Rroxscaffold_2G00144280

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000386
Physical Location & Seq
Forward (+)
82201269 .. 82202028
760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00144280.1

Sequence Viewer

Length: 324 bp
ATGCCTAACCCAAGACAAGAGTGTTGGAAGGACGCCGAAGATATAGCCTTGTGCATAGCTGTAGTTACCGTTGGTGAAGACGGCTCTAAGGGTACTAGTCAAGAGAAAAAAAAAATGTGGGAGCGTATACATGAAGTATACGAGACTTGCAAGCCTGCCGGAGCGTGGTTAGATTGGGAGGAGGGTGTGACGGTCGTTGGAAAAAGATTAGACCGGCATGCGCTCGATGGCGTCAAGCTCTTAACAAAGCGGCACTTCTTCGAGGAAGTGGTGATAATGCCACCGACGAGATATTACAAGCTAAGTCAATCTATCGTACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.3

Weight (kDa)

6.29

Isoelectric Point (pI)

53.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 127, 138
AciI CCGC 1 cut(s) 250
AcyI GRCGYC 2 cut(s) 33, 231
AfaI GTAC 2 cut(s) 94, 318
AfiI CCNNNNNNNGG 1 cut(s) 165
AhlI ACTAGT 1 cut(s) 95
AluBI AGCT 3 cut(s) 59, 238, 301
AluI AGCT 3 cut(s) 59, 238, 301
Alw26I GTCTC 1 cut(s) 137
AspLEI GCGC 1 cut(s) 223
AsuHPI GGTGA 2 cut(s) 86, 283
BbsI GAAGAC 1 cut(s) 84
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 97
BcoDI GTCTC 1 cut(s) 137
BcuI ACTAGT 1 cut(s) 95
BfaI CTAG 1 cut(s) 96
BfmI CTRYAG 1 cut(s) 60
BisI GCNGC 1 cut(s) 251
BlsI GCNGC 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 84
BsaHI GRCGYC 2 cut(s) 33, 231
Bsc4I CCNNNNNNNGG 1 cut(s) 165
Bse118I RCCGGY 1 cut(s) 213
BseLI CCNNNNNNNGG 1 cut(s) 165
BseRI GAGGAG 1 cut(s) 194
Bsh1285I CGRYCG 1 cut(s) 195
BsiEI CGRYCG 1 cut(s) 195
BsiSI CCGG 2 cut(s) 159, 214
BslI CCNNNNNNNGG 1 cut(s) 165
BsmAI GTCTC 1 cut(s) 137
BspACI CCGC 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 213
BssNAI GTATAC 2 cut(s) 128, 139
BssNI GRCGYC 2 cut(s) 33, 231
Bst1107I GTATAC 2 cut(s) 128, 139
Bst4CI ACNGT 2 cut(s) 70, 193
BstACI GRCGYC 2 cut(s) 33, 231
BstC8I GCNNGC 3 cut(s) 152, 156, 219
BstDEI CTNAG 3 cut(s) 87, 302, 321
BstHHI GCGC 1 cut(s) 223
BstMAI GTCTC 1 cut(s) 137
BstMCI CGRYCG 1 cut(s) 195
BstNSI RCATGY 1 cut(s) 221
BstSFI CTRYAG 1 cut(s) 60
BstV2I GAAGAC 1 cut(s) 84
BstZ17I GTATAC 2 cut(s) 128, 139
Cac8I GCNNGC 3 cut(s) 152, 156, 219
CfoI GCGC 1 cut(s) 223
Cfr10I RCCGGY 1 cut(s) 213
CseI GACGC 2 cut(s) 41, 220
Csp6I GTAC 2 cut(s) 93, 317
CviAII CATG 2 cut(s) 131, 218
CviJI RGCY 6 cut(s) 47, 59, 84, 154, 238, 301
CviKI_1 RGCY 6 cut(s) 47, 59, 84, 154, 238, 301
CviQI GTAC 2 cut(s) 93, 317
DdeI CTNAG 3 cut(s) 87, 302, 321
FaeI CATG 2 cut(s) 134, 221
FaiI YATR 6 cut(s) 44, 56, 128, 132, 139, 219
FalI AAGNNNNNCTT 2 cut(s) 239, 271
FatI CATG 2 cut(s) 130, 217
FblI GTMKAC 2 cut(s) 127, 138
Fnu4HI GCNGC 1 cut(s) 251
Fsp4HI GCNGC 1 cut(s) 251
FspBI CTAG 1 cut(s) 96
GlaI GCGC 1 cut(s) 222
GluI GCNGC 1 cut(s) 251
HapII CCGG 2 cut(s) 159, 214
HgaI GACGC 2 cut(s) 41, 220
HhaI GCGC 1 cut(s) 223
Hin1I GRCGYC 2 cut(s) 33, 231
Hin1II CATG 2 cut(s) 134, 221
Hin6I GCGC 1 cut(s) 221
HinP1I GCGC 1 cut(s) 221
HpaII CCGG 2 cut(s) 159, 214
HphI GGTGA 2 cut(s) 86, 283
Hpy166II GTNNAC 2 cut(s) 128, 139
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 2 cut(s) 128, 139
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 1 cut(s) 22
HpyCH4III ACNGT 2 cut(s) 70, 193
HpyCH4V TGCA 2 cut(s) 54, 150
HpyF3I CTNAG 3 cut(s) 87, 302, 321
Hsp92I GRCGYC 2 cut(s) 33, 231
Hsp92II CATG 2 cut(s) 134, 221
HspAI GCGC 1 cut(s) 221
LmnI GCTCC 2 cut(s) 121, 161
LpnPI CCDG 3 cut(s) 168, 172, 227
MaeI CTAG 1 cut(s) 96
MaeIII GTNAC 2 cut(s) 64, 187
MboII GAAGA 3 cut(s) 50, 89, 250
MmeI TCCRAC 2 cut(s) 5, 178
MnlI CCTC 3 cut(s) 172, 175, 256
MseI TTAA 1 cut(s) 242
MspI CCGG 2 cut(s) 159, 214
NlaIII CATG 2 cut(s) 134, 221
NmuCI GTSAC 1 cut(s) 187
NspI RCATGY 1 cut(s) 221
PaeI GCATGC 1 cut(s) 221
PkrI GCNGC 1 cut(s) 252
RsaI GTAC 2 cut(s) 94, 318
RsaNI GTAC 2 cut(s) 93, 317
SaqAI TTAA 1 cut(s) 242
SatI GCNGC 1 cut(s) 251
SetI ASST 4 cut(s) 61, 240, 303, 322
SfcI CTRYAG 1 cut(s) 60
SpeI ACTAGT 1 cut(s) 95
SphI GCATGC 1 cut(s) 221
SsiI CCGC 1 cut(s) 250
SspMI CTAG 1 cut(s) 96
TaaI ACNGT 2 cut(s) 70, 193
TaqI TCGA 2 cut(s) 225, 261
TauI GCSGC 1 cut(s) 253
Tru1I TTAA 1 cut(s) 242
Tru9I TTAA 1 cut(s) 242
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 147
XceI RCATGY 1 cut(s) 221
XmiI GTMKAC 2 cut(s) 127, 138
XspI CTAG 1 cut(s) 96
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.