Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010071.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

1551 .. 7179

Gene Structure 5629 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010071.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1578 bp

atgaaccgccgttcacgaaccacccaccagtcctcgccgaaccggaaactccaacccggcgacgatcctggcgaaatcttgcctctctccagcgtcgccgaactagaactccgatatggaacgtcgaactcgatgagacccggtcgatccggtcttttgtggtcgccggagtttgccggaggttggacggagactcgccggaagttggccggagttgactggagacctcaccggagaggagagagagaatgctccaccgtggactccaccttagacgatggccaccgcttcattccggactcgtccacttcagcttgctcaatttcactccgaaaccaaaaccctaatcccaatttcccccaaatttaccaaaccgctaaggttttccgtgctcagtttcatgtcttggtcaatgggtttgtggttctgaaagtcagtaactttggatttgggggtgtattacgtccaatggttagggagtacttgatttgggaccttgttgctaatcctgcaatgtatgtgagtgatgggaaagttgtgggtttcaatgggttggctaagcaagctcttcaagttgtgcataaggtcaatgtgggaggtcataaagtgacggcctttaatgatagtctgactgagaacagtggcccgggaccacgctttctgattacccagcccaataagtggagtgacgcgctggatgagttttgtgggcagcacgcgcagcagggagaagatgggaggaggaagacgcgcctacttgcgctggagagagaaaaagcagctggtggtggtctgctccagtgggccccgcggggctcatcggatttattgtggagtcgtgtggcggaggagtacaatgctcacagaccggccggttgcatggagagaacacattctagttgccactctcgttggaagagaataagtccggcatgtatgaagtggcgccaagctcttaagaaggtcgaacactttcaacgaagaagcggtgaaaatatggaggatgagctcatgaatgttaaatcaacgtactacgactcggaaggttgcgattttgtgtttgagcattgttggcaatacttgaaaaatacggaaaagtttgggaaaacgccatcaatggaaaacacccactttagtcctaatcatgtcaacttggatagcgatgaaacacccactactgaggatgagcttccctcatcaagaaaggcacgtcctcaaggacagaaagctcagaagctagctaagaaaaaaagcaataagcaggatgcggatggcctacgagttcaaatgcagaaatgttatgaacaaaccgaacgcgagtaccaacaaaggcaaagacagtttgaggaaggtcaactaattgagcaacgcgctgaggatgctcgcacgatgcaggtggatccatcaattttcaccccaagaaagaggagttattgggagaggaagcaacaacaaataattgataaggaggccgaaacttcaagcatcccggaacaatctcaatatcctacaccccctgaaggagacaacactggattgaccacttatgatccacttggcgagacatcttggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

525

Amino Acids

59.89

Weight (kDa)

8.7

Isoelectric Point (pI)

