Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00651

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

31461 .. 45110

Gene Structure 13650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G014530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCTCCAAGAGGGGATTCTTGGAGGCACAATGAAGAAGTTATTCTTTGCCAAGCTTGGATCACCGTTGGGGGTGATGGTTGCGTTGGAAAAGATAAAAAGTCGGACTTATTGTGGAGTCGTGTGGCGGAGGAGTACAATGCTCACAAACCGGCCGGTTGCATGGATAGAACACATTCTAGTTGCCACGCTCGTTGGAAGAAAATAAGTCCGGCATGTATGAAGTGGCGCCAAGCTCTTAACAAGGTCGAACACTTTCAACGAAGAAGCGGCGAAAATATGGAGGACGAGCTCATGAATGTTAAATCAACGTACTACGACTCGGAAGGTTGTGATTTTTTGTTTGACCATTGTTGGCAATTCTTGAAAAATACGGAAAAGTTTGGGAAAACGCCATTAATGGATAACACCTACTTTAGTGTTCCTAATCATGTCAACTTGGATGACGATGGAACACCCACTACTGAGGATGAGCTTCCGTCATCAAGAAAGGCACGTCCTCAAGGACAGAAAGCACAGAAGCTAGCTAAGAAAAAAAGCAATAAGCAGGATGTGGATGGCCTTCGAGTTCAAATGCAGAAATGTTATGAACAAACAGAACGCGAGTACCAACAAAGGCAAAGACAGTTTGAGGAAGGTCAACTAATTGAGCAACGCGCTGAGGATGCTCACACGATGCAGGTGGATCCATCAATTTTCACCCCAAGAAAGAGGAGTTATTGGGAGAGGAAGCAACAACAAATAATTGATAAGGAGACACAAACTTCAAGCATCCCGGAACAATCTCAAGATCCTACACCCCCTGAAGGAGACAACACAAACTTGACCACTTATGATCCACTTGGCCAGACATCTTGGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

287

Amino Acids

33.43

Weight (kDa)

6.1

Isoelectric Point (pI)

