Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000267.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

26424 .. 27093

Gene Structure 670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000267.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

atggctccaagtggggattcttggaggcacaatgaagaagttattctttgccaagcttggatcaccgttgggggtgatggttgcgtcggaaaagatcaaaagtcggagttattgtggagtcgtgaggcggaggagtacaatgctcacaaatcggccggttgcatggatagaacacattctagttgccacgctcgttggaagaaaataagtccggcatgtatgaagtggcgccaagctcttaacaaggtcgaacactttcaacgaagaagcggcgaaaatatggaggacgagctcatgaatgttaaatcaacatactacaactcggaaggttgtgattttttgtttgaccattgttggcaatacttgaaaattacggaaaagtttgggaaaacgccatcaatggataacacctactttagtgttcctaatcatgtcaacttggatgacgatggaatacccactactgaggatgagcttccgtcatcaagaaaggcacgtcctcaaggacagaaagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

172

Amino Acids

19.75

Weight (kDa)

5.97

Isoelectric Point (pI)

62.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	228
AciI	CCGC	2 cut(s)	128, 270
AclWI	GGATC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	229
AfaI	GTAC	1 cut(s)	137
AgsI	TTSAA	2 cut(s)	260, 367
AjiI	CACGTC	1 cut(s)	497
AjuI	GAANNNNNNNTTGG	1 cut(s)	33
AluBI	AGCT	4 cut(s)	56, 236, 292, 475
AluI	AGCT	4 cut(s)	56, 236, 292, 475
Alw21I	GWGCWC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	68
AoxI	GGCC	1 cut(s)	153
Asp700I	GAANNNNTTC	3 cut(s)	42, 175, 255
AspLEI	GCGC	1 cut(s)	231
AsuHPI	GGTGA	2 cut(s)	55, 86
BanI	GGYRCC	1 cut(s)	228
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	294
BccI	CCATC	3 cut(s)	71, 403, 443
BfaI	CTAG	1 cut(s)	180
BfoI	RGCGCY	1 cut(s)	232
BisI	GCNGC	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	272
BmgBI	CACGTC	1 cut(s)	497
BmiI	GGNNCC	2 cut(s)	6, 230
BpuEI	CTTGAG	1 cut(s)	486
BsaHI	GRCGYC	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bse118I	RCCGGY	1 cut(s)	155
BseGI	GGATG	2 cut(s)	448, 475
BseMII	CTCAG	1 cut(s)	456
BseRI	GAGGAG	1 cut(s)	146
BseX3I	CGGCCG	1 cut(s)	153
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	228
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	294
BsiSI	CCGG	2 cut(s)	156, 212
BsnI	GGCC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp143I	GATC	2 cut(s)	60, 94
BspACI	CCGC	2 cut(s)	128, 270
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	1 cut(s)	457
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	6, 230
BspPI	GGATC	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	228
BsrFI	RCCGGY	1 cut(s)	155
BssAI	RCCGGY	1 cut(s)	155
BssMI	GATC	2 cut(s)	60, 94
BssNI	GRCGYC	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	67
BstACI	GRCGYC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	465
BstF5I	GGATG	2 cut(s)	448, 475
BstH2I	RGCGCY	1 cut(s)	232
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	2 cut(s)	63, 97
BstMBI	GATC	2 cut(s)	60, 94
BstMCI	CGRYCG	1 cut(s)	156
BstNSI	RCATGY	1 cut(s)	219
BstZI	CGGCCG	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	155
BtrI	CACGTC	1 cut(s)	497
BtsCI	GGATG	2 cut(s)	448, 475
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	155
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	136
CspCI	CAANNNNNGTGG	2 cut(s)	176, 211
CviAII	CATG	4 cut(s)	163, 216, 295, 431
CviJI	RGCY	6 cut(s)	5, 56, 155, 236, 292, 475
CviKI_1	RGCY	6 cut(s)	5, 56, 155, 236, 292, 475
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	465
DinI	GGCGCC	1 cut(s)	230
DpnI	GATC	2 cut(s)	62, 96
DpnII	GATC	2 cut(s)	60, 94
EaeI	YGGCCR	1 cut(s)	153