56.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1384
Acc36I	ACCTGC	1 cut(s)	1384
AccB1I	GGYRCC	1 cut(s)	945
AccB7I	CCANNNNNTGG	1 cut(s)	681
AccII	CGCG	6 cut(s)	692, 719, 751, 811, 1317, 1371
AccIII	TCCGGA	1 cut(s)	295
AciI	CCGC	8 cut(s)	7, 286, 375, 809, 811, 845, 987, 1268
AclWI	GGATC	5 cut(s)	59, 141, 1394, 1407, 1544
AcoI	YGGCCR	3 cut(s)	207, 280, 870
AcsI	RAATTY	1 cut(s)	363
AcuI	CTGAAG	2 cut(s)	294, 1539
AcyI	GRCGYC	1 cut(s)	946
AfaI	GTAC	4 cut(s)	482, 854, 1031, 1322
AfiI	CCNNNNNNNGG	4 cut(s)	183, 205, 681, 1520
AflII	CTTAAG	1 cut(s)	956
AgsI	TTSAA	6 cut(s)	547, 572, 977, 1084, 1286, 1482
AjiI	CACGTC	1 cut(s)	1211
AjnI	CCWGG	1 cut(s)	67
AloI	GAACNNNNNNTCC	2 cut(s)	93, 125
AluBI	AGCT	9 cut(s)	314, 566, 782, 953, 1009, 1189, 1229, 1237, 1241
AluI	AGCT	9 cut(s)	314, 566, 782, 953, 1009, 1189, 1229, 1237, 1241
Alw21I	GWGCWC	2 cut(s)	394, 1011
Alw26I	GTCTC	5 cut(s)	130, 185, 217, 1518, 1556
AlwI	GGATC	5 cut(s)	59, 141, 1394, 1407, 1544
Ama87I	CYCGRG	1 cut(s)	646
Aor13HI	TCCGGA	1 cut(s)	295
AoxI	GGCC	8 cut(s)	207, 280, 612, 643, 804, 870, 1273, 1470
ApaI	GGGCCC	1 cut(s)	808
ApeKI	GCWGC	3 cut(s)	712, 721, 779
ApoI	RAATTY	1 cut(s)	363
Asp700I	GAANNNNTTC	2 cut(s)	892, 972
AspLEI	GCGC	6 cut(s)	694, 721, 753, 763, 948, 1373
AspS9I	GGNCC	5 cut(s)	493, 644, 650, 804, 805
AsuC2I	CCSGG	5 cut(s)	57, 141, 647, 648, 1490
AsuHPI	GGTGA	3 cut(s)	221, 1001, 1405
AsuNHI	GCTAGC	1 cut(s)	1237
AvaI	CYCGRG	1 cut(s)	646
AvaII	GGWCC	2 cut(s)	493, 650
BaeGI	GKGCMC	1 cut(s)	808
BaeI	ACNNNNGTAYC	2 cut(s)	1304, 1337
BalI	TGGCCA	1 cut(s)	282
BamHI	GGATCC	1 cut(s)	1399
BanI	GGYRCC	1 cut(s)	945
BanII	GRGCYC	3 cut(s)	808, 818, 1011
BbsI	GAAGAC	1 cut(s)	752
Bbv12I	GWGCWC	2 cut(s)	394, 1011
BbvCI	CCTCAGC	1 cut(s)	1374
BbvI	GCAGC	3 cut(s)	724, 733, 791
BccI	CCATC	6 cut(s)	272, 521, 728, 1120, 1265, 1411
BceAI	ACGGC	1 cut(s)	627
BciT130I	CCWGG	1 cut(s)	69
BcnI	CCSGG	5 cut(s)	57, 141, 647, 648, 1490
BcoDI	GTCTC	5 cut(s)	130, 185, 217, 1518, 1556
BfaI	CTAG	3 cut(s)	104, 897, 1238
BfoI	RGCGCY	1 cut(s)	949
BfrI	CTTAAG	1 cut(s)	956
BfuAI	ACCTGC	1 cut(s)	1384
BisI	GCNGC	3 cut(s)	713, 722, 780
BlpI	GCTNAGC	1 cut(s)	558
BlsI	GCNGC	3 cut(s)	714, 723, 781
BmcAI	AGTACT	1 cut(s)	482
Bme1390I	CCNGG	6 cut(s)	57, 69, 141, 647, 648, 1490
Bme18I	GGWCC	2 cut(s)	493, 650
BmeT110I	CYCGRG	1 cut(s)	646
BmgBI	CACGTC	1 cut(s)	1211
BmgT120I	GGNCC	5 cut(s)	493, 644, 650, 804, 805
BmiI	GGNNCC	6 cut(s)	494, 651, 806, 807, 947, 1401
BmrFI	CCNGG	6 cut(s)	57, 69, 141, 647, 648, 1490
BmsI	GCATC	4 cut(s)	1255, 1369, 1380, 1494
BmtI	GCTAGC	1 cut(s)	1241
BpiI	GAAGAC	1 cut(s)	752
BplI	GAGNNNNNCTC	2 cut(s)	1178, 1210
BpmI	CTGGAG	4 cut(s)	73, 241, 782, 785
Bpu10I	CCTNAGC	2 cut(s)	378, 1374
Bpu1102I	GCTNAGC	1 cut(s)	558
BpuEI	CTTGAG	1 cut(s)	1200
BpuMI	CCSGG	5 cut(s)	57, 141, 647, 648, 1490
BsaHI	GRCGYC	1 cut(s)	946
