Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014846.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

21360 .. 22094

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014846.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

atggcttcaagaggggattcttggaggcacaatgaagaagttattctttgccaagcttggatcaccgttgggggtgatggttgcgttggaaaagatcaaaagtcagacttattgtggagtcgtgtggcggaggagtacaatgctcacaaaccggctggttgcatggatagaacacattctagttgccacgctcgttggaaaaaaataagtccggcatgtatgaagtggctccaaactcctaacaaggtcgaacactttcaacgaagaagcggcgaaaatatggaggaagagctcatgaatgttaaatcaacgtactacgactcggaaggttgtgattttgtgtttgagtattcttggcaatacttgaaaaatacagaaaagtttggaaaaacgccatcaatggaaaacacccactttagtgttcctaatcatgtcaacttggatgacgatggaacacccactactgaggatgagcttccctcatcaagaaaagcacgtagtcaaggacagaaagctcagaagcttatgaacaaacagaacgcgagtaccaacgaaggcaaagacagtttgaggaaggtcaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

194

Amino Acids

22.23

Weight (kDa)

6.66

Isoelectric Point (pI)

62.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	542
AciI	CCGC	2 cut(s)	128, 270
AclWI	GGATC	1 cut(s)	68
AfaI	GTAC	3 cut(s)	137, 314, 547
AgsI	TTSAA	3 cut(s)	9, 260, 367
AleI	CACNNNNGTG	1 cut(s)	417
AluBI	AGCT	5 cut(s)	56, 292, 475, 515, 523
AluI	AGCT	5 cut(s)	56, 292, 475, 515, 523
Alw21I	GWGCWC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	68
Asp700I	GAANNNNTTC	3 cut(s)	42, 175, 255
AsuHPI	GGTGA	2 cut(s)	55, 86
BaeI	ACNNNNGTAYC	2 cut(s)	529, 562
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	294
BccI	CCATC	3 cut(s)	71, 403, 443
BfaI	CTAG	1 cut(s)	180
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
BmiI	GGNNCC	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
BsaAI	YACGTR	1 cut(s)	497
Bse118I	RCCGGY	1 cut(s)	151
BseGI	GGATG	2 cut(s)	448, 475
BseMII	CTCAG	2 cut(s)	456, 530
BseRI	GAGGAG	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	542
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	2 cut(s)	152, 212
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	60, 94
BspACI	CCGC	2 cut(s)	128, 270
BspCNI	CTCAG	2 cut(s)	457, 529
BspFNI	CGCG	1 cut(s)	542
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	68
BspQI	GCTCTTC	1 cut(s)	282
BsrFI	RCCGGY	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	151
BssMI	GATC	2 cut(s)	60, 94
Bst4CI	ACNGT	2 cut(s)	67, 566
Bst6I	CTCTTC	1 cut(s)	282
BstBAI	YACGTR	1 cut(s)	497
BstDEI	CTNAG	2 cut(s)	465, 516
BstF5I	GGATG	2 cut(s)	448, 475
BstFNI	CGCG	1 cut(s)	542
BstKTI	GATC	2 cut(s)	63, 97
BstMBI	GATC	2 cut(s)	60, 94
BstNSI	RCATGY	1 cut(s)	219
BstUI	CGCG	1 cut(s)	542
BtsCI	GGATG	2 cut(s)	448, 475
CciI	TCATGA	1 cut(s)	294
Cfr10I	RCCGGY	1 cut(s)	151
Csp6I	GTAC	3 cut(s)	136, 313, 546
CspCI	CAANNNNNGTGG	2 cut(s)	176, 211
CviAII	CATG	4 cut(s)	163, 216, 295, 431
CviJI	RGCY	8 cut(s)	5, 56, 155, 229, 292, 475, 515, 523
CviKI_1	RGCY	8 cut(s)	5, 56, 155, 229, 292, 475, 515, 523
CviQI	GTAC	3 cut(s)	136, 313, 546
DdeI	CTNAG	2 cut(s)	465, 516
DpnI	GATC	2 cut(s)	62, 96
DpnII	GATC	2 cut(s)	60, 94
Eam1104I	CTCTTC	1 cut(s)	282