EagI	CGGCCG	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	292
EclXI	CGGCCG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	294
Eco52I	CGGCCG	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	294
EgeI	GGCGCC	1 cut(s)	230
EheI	GGCGCC	1 cut(s)	230
FaeI	CATG	4 cut(s)	166, 219, 298, 434
FaiI	YATR	8 cut(s)	164, 217, 221, 281, 296, 313, 432, 517
FalI	AAGNNNNNCTT	2 cut(s)	30, 62
FatI	CATG	4 cut(s)	162, 215, 294, 430
Fnu4HI	GCNGC	1 cut(s)	271
FokI	GGATG	2 cut(s)	455, 482
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	271
FspBI	CTAG	1 cut(s)	180
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	271
HaeII	RGCGCY	1 cut(s)	232
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	2 cut(s)	156, 212
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	231
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	4 cut(s)	166, 219, 298, 434
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HincII	GTYRAC	1 cut(s)	436
HindII	GTYRAC	1 cut(s)	436
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	2 cut(s)	17, 118
HpaII	CCGG	2 cut(s)	156, 212
HphI	GGTGA	2 cut(s)	55, 86
Hpy166II	GTNNAC	1 cut(s)	436
Hpy188I	TCNGA	3 cut(s)	89, 106, 325
Hpy188III	TCNNGA	3 cut(s)	122, 295, 486
Hpy8I	GTNNAC	1 cut(s)	436
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	320
HpyCH4III	ACNGT	1 cut(s)	67
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	1 cut(s)	162
HpyF3I	CTNAG	1 cut(s)	465
HpySE526I	ACGT	1 cut(s)	496
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	4 cut(s)	166, 219, 298, 434
HspAI	GCGC	1 cut(s)	229
KasI	GGCGCC	1 cut(s)	228
Kzo9I	GATC	2 cut(s)	60, 94
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	2 cut(s)	169, 225
MaeI	CTAG	1 cut(s)	180
MaeII	ACGT	1 cut(s)	496
MalI	GATC	2 cut(s)	62, 96
MboI	GATC	2 cut(s)	60, 94
MboII	GAAGA	3 cut(s)	47, 211, 276
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	1 cut(s)	369
Mly113I	GGCGCC	1 cut(s)	229
MlyI	GAGTC	1 cut(s)	127
MmeI	TCCRAC	3 cut(s)	67, 84, 176
MnlI	CCTC	6 cut(s)	18, 118, 124, 277, 460, 510
MroXI	GAANNNNTTC	3 cut(s)	42, 175, 255
MseI	TTAA	2 cut(s)	240, 303
MspI	CCGG	2 cut(s)	156, 212
NarI	GGCGCC	1 cut(s)	229
NdeII	GATC	2 cut(s)	60, 94
NlaIII	CATG	4 cut(s)	166, 219, 298, 434
NlaIV	GGNNCC	2 cut(s)	6, 230
NspI	RCATGY	1 cut(s)	219
PagI	TCATGA	1 cut(s)	294
PdmI	GAANNNNTTC	3 cut(s)	42, 175, 255
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	1 cut(s)	272
PleI	GAGTC	1 cut(s)	126
PluTI	GGCGCC	1 cut(s)	232
PpsI	GAGTC	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	6, 230
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	240, 303
SatI	GCNGC	1 cut(s)	271
Sau3AI	GATC	2 cut(s)	60, 94
SchI	GAGTC	1 cut(s)	127
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	8 cut(s)	58, 238, 249, 294, 331, 413, 477, 499
SfoI	GGCGCC	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	501
SmoI	CTYRAG	1 cut(s)	501
Sse9I	AATT	1 cut(s)	369
SsiI	CCGC	2 cut(s)	128, 270
SspDI	GGCGCC	1 cut(s)	228
SspMI	CTAG	1 cut(s)	180
SstI	GAGCTC	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	67
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	1 cut(s)	249
TasI	AATT	1 cut(s)	369
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	1 cut(s)	273
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	240, 303
Tru9I	TTAA	2 cut(s)	240, 303
TspDTI	ATGAA	3 cut(s)	48, 236, 311
TspGWI	ACGGA	2 cut(s)	389, 468
XceI	RCATGY	1 cut(s)	219
XmnI	GAANNNNTTC	3 cut(s)	42, 175, 255
XspI	CTAG	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.