BsaI	GGTCTC	2 cut(s)	130, 217
BsaJI	CCNNGG	3 cut(s)	258, 646, 809
BsaWI	WCCGGW	4 cut(s)	42, 149, 231, 295
BsaXI	ACNNNNNCTCC	2 cut(s)	93, 123
Bsc4I	CCNNNNNNNGG	4 cut(s)	183, 205, 681, 1520
Bse118I	RCCGGY	2 cut(s)	868, 872
Bse1I	ACTGG	4 cut(s)	28, 224, 799, 1537
Bse3DI	GCAATG	1 cut(s)	519
BseAI	TCCGGA	1 cut(s)	295
BseBI	CCWGG	1 cut(s)	69
BseDI	CCNNGG	3 cut(s)	258, 646, 809
BseGI	GGATG	8 cut(s)	703, 1009, 1189, 1270, 1276, 1384, 1485, 1578
BseLI	CCNNNNNNNGG	4 cut(s)	183, 205, 681, 1520
BseMI	GCAATG	1 cut(s)	519
BseMII	CTCAG	5 cut(s)	407, 624, 1170, 1244, 1365
BseNI	ACTGG	4 cut(s)	28, 224, 799, 1537
BseRI	GAGGAG	4 cut(s)	252, 754, 863, 1441
BseSI	GKGCMC	1 cut(s)	808
BseX3I	CGGCCG	1 cut(s)	870
BseXI	GCAGC	3 cut(s)	724, 733, 791
BseYI	CCCAGC	1 cut(s)	669
Bsh1236I	CGCG	6 cut(s)	692, 719, 751, 811, 1317, 1371
Bsh1285I	CGRYCG	2 cut(s)	145, 873
BshFI	GGCC	8 cut(s)	209, 282, 614, 645, 806, 872, 1275, 1472
BshNI	GGYRCC	1 cut(s)	945
BsiEI	CGRYCG	2 cut(s)	145, 873
BsiHKAI	GWGCWC	2 cut(s)	394, 1011
BsiHKCI	CYCGRG	1 cut(s)	646
BslFI	GGGAC	2 cut(s)	506, 663
BslI	CCNNNNNNNGG	4 cut(s)	183, 205, 681, 1520
BsmAI	GTCTC	5 cut(s)	130, 185, 217, 1518, 1556
BsmFI	GGGAC	2 cut(s)	506, 663
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	8 cut(s)	209, 282, 614, 645, 806, 872, 1275, 1472
Bso31I	GGTCTC	2 cut(s)	130, 217
BsoBI	CYCGRG	1 cut(s)	646
Bsp120I	GGGCCC	1 cut(s)	804
Bsp1286I	GDGCHC	4 cut(s)	394, 808, 818, 1011
Bsp13I	TCCGGA	1 cut(s)	295
Bsp143I	GATC	4 cut(s)	64, 146, 1399, 1549
Bsp1720I	GCTNAGC	1 cut(s)	558
BspACI	CCGC	8 cut(s)	7, 286, 375, 809, 811, 845, 987, 1268
BspANI	GGCC	8 cut(s)	209, 282, 614, 645, 806, 872, 1275, 1472
BspCNI	CTCAG	5 cut(s)	406, 625, 1171, 1243, 1366
BspEI	TCCGGA	1 cut(s)	295
BspFNI	CGCG	6 cut(s)	692, 719, 751, 811, 1317, 1371
BspHI	TCATGA	1 cut(s)	1011
BspLI	GGNNCC	6 cut(s)	494, 651, 806, 807, 947, 1401
BspMI	ACCTGC	1 cut(s)	1384
BspOI	GCTAGC	1 cut(s)	1241
BspPI	GGATC	5 cut(s)	59, 141, 1394, 1407, 1544
BspQI	GCTCTTC	1 cut(s)	573
BspT107I	GGYRCC	1 cut(s)	945
BspTI	CTTAAG	1 cut(s)	956
BspTNI	GGTCTC	2 cut(s)	130, 217
BsrDI	GCAATG	1 cut(s)	519
BsrFI	RCCGGY	2 cut(s)	868, 872
BsrI	ACTGG	4 cut(s)	28, 224, 799, 1537
BssAI	RCCGGY	2 cut(s)	868, 872
BssECI	CCNNGG	3 cut(s)	258, 646, 809
BssMI	GATC	4 cut(s)	64, 146, 1399, 1549
BssNI	GRCGYC	1 cut(s)	946
Bst2UI	CCWGG	1 cut(s)	69
Bst4CI	ACNGT	3 cut(s)	259, 641, 1341
Bst6I	CTCTTC	2 cut(s)	573, 911
BstACI	GRCGYC	1 cut(s)	946
BstAFI	CTTAAG	1 cut(s)	956
BstC8I	GCNNGC	5 cut(s)	316, 564, 717, 1239, 1384
BstDEI	CTNAG	9 cut(s)	271, 378, 393, 558, 633, 1179, 1230, 1242, 1374
BstDSI	CCRYGG	2 cut(s)	258, 809
BstF5I	GGATG	8 cut(s)	703, 1009, 1189, 1270, 1276, 1384, 1485, 1578
BstFNI	CGCG	6 cut(s)	692, 719, 751, 811, 1317, 1371
BstH2I	RGCGCY	1 cut(s)	949
BstHHI	GCGC	6 cut(s)	694, 721, 753, 763, 948, 1373
BstKTI	GATC	4 cut(s)	67, 149, 1402, 1552
