RINT-1 / TIP-1 family
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 982 |
| AccBSI | CCGCTC | 1 cut(s) | 898 |
| AccII | CGCG | 1 cut(s) | 1025 |
| AccIII | TCCGGA | 1 cut(s) | 1340 |
| AciI | CCGC | 4 cut(s) | 101, 639, 898, 1132 |
| AclWI | GGATC | 6 cut(s) | 200, 272, 907, 985, 1338, 1351 |
| AcoI | YGGCCR | 2 cut(s) | 351, 366 |
| AcsI | RAATTY | 6 cut(s) | 169, 696, 706, 728, 1214, 1373 |
| AcuI | CTGAAG | 1 cut(s) | 1035 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 89, 112, 842, 926, 959 |
| AgsI | TTSAA | 6 cut(s) | 406, 518, 694, 1246, 1264, 1361 |
| AjnI | CCWGG | 2 cut(s) | 925, 1146 |
| AluBI | AGCT | 4 cut(s) | 41, 540, 815, 1041 |
| AluI | AGCT | 4 cut(s) | 41, 540, 815, 1041 |
| Alw21I | GWGCWC | 3 cut(s) | 292, 817, 1043 |
| Alw26I | GTCTC | 1 cut(s) | 276 |
| Alw44I | GTGCAC | 1 cut(s) | 288 |
| AlwI | GGATC | 6 cut(s) | 200, 272, 907, 985, 1338, 1351 |
| Ama87I | CYCGRG | 3 cut(s) | 229, 903, 920 |
| Aor13HI | TCCGGA | 1 cut(s) | 1340 |
| AoxI | GGCC | 5 cut(s) | 224, 351, 366, 900, 1028 |
| ApaI | GGGCCC | 1 cut(s) | 904 |
| ApaLI | GTGCAC | 1 cut(s) | 288 |
| ApoI | RAATTY | 6 cut(s) | 169, 696, 706, 728, 1214, 1373 |
| AseI | ATTAAT | 3 cut(s) | 411, 585, 647 |
| AspLEI | GCGC | 1 cut(s) | 1025 |
| AspS9I | GGNCC | 5 cut(s) | 103, 225, 427, 900, 901 |
| AsuC2I | CCSGG | 4 cut(s) | 230, 231, 904, 905 |
| AsuHPI | GGTGA | 3 cut(s) | 536, 549, 857 |
| AsuII | TTCGAA | 1 cut(s) | 826 |
| AsuNHI | GCTAGC | 1 cut(s) | 299 |
| AvaI | CYCGRG | 3 cut(s) | 229, 903, 920 |
| AvaII | GGWCC | 2 cut(s) | 103, 427 |
| AxyI | CCTNAGG | 1 cut(s) | 1060 |
| BaeGI | GKGCMC | 2 cut(s) | 292, 904 |
| BalI | TGGCCA | 1 cut(s) | 368 |
| BamHI | GGATCC | 1 cut(s) | 1343 |
| BanII | GRGCYC | 4 cut(s) | 805, 817, 904, 1043 |
| BauI | CACGAG | 1 cut(s) | 798 |
| BbsI | GAAGAC | 1 cut(s) | 587 |
| Bbv12I | GWGCWC | 3 cut(s) | 292, 817, 1043 |
| BccI | CCATC | 5 cut(s) | 217, 415, 562, 563, 835 |
| BciT130I | CCWGG | 2 cut(s) | 927, 1148 |
| BcnI | CCSGG | 4 cut(s) | 230, 231, 904, 905 |
| BcoDI | GTCTC | 1 cut(s) | 276 |
| BfaI | CTAG | 3 cut(s) | 300, 794, 1020 |
| Bme1390I | CCNGG | 6 cut(s) | 230, 231, 904, 905, 927, 1148 |
| Bme18I | GGWCC | 2 cut(s) | 103, 427 |
| BmeT110I | CYCGRG | 3 cut(s) | 229, 903, 920 |
| BmgT120I | GGNCC | 5 cut(s) | 103, 225, 427, 900, 901 |
| BmiI | GGNNCC | 5 cut(s) | 227, 902, 1057, 1184, 1345 |
| BmrFI | CCNGG | 6 cut(s) | 230, 231, 904, 905, 927, 1148 |
| BmrI | ACTGGG | 1 cut(s) | 863 |
| BmsI | GCATC | 3 cut(s) | 61, 88, 487 |
| BmtI | GCTAGC | 1 cut(s) | 303 |
| BmuI | ACTGGG | 1 cut(s) | 863 |
