, 288, 309, 472, 596, 715, 786
SspDI GGCGCC 1 cut(s) 278
SspMI CTAG 2 cut(s) 267, 603
StyD4I CCNGG 2 cut(s) 531, 532
StyI CCWWGG 1 cut(s) 252
TaiI ACGT 1 cut(s) 772
TaqI TCGA 4 cut(s) 74, 169, 495, 735
TasI AATT 7 cut(s) 28, 288, 309, 472, 596, 715, 786
TfiI GAWTC 2 cut(s) 650, 830
Tru1I TTAA 1 cut(s) 348
Tru9I TTAA 1 cut(s) 348
TscAI CASTG 1 cut(s) 638
TseFI GTSAC 1 cut(s) 293
Tsp45I GTSAC 1 cut(s) 293
TspDTI ATGAA 8 cut(s) 165, 419, 450, 477, 501, 635, 689, 822
TspMI CCCGGG 1 cut(s) 532
TspRI CASTG 1 cut(s) 638
VneI GTGCAC 1 cut(s) 220
VpaK11BI GGWCC 2 cut(s) 33, 730
XapI RAATTY 2 cut(s) 472, 786
XceI RCATGY 3 cut(s) 17, 265, 593
XmaI CCCGGG 1 cut(s) 532
XspI CTAG 2 cut(s) 267, 603
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.