59.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	113 - 248	9.2e-08	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	670
Acc36I	ACCTGC	1 cut(s)	670
AccB1I	GGYRCC	1 cut(s)	228
AccII	CGCG	2 cut(s)	603, 657
AciI	CCGC	2 cut(s)	128, 270
AclWI	GGATC	5 cut(s)	68, 680, 693, 785, 830
AcoI	YGGCCR	2 cut(s)	153, 844
AcuI	CTGAAG	1 cut(s)	825
AcyI	GRCGYC	1 cut(s)	229
AfaI	GTAC	3 cut(s)	137, 314, 608
AfiI	CCNNNNNNNGG	1 cut(s)	806
AgsI	TTSAA	4 cut(s)	260, 367, 572, 768
AjiI	CACGTC	1 cut(s)	497
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AluBI	AGCT	6 cut(s)	56, 236, 292, 475, 523, 527
AluI	AGCT	6 cut(s)	56, 236, 292, 475, 523, 527
Alw21I	GWGCWC	1 cut(s)	294
Alw26I	GTCTC	2 cut(s)	749, 804
AlwI	GGATC	5 cut(s)	68, 680, 693, 785, 830
AoxI	GGCC	3 cut(s)	153, 559, 844
AseI	ATTAAT	1 cut(s)	398
Asp700I	GAANNNNTTC	3 cut(s)	42, 175, 255
AspLEI	GCGC	2 cut(s)	231, 659
AsuC2I	CCSGG	1 cut(s)	776
AsuHPI	GGTGA	3 cut(s)	55, 86, 691
AsuNHI	GCTAGC	1 cut(s)	523
BaeI	ACNNNNGTAYC	2 cut(s)	590, 623
BalI	TGGCCA	1 cut(s)	846
BamHI	GGATCC	1 cut(s)	685
BanI	GGYRCC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	294
BbvCI	CCTCAGC	1 cut(s)	660
BccI	CCATC	4 cut(s)	71, 443, 551, 697
BcnI	CCSGG	1 cut(s)	776
BcoDI	GTCTC	2 cut(s)	749, 804
BfaI	CTAG	2 cut(s)	180, 524
BfoI	RGCGCY	1 cut(s)	232
BfuAI	ACCTGC	1 cut(s)	670
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
Bme1390I	CCNGG	1 cut(s)	776
BmgBI	CACGTC	1 cut(s)	497
BmiI	GGNNCC	3 cut(s)	6, 230, 687
BmrFI	CCNGG	1 cut(s)	776
BmsI	GCATC	3 cut(s)	655, 666, 780
BmtI	GCTAGC	1 cut(s)	527
Bpu10I	CCTNAGC	1 cut(s)	660
BpuEI	CTTGAG	2 cut(s)	486, 771
BpuMI	CCSGG	1 cut(s)	776
BsaHI	GRCGYC	1 cut(s)	229
Bsc4I	CCNNNNNNNGG	1 cut(s)	806
Bse118I	RCCGGY	2 cut(s)	151, 155
BseGI	GGATG	7 cut(s)	448, 475, 556, 562, 670, 771, 864
BseLI	CCNNNNNNNGG	1 cut(s)	806
BseMII	CTCAG	2 cut(s)	456, 651
BseRI	GAGGAG	2 cut(s)	146, 727
BseX3I	CGGCCG	1 cut(s)	153
Bsh1236I	CGCG	2 cut(s)	603, 657
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	3 cut(s)	155, 561, 846
BshNI	GGYRCC	1 cut(s)	228
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	4 cut(s)	152, 156, 212, 776
BslI	CCNNNNNNNGG	1 cut(s)	806
BsmAI	GTCTC	2 cut(s)	749, 804
BsnI	GGCC	3 cut(s)	155, 561, 846
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	4 cut(s)	60, 685, 790, 835
BspACI	CCGC	2 cut(s)	128, 270
BspANI	GGCC	3 cut(s)	155, 561, 846
BspCNI	CTCAG	2 cut(s)	457, 652
BspFNI	CGCG	2 cut(s)	603, 657
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	3 cut(s)	6, 230, 687
BspMI	ACCTGC	1 cut(s)	670
BspOI	GCTAGC	1 cut(s)	527
BspPI	GGATC	5 cut(s)	68, 680, 693, 785, 830
BspT107I	GGYRCC	1 cut(s)	228
BsrFI	RCCGGY	2 cut(s)	151, 155
BssAI	RCCGGY	2 cut(s)	151, 155
BssMI	GATC	4 cut(s)	60, 685, 790, 835
BssNI	GRCGYC	1 cut(s)	229
Bst4CI	ACNGT	2 cut(s)	67, 627
BstACI	GRCGYC	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	3 cut(s)	465, 528, 660
BstF5I	GGATG	7 cut(s)	448, 475, 556, 562, 670, 771, 864
BstFNI	CGCG	2 cut(s)	603, 657
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	2 cut(s)	231, 659
BstKTI	GATC	4 cut(s)	63, 688, 793, 838
BstMAI	GTCTC	2 cut(s)	749, 804
BstMBI	GATC	4 cut(s)	60, 685, 790, 835
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	1 cut(s)	665
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	1 cut(s)	774
BstUI	CGCG	2 cut(s)	603, 657
BstX2I	RGATCY	2 cut(s)	685, 790
BstYI	RGATCY	2 cut(s)	685, 790
BstZI	CGGCCG	1 cut(s)	153
BsuRI	GGCC	3 cut(s)	155, 561, 846
BtrI	CACGTC	1 cut(s)	497
BtsCI	GGATG	7 cut(s)	448, 475, 556, 562, 670, 771, 864
BveI	ACCTGC	1 cut(s)	670
Cac8I	GCNNGC	1 cut(s)	525
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	2 cut(s)	231, 659
Cfr10I	RCCGGY	2 cut(s)	151, 155
Csp6I	GTAC	3 cut(s)	136, 313, 607
CspCI	CAANNNNNGTGG	2 cut(s)	176, 211
CviAII	CATG	4 cut(s)	163, 216, 295, 431
CviQI	GTAC	3 cut(s)	136, 313, 607
DdeI	CTNAG	3 cut(s)	465, 528, 660
DinI	GGCGCC	1 cut(s)	230
DpnI	GATC	4 cut(s)	62, 687, 792, 837
DpnII	GATC	4 cut(s)	60, 685, 790, 835
EaeI	YGGCCR	2 cut(s)	153, 844
EagI	CGGCCG	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	292
EclXI	CGGCCG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	294
Eco52I	CGGCCG	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	825