| BpiI | GAAGAC | 1 cut(s) | 587 |
| BpmI | CTGGAG | 1 cut(s) | 429 |
| Bpu14I | TTCGAA | 1 cut(s) | 826 |
| BpuEI | CTTGAG | 2 cut(s) | 56, 258 |
| BpuMI | CCSGG | 4 cut(s) | 230, 231, 904, 905 |
| Bsa29I | ATCGAT | 1 cut(s) | 204 |
| BsaAI | YACGTR | 2 cut(s) | 287, 467 |
| BsaJI | CCNNGG | 4 cut(s) | 83, 228, 229, 903 |
| BsaWI | WCCGGW | 1 cut(s) | 1340 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 89, 112, 842, 926, 959 |
| Bse1I | ACTGG | 4 cut(s) | 824, 858, 964, 1050 |
| Bse21I | CCTNAGG | 1 cut(s) | 1060 |
| BseAI | TCCGGA | 1 cut(s) | 1340 |
| BseBI | CCWGG | 2 cut(s) | 927, 1148 |
| BseCI | ATCGAT | 1 cut(s) | 204 |
| BseDI | CCNNGG | 4 cut(s) | 83, 228, 229, 903 |
| BseGI | GGATG | 5 cut(s) | 66, 502, 935, 987, 1156 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 89, 112, 842, 926, 959 |
| BseMII | CTCAG | 1 cut(s) | 1191 |
| BseNI | ACTGG | 4 cut(s) | 824, 858, 964, 1050 |
| BseSI | GKGCMC | 2 cut(s) | 292, 904 |
| Bsh1236I | CGCG | 1 cut(s) | 1025 |
| BshFI | GGCC | 5 cut(s) | 226, 353, 368, 902, 1030 |
| BshVI | ATCGAT | 1 cut(s) | 204 |
| BsiHKAI | GWGCWC | 3 cut(s) | 292, 817, 1043 |
| BsiHKCI | CYCGRG | 3 cut(s) | 229, 903, 920 |
| BsiSI | CCGG | 3 cut(s) | 230, 904, 1341 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 89, 112, 842, 926, 959 |
| BsmAI | GTCTC | 1 cut(s) | 276 |
| BsnI | GGCC | 5 cut(s) | 226, 353, 368, 902, 1030 |
| BsoBI | CYCGRG | 3 cut(s) | 229, 903, 920 |
| Bsp119I | TTCGAA | 1 cut(s) | 826 |
| Bsp120I | GGGCCC | 1 cut(s) | 900 |
| Bsp1286I | GDGCHC | 5 cut(s) | 292, 805, 817, 904, 1043 |
| Bsp13I | TCCGGA | 1 cut(s) | 1340 |
| Bsp143I | GATC | 6 cut(s) | 201, 205, 277, 912, 990, 1343 |
| BspACI | CCGC | 4 cut(s) | 101, 639, 898, 1132 |
| BspANI | GGCC | 5 cut(s) | 226, 353, 368, 902, 1030 |
| BspCNI | CTCAG | 1 cut(s) | 1192 |
| BspDI | ATCGAT | 1 cut(s) | 204 |
| BspEI | TCCGGA | 1 cut(s) | 1340 |
| BspFNI | CGCG | 1 cut(s) | 1025 |
| BspLI | GGNNCC | 5 cut(s) | 227, 902, 1057, 1184, 1345 |
| BspOI | GCTAGC | 1 cut(s) | 303 |
| BspPI | GGATC | 6 cut(s) | 200, 272, 907, 985, 1338, 1351 |
| BspT104I | TTCGAA | 1 cut(s) | 826 |
| BsrBI | CCGCTC | 1 cut(s) | 898 |
| BsrI | ACTGG | 4 cut(s) | 824, 858, 964, 1050 |
| BssECI | CCNNGG | 4 cut(s) | 83, 228, 229, 903 |
| BssMI | GATC | 6 cut(s) | 201, 205, 277, 912, 990, 1343 |
| BssSI | CACGAG | 1 cut(s) | 798 |
| Bst2BI | CACGAG | 1 cut(s) | 798 |
| Bst2UI | CCWGG | 2 cut(s) | 927, 1148 |
| Bst4CI | ACNGT | 3 cut(s) | 889, 1109, 1195 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 296 |
| BstBAI | YACGTR | 2 cut(s) | 287, 467 |
| BstBI | TTCGAA | 1 cut(s) | 826 |