EarI	CTCTTC	1 cut(s)	282
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	292
Eco24I	GRGCYC	1 cut(s)	294
Eco53kI	GAGCTC	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	4 cut(s)	166, 219, 298, 434
FaiI	YATR	7 cut(s)	164, 217, 221, 281, 296, 432, 527
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 92, 124
FatI	CATG	4 cut(s)	162, 215, 294, 430
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	2 cut(s)	455, 482
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	1 cut(s)	180
GluI	GCNGC	1 cut(s)	271
HapII	CCGG	2 cut(s)	152, 212
Hin1II	CATG	4 cut(s)	166, 219, 298, 434
HincII	GTYRAC	2 cut(s)	436, 580
HindII	GTYRAC	2 cut(s)	436, 580
HindIII	AAGCTT	2 cut(s)	54, 521
HinfI	GANTC	3 cut(s)	17, 118, 320
HpaII	CCGG	2 cut(s)	152, 212
HphI	GGTGA	2 cut(s)	55, 86
Hpy166II	GTNNAC	2 cut(s)	436, 580
Hpy188I	TCNGA	3 cut(s)	106, 325, 519
Hpy188III	TCNNGA	3 cut(s)	9, 295, 486
Hpy8I	GTNNAC	2 cut(s)	436, 580
HpyAV	CCTTC	3 cut(s)	320, 548, 568
HpyCH4III	ACNGT	2 cut(s)	67, 566
HpyCH4IV	ACGT	2 cut(s)	311, 496
HpyCH4V	TGCA	1 cut(s)	162
HpyF3I	CTNAG	2 cut(s)	465, 516
HpySE526I	ACGT	2 cut(s)	311, 496
Hsp92II	CATG	4 cut(s)	166, 219, 298, 434
Kzo9I	GATC	2 cut(s)	60, 94
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	234
LpnPI	CCDG	3 cut(s)	141, 165, 225
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	2 cut(s)	311, 496
MalI	GATC	2 cut(s)	62, 96
MboI	GATC	2 cut(s)	60, 94
MboII	GAAGA	3 cut(s)	47, 276, 299
MhlI	GDGCHC	1 cut(s)	294
MlyI	GAGTC	2 cut(s)	127, 314
MmeI	TCCRAC	2 cut(s)	67, 176
MnlI	CCTC	7 cut(s)	5, 18, 124, 277, 460, 490, 564
MroXI	GAANNNNTTC	3 cut(s)	42, 175, 255
MseI	TTAA	1 cut(s)	303
MslI	CAYNNNNRTG	1 cut(s)	417
MspI	CCGG	2 cut(s)	152, 212
MvnI	CGCG	1 cut(s)	542
NdeII	GATC	2 cut(s)	60, 94
NlaIII	CATG	4 cut(s)	166, 219, 298, 434
NlaIV	GGNNCC	1 cut(s)	230
NspI	RCATGY	1 cut(s)	219
OliI	CACNNNNGTG	1 cut(s)	417
PagI	TCATGA	1 cut(s)	294
PciSI	GCTCTTC	1 cut(s)	282
PdmI	GAANNNNTTC	3 cut(s)	42, 175, 255
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	2 cut(s)	126, 314
PpsI	GAGTC	2 cut(s)	126, 314
Ppu21I	YACGTR	1 cut(s)	497
Psp124BI	GAGCTC	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	230
PsrI	GAACNNNNNNTAC	2 cut(s)	445, 477
RsaI	GTAC	3 cut(s)	137, 314, 547
RsaNI	GTAC	3 cut(s)	136, 313, 546
RseI	CAYNNNNRTG	1 cut(s)	417
SacI	GAGCTC	1 cut(s)	294
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	1 cut(s)	303
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	2 cut(s)	60, 94
SchI	GAGTC	2 cut(s)	127, 314
SduI	GDGCHC	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	417
SsiI	CCGC	2 cut(s)	128, 270
SspMI	CTAG	1 cut(s)	180
SstI	GAGCTC	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	67, 566
TaiI	ACGT	2 cut(s)	314, 499
TaqI	TCGA	1 cut(s)	249
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	1 cut(s)	303
Tru9I	TTAA	1 cut(s)	303
TspDTI	ATGAA	4 cut(s)	48, 236, 311, 542
XceI	RCATGY	1 cut(s)	219
XmnI	GAANNNNTTC	3 cut(s)	42, 175, 255
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.