EcoICRI	GAGCTC	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	294
EgeI	GGCGCC	1 cut(s)	230
EheI	GGCGCC	1 cut(s)	230
FaeI	CATG	4 cut(s)	166, 219, 298, 434
FaiI	YATR	8 cut(s)	164, 217, 221, 281, 296, 432, 588, 834
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 92, 124
FatI	CATG	4 cut(s)	162, 215, 294, 430
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	6 cut(s)	455, 482, 563, 569, 677, 758
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	2 cut(s)	180, 524
GlaI	GCGC	2 cut(s)	230, 658
GluI	GCNGC	1 cut(s)	271
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	3 cut(s)	155, 561, 846
HapII	CCGG	4 cut(s)	152, 156, 212, 776
HhaI	GCGC	2 cut(s)	231, 659
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	4 cut(s)	166, 219, 298, 434
Hin6I	GCGC	2 cut(s)	229, 657
HinP1I	GCGC	2 cut(s)	229, 657
HincII	GTYRAC	2 cut(s)	436, 641
HindII	GTYRAC	2 cut(s)	436, 641
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	3 cut(s)	17, 118, 320
HpaII	CCGG	4 cut(s)	152, 156, 212, 776
HphI	GGTGA	3 cut(s)	55, 86, 691
Hpy166II	GTNNAC	2 cut(s)	436, 641
Hpy188I	TCNGA	2 cut(s)	106, 325
Hpy188III	TCNNGA	4 cut(s)	295, 364, 486, 788
Hpy8I	GTNNAC	2 cut(s)	436, 641
HpyAV	CCTTC	4 cut(s)	320, 572, 629, 800
HpyCH4III	ACNGT	2 cut(s)	67, 627
HpyCH4IV	ACGT	2 cut(s)	311, 496
HpyCH4V	TGCA	3 cut(s)	162, 577, 679
HpyF10VI	GCNNNNNNNGC	1 cut(s)	665
HpyF3I	CTNAG	3 cut(s)	465, 528, 660
HpySE526I	ACGT	2 cut(s)	311, 496
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	4 cut(s)	166, 219, 298, 434
HspAI	GCGC	2 cut(s)	229, 657
KasI	GGCGCC	1 cut(s)	228
Kzo9I	GATC	4 cut(s)	60, 685, 790, 835
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	8 cut(s)	165, 169, 225, 533, 665, 789, 816, 860
LweI	GCATC	3 cut(s)	655, 666, 780
MaeI	CTAG	2 cut(s)	180, 524
MaeII	ACGT	2 cut(s)	311, 496
MalI	GATC	4 cut(s)	62, 687, 792, 837
MboI	GATC	4 cut(s)	60, 685, 790, 835
MboII	GAAGA	3 cut(s)	47, 211, 276
MflI	RGATCY	2 cut(s)	685, 790
MhlI	GDGCHC	1 cut(s)	294
MlsI	TGGCCA	1 cut(s)	846
MluCI	AATT	4 cut(s)	359, 645, 693, 744
MluNI	TGGCCA	1 cut(s)	846
Mly113I	GGCGCC	1 cut(s)	229
MlyI	GAGTC	2 cut(s)	127, 314
MmeI	TCCRAC	3 cut(s)	67, 84, 176
Mox20I	TGGCCA	1 cut(s)	846
MroXI	GAANNNNTTC	3 cut(s)	42, 175, 255
MscI	TGGCCA	1 cut(s)	846
MseI	TTAA	3 cut(s)	240, 303, 398
Msp20I	TGGCCA	1 cut(s)	846
MspI	CCGG	4 cut(s)	152, 156, 212, 776
MspR9I	CCNGG	1 cut(s)	776
MvnI	CGCG	2 cut(s)	603, 657
MwoI	GCNNNNNNNGC	1 cut(s)	665
NarI	GGCGCC	1 cut(s)	229
NciI	CCSGG	1 cut(s)	776
NdeII	GATC	4 cut(s)	60, 685, 790, 835
NheI	GCTAGC	1 cut(s)	523
NlaIII	CATG	4 cut(s)	166, 219, 298, 434
NlaIV	GGNNCC	3 cut(s)	6, 230, 687
NspI	RCATGY	1 cut(s)	219
PagI	TCATGA	1 cut(s)	294
PaqCI	CACCTGC	1 cut(s)	670
PdmI	GAANNNNTTC	3 cut(s)	42, 175, 255
PfeI	GAWTC	1 cut(s)	17
PfoI	TCCNGGA	1 cut(s)	774
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	2 cut(s)	126, 314
PluTI	GGCGCC	1 cut(s)	232
PpsI	GAGTC	2 cut(s)	126, 314
PshBI	ATTAAT	1 cut(s)	398
Psp124BI	GAGCTC	1 cut(s)	294
PspN4I	GGNNCC	3 cut(s)	6, 230, 687
PsrI	GAACNNNNNNTAC	2 cut(s)	445, 477
PsuI	RGATCY	2 cut(s)	685, 790
RsaI	GTAC	3 cut(s)	137, 314, 608
RsaNI	GTAC	3 cut(s)	136, 313, 607
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	3 cut(s)	240, 303, 398
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	4 cut(s)	60, 685, 790, 835
SchI	GAGTC	2 cut(s)	127, 314
ScrFI	CCNGG	1 cut(s)	776
SduI	GDGCHC	1 cut(s)	294
SfaNI	GCATC	3 cut(s)	655, 666, 780
SfoI	GGCGCC	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	501, 786
SmoI	CTYRAG	2 cut(s)	501, 786
Sse9I	AATT	4 cut(s)	359, 645, 693, 744
SsiI	CCGC	2 cut(s)	128, 270
SspDI	GGCGCC	1 cut(s)	228
SspMI	CTAG	2 cut(s)	180, 524
SstI	GAGCTC	1 cut(s)	294
StyD4I	CCNGG	1 cut(s)	774
TaaI	ACNGT	2 cut(s)	67, 627
TaiI	ACGT	2 cut(s)	314, 499
TaqI	TCGA	2 cut(s)	249, 565
TasI	AATT	4 cut(s)	359, 645, 693, 744
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	3 cut(s)	240, 303, 398
Tru9I	TTAA	3 cut(s)	240, 303, 398
TspDTI	ATGAA	4 cut(s)	48, 236, 311, 603
TspGWI	ACGGA	2 cut(s)	389, 468
VspI	ATTAAT	1 cut(s)	398
XceI	RCATGY	1 cut(s)	219
XmnI	GAANNNNTTC	3 cut(s)	42, 175, 255
XspI	CTAG	2 cut(s)	180, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.