| BstC8I | GCNNGC | 2 cut(s) | 301, 900 |
| BstDEI | CTNAG | 2 cut(s) | 1060, 1200 |
| BstEII | GGTNACC | 1 cut(s) | 845 |
| BstF5I | GGATG | 5 cut(s) | 66, 502, 935, 987, 1156 |
| BstFNI | CGCG | 1 cut(s) | 1025 |
| BstHHI | GCGC | 1 cut(s) | 1025 |
| BstKTI | GATC | 6 cut(s) | 204, 208, 280, 915, 993, 1346 |
| BstMAI | GTCTC | 1 cut(s) | 276 |
| BstMBI | GATC | 6 cut(s) | 201, 205, 277, 912, 990, 1343 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 296 |
| BstNI | CCWGG | 2 cut(s) | 927, 1148 |
| BstPI | GGTNACC | 1 cut(s) | 845 |
| BstSCI | CCNGG | 6 cut(s) | 228, 229, 902, 903, 925, 1146 |
| BstSLI | GKGCMC | 2 cut(s) | 292, 904 |
| BstUI | CGCG | 1 cut(s) | 1025 |
| BstV2I | GAAGAC | 1 cut(s) | 587 |
| BstX2I | RGATCY | 2 cut(s) | 277, 1343 |
| BstYI | RGATCY | 2 cut(s) | 277, 1343 |
| Bsu15I | ATCGAT | 1 cut(s) | 204 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1060 |
| BsuRI | GGCC | 5 cut(s) | 226, 353, 368, 902, 1030 |
| BsuTUI | ATCGAT | 1 cut(s) | 204 |
| BtsCI | GGATG | 5 cut(s) | 66, 502, 935, 987, 1156 |
| BtsIMutI | CAGTG | 4 cut(s) | 817, 851, 957, 1043 |
| Cac8I | GCNNGC | 2 cut(s) | 301, 900 |
| CfoI | GCGC | 1 cut(s) | 1025 |
| Cfr13I | GGNCC | 5 cut(s) | 103, 225, 427, 900, 901 |
| Cfr9I | CCCGGG | 2 cut(s) | 229, 903 |
| ClaI | ATCGAT | 1 cut(s) | 204 |
| CviAII | CATG | 3 cut(s) | 56, 370, 838 |
| DdeI | CTNAG | 2 cut(s) | 1060, 1200 |
| DpnI | GATC | 6 cut(s) | 203, 207, 279, 914, 992, 1345 |
| DpnII | GATC | 6 cut(s) | 201, 205, 277, 912, 990, 1343 |
| DraI | TTTAAA | 3 cut(s) | 711, 733, 1371 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 982 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 982 |
| EaeI | YGGCCR | 2 cut(s) | 351, 366 |
| Ecl136II | GAGCTC | 2 cut(s) | 815, 1041 |
| Eco147I | AGGCCT | 1 cut(s) | 1030 |
| Eco24I | GRGCYC | 4 cut(s) | 805, 817, 904, 1043 |
| Eco47I | GGWCC | 2 cut(s) | 103, 427 |
| Eco53kI | GAGCTC | 2 cut(s) | 815, 1041 |
| Eco57I | CTGAAG | 1 cut(s) | 1035 |
| Eco81I | CCTNAGG | 1 cut(s) | 1060 |
| Eco88I | CYCGRG | 3 cut(s) | 229, 903, 920 |
| Eco91I | GGTNACC | 1 cut(s) | 845 |
| EcoICRI | GAGCTC | 2 cut(s) | 815, 1041 |
| EcoO109I | RGGNCCY | 2 cut(s) | 225, 427 |
| EcoO65I | GGTNACC | 1 cut(s) | 845 |
| EcoRII | CCWGG | 2 cut(s) | 925, 1146 |
| EcoT38I | GRGCYC | 4 cut(s) | 805, 817, 904, 1043 |
| FaeI | CATG | 3 cut(s) | 59, 373, 841 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 446, 478 |
| FatI | CATG | 3 cut(s) | 55, 369, 837 |
| FauI | CCCGC | 1 cut(s) | 891 |
| FokI | GGATG | 5 cut(s) | 53, 509, 942, 994, 1163 |
| FriOI | GRGCYC | 4 cut(s) | 805, 817, 904, 1043 |
| FspBI | CTAG | 3 cut(s) | 300, 794, 1020 |
| GlaI | GCGC | 1 cut(s) | 1024 |
| GsuI | CTGGAG | 1 cut(s) | 429 |
| HaeIII | GGCC | 5 cut(s) | 226, 353, 368, 902, 1030 |
| HapII | CCGG | 3 cut(s) | 230, 904, 1341 |
| HhaI | GCGC | 1 cut(s) | 1025 |
| Hin1II | CATG | 3 cut(s) | 59, 373, 841 |
| Hin6I | GCGC | 1 cut(s) | 1023 |
| HinP1I | GCGC | 1 cut(s) | 1023 |
| HindIII | AAGCTT | 1 cut(s) | 39 |
| HinfI | GANTC | 5 cut(s) | 347, 527, 576, 1239, 1337 |
| HpaII | CCGG | 3 cut(s) | 230, 904, 1341 |
| HphI | GGTGA | 3 cut(s) | 536, 549, 857 |
| Hpy166II | GTNNAC | 1 cut(s) | 290 |
| Hpy188I | TCNGA | 7 cut(s) | 84, 705, 772, 949, 1071, 1173, 1201 |
| Hpy188III | TCNNGA | 5 cut(s) | 275, 446, 518, 566, 1341 |
| Hpy8I | GTNNAC | 1 cut(s) | 290 |
| Hpy99I | CGWCG | 1 cut(s) | 979 |
| HpyAV | CCTTC | 5 cut(s) | 155, 367, 486, 1078, 1168 |
| HpyCH4III | ACNGT | 3 cut(s) | 889, 1109, 1195 |
| HpyCH4IV | ACGT | 2 cut(s) | 286, 466 |
| HpyCH4V | TGCA | 3 cut(s) | 52, 290, 1354 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 296 |
| HpyF3I | CTNAG | 2 cut(s) | 1060, 1200 |
| HpySE526I | ACGT | 2 cut(s) | 286, 466 |
| Hsp92II | CATG | 3 cut(s) | 59, 373, 841 |
| HspAI | GCGC | 1 cut(s) | 1023 |
| Kpn2I | TCCGGA | 1 cut(s) | 1340 |
| Kzo9I | GATC | 6 cut(s) | 201, 205, 277, 912, 990, 1343 |
| LmnI | GCTCC | 4 cut(s) | 391, 812, 895, 1182 |
| LweI | GCATC | 3 cut(s) | 61, 88, 487 |
| MaeI | CTAG | 3 cut(s) | 300, 794, 1020 |
| MaeII | ACGT | 2 cut(s) | 286, 466 |
| MaeIII | GTNAC | 3 cut(s) | 845, 932, 1153 |
| MalI | GATC | 6 cut(s) | 203, 207, 279, 914, 992, 1345 |
| MbiI | CCGCTC | 1 cut(s) | 898 |
| MboI | GATC | 6 cut(s) | 201, 205, 277, 912, 990, 1343 |
| MboII | GAAGA | 7 cut(s) | 129, 197, 204, 356, 466, 587, 1234 |
| MflI | RGATCY | 2 cut(s) | 277, 1343 |
| MhlI | GDGCHC | 5 cut(s) | 292, 805, 817, 904, 1043 |
| MlsI | TGGCCA | 1 cut(s) | 368 |
| MluNI | TGGCCA | 1 cut(s) | 368 |
| MmeI | TCCRAC | 1 cut(s) | 1160 |
| MnlI | CCTC | 8 cut(s) | 78, 80, 418, 444, 972, 1020, 1105, 1357 |
| Mox20I | TGGCCA | 1 cut(s) | 368 |
| MroI | TCCGGA | 1 cut(s) | 1340 |
| MscI | TGGCCA | 1 cut(s) | 368 |
| Msp20I | TGGCCA | 1 cut(s) | 368 |
| MspI | CCGG | 3 cut(s) | 230, 904, 1341 |
| MspR9I | CCNGG | 6 cut(s) | 230, 231, 904, 905, 927, 1148 |
| MvaI | CCWGG | 2 cut(s) | 927, 1148 |
| MvnI | CGCG | 1 cut(s) | 1025 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 296 |
| NciI | CCSGG | 4 cut(s) | 230, 231, 904, 905 |
| NdeII | GATC | 6 cut(s) | 201, 205, 277, 912, 990, 1343 |
| NheI | GCTAGC | 1 cut(s) | 299 |
| NlaIII | CATG | 3 cut(s) | 59, 373, 841 |
| NlaIV | GGNNCC | 5 cut(s) | 227, 902, 1057, 1184, 1345 |
| NmeAIII | GCCGAG | 1 cut(s) | 316 |
| NmuCI | GTSAC | 3 cut(s) | 845, 932, 1153 |
| NspV | TTCGAA | 1 cut(s) | 826 |
| PceI | AGGCCT | 1 cut(s) | 1030 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 983 |
| PfeI | GAWTC | 5 cut(s) | 347, 527, 576, 1239, 1337 |
| Ppu21I | YACGTR | 2 cut(s) | 287, 467 |
| PpuMI | RGGWCCY | 1 cut(s) | 427 |
| PshBI | ATTAAT | 3 cut(s) | 411, 585, 647 |
| Psp124BI | GAGCTC | 2 cut(s) | 817, 1043 |
| Psp5II | RGGWCCY | 1 cut(s) | 427 |
| Psp6I | CCWGG | 2 cut(s) | 925, 1146 |
| PspEI | GGTNACC | 1 cut(s) | 845 |
| PspGI | CCWGG | 2 cut(s) | 925, 1146 |
| PspN4I | GGNNCC | 5 cut(s) | 227, 902, 1057, 1184, 1345 |
| PspOMI | GGGCCC | 1 cut(s) | 900 |
| PspPI | GGNCC | 5 cut(s) | 103, 225, 427, 900, 901 |
| PspPPI | RGGWCCY | 1 cut(s) | 427 |
| PsuI | RGATCY | 2 cut(s) | 277, 1343 |
| SacI | GAGCTC | 2 cut(s) | 817, 1043 |
| Sau3AI | GATC | 6 cut(s) | 201, 205, 277, 912, 990, 1343 |
| Sau96I | GGNCC | 5 cut(s) | 103, 225, 427, 900, 901 |
| ScrFI | CCNGG | 6 cut(s) | 230, 231, 904, 905, 927, 1148 |
| SduI | GDGCHC | 5 cut(s) | 292, 805, 817, 904, 1043 |
| SfaNI | GCATC | 3 cut(s) | 61, 88, 487 |
| SfuI | TTCGAA | 1 cut(s) | 826 |
| SinI | GGWCC | 2 cut(s) | 103, 427 |
| SmaI | CCCGGG | 2 cut(s) | 231, 905 |
| SmiI | ATTTAAAT | 1 cut(s) | 711 |
| SmlI | CTYRAG | 2 cut(s) | 71, 273 |
| SmoI | CTYRAG | 2 cut(s) | 71, 273 |
| SseBI | AGGCCT | 1 cut(s) | 1030 |
| SsiI | CCGC | 4 cut(s) | 101, 639, 898, 1132 |
| SspI | AATATT | 2 cut(s) | 715, 1231 |
| SspMI | CTAG | 3 cut(s) | 300, 794, 1020 |
| SstI | GAGCTC | 2 cut(s) | 817, 1043 |
| StuI | AGGCCT | 1 cut(s) | 1030 |
| StyD4I | CCNGG | 6 cut(s) | 228, 229, 902, 903, 925, 1146 |
| SwaI | ATTTAAAT | 1 cut(s) | 711 |
| TaaI | ACNGT | 3 cut(s) | 889, 1109, 1195 |
| TaiI | ACGT | 2 cut(s) | 289, 469 |
| TaqI | TCGA | 4 cut(s) | 192, 204, 826, 986 |
| TfiI | GAWTC | 5 cut(s) | 347, 527, 576, 1239, 1337 |
| TscAI | CASTG | 4 cut(s) | 824, 858, 964, 1050 |
| TseFI | GTSAC | 3 cut(s) | 845, 932, 1153 |
| Tsp45I | GTSAC | 3 cut(s) | 845, 932, 1153 |
| TspDTI | ATGAA | 9 cut(s) | 116, 174, 198, 332, 336, 386, 519, 743, 1350 |
| TspMI | CCCGGG | 2 cut(s) | 229, 903 |
| TspRI | CASTG | 4 cut(s) | 824, 858, 964, 1050 |
| VneI | GTGCAC | 1 cut(s) | 288 |
| VpaK11BI | GGWCC | 2 cut(s) | 103, 427 |
| VspI | ATTAAT | 3 cut(s) | 411, 585, 647 |
| XapI | RAATTY | 6 cut(s) | 169, 696, 706, 728, 1214, 1373 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 361 |
| XmaI | CCCGGG | 2 cut(s) | 229, 903 |
| XspI | CTAG | 3 cut(s) | 300, 794, 1020 |