BstMAI	GTCTC	5 cut(s)	130, 185, 217, 1518, 1556
BstMBI	GATC	4 cut(s)	64, 146, 1399, 1549
BstMCI	CGRYCG	2 cut(s)	145, 873
BstMWI	GCNNNNNNNGC	6 cut(s)	509, 563, 718, 721, 1072, 1379
BstNI	CCWGG	1 cut(s)	69
BstNSI	RCATGY	1 cut(s)	936
BstSCI	CCNGG	6 cut(s)	55, 67, 139, 645, 646, 1488
BstSLI	GKGCMC	1 cut(s)	808
BstUI	CGCG	6 cut(s)	692, 719, 751, 811, 1317, 1371
BstV1I	GCAGC	3 cut(s)	724, 733, 791
BstV2I	GAAGAC	1 cut(s)	752
BstX2I	RGATCY	1 cut(s)	1399
BstYI	RGATCY	1 cut(s)	1399
BstZI	CGGCCG	1 cut(s)	870
BsuRI	GGCC	8 cut(s)	209, 282, 614, 645, 806, 872, 1275, 1472
BtgI	CCRYGG	2 cut(s)	258, 809
BtgZI	GCGATG	1 cut(s)	1176
BtrI	CACGTC	1 cut(s)	1211
BtsCI	GGATG	8 cut(s)	703, 1009, 1189, 1270, 1276, 1384, 1485, 1578
BtsIMutI	CAGTG	3 cut(s)	646, 806, 1530
BveI	ACCTGC	1 cut(s)	1384
Cac8I	GCNNGC	5 cut(s)	316, 564, 717, 1239, 1384
CciI	TCATGA	1 cut(s)	1011
CfoI	GCGC	6 cut(s)	694, 721, 753, 763, 948, 1373
Cfr10I	RCCGGY	2 cut(s)	868, 872
Cfr13I	GGNCC	5 cut(s)	493, 644, 650, 804, 805
Cfr42I	CCGCGG	1 cut(s)	812
Cfr9I	CCCGGG	1 cut(s)	646
CseI	GACGC	3 cut(s)	82, 698, 757
Csp6I	GTAC	4 cut(s)	481, 853, 1030, 1321
CspCI	CAANNNNNGTGG	2 cut(s)	893, 928
CviAII	CATG	5 cut(s)	401, 880, 933, 1012, 1145
CviQI	GTAC	4 cut(s)	481, 853, 1030, 1321
DdeI	CTNAG	9 cut(s)	271, 378, 393, 558, 633, 1179, 1230, 1242, 1374
DinI	GGCGCC	1 cut(s)	947
DpnI	GATC	4 cut(s)	66, 148, 1401, 1551
DpnII	GATC	4 cut(s)	64, 146, 1399, 1549
EaeI	YGGCCR	3 cut(s)	207, 280, 870
EagI	CGGCCG	1 cut(s)	870
Eam1104I	CTCTTC	2 cut(s)	573, 911
EarI	CTCTTC	2 cut(s)	573, 911
EciI	GGCGGA	1 cut(s)	860
Ecl136II	GAGCTC	1 cut(s)	1009
EclXI	CGGCCG	1 cut(s)	870
Eco24I	GRGCYC	3 cut(s)	808, 818, 1011
Eco31I	GGTCTC	2 cut(s)	130, 217
Eco47I	GGWCC	2 cut(s)	493, 650
Eco52I	CGGCCG	1 cut(s)	870
Eco53kI	GAGCTC	1 cut(s)	1009
Eco57I	CTGAAG	2 cut(s)	294, 1539
Eco88I	CYCGRG	1 cut(s)	646
EcoICRI	GAGCTC	1 cut(s)	1009
EcoO109I	RGGNCCY	2 cut(s)	493, 805
EcoRII	CCWGG	1 cut(s)	67
EcoT38I	GRGCYC	3 cut(s)	808, 818, 1011
EgeI	GGCGCC	1 cut(s)	947
EheI	GGCGCC	1 cut(s)	947
FaeI	CATG	5 cut(s)	404, 883, 936, 1015, 1148
FaqI	GGGAC	2 cut(s)	506, 663
FatI	CATG	5 cut(s)	400, 879, 932, 1011, 1144
FauI	CCCGC	2 cut(s)	804, 816
Fnu4HI	GCNGC	3 cut(s)	713, 722, 780
FokI	GGATG	7 cut(s)	710, 1016, 1196, 1277, 1283, 1391, 1472
FriOI	GRGCYC	3 cut(s)	808, 818, 1011
Fsp4HI	GCNGC	3 cut(s)	713, 722, 780
FspBI	CTAG	3 cut(s)	104, 897, 1238
GlaI	GCGC	6 cut(s)	693, 720, 752, 762, 947, 1372
GluI	GCNGC	3 cut(s)	713, 722, 780
GsaI	CCCAGC	1 cut(s)	673
GsuI	CTGGAG	4 cut(s)	73, 241, 782, 785
HaeII	RGCGCY	1 cut(s)	949
HaeIII	GGCC	8 cut(s)	209, 282, 614, 645, 806, 872, 1275, 1472
HgaI	GACGC	3 cut(s)	82, 698, 757
HhaI	GCGC	6 cut(s)	694, 721, 753, 763, 948, 1373
Hin1I	GRCGYC	1 cut(s)	946
Hin1II	CATG	5 cut(s)	404, 883, 936, 1015, 1148
Hin6I	GCGC	6 cut(s)	692, 719, 751, 761, 946, 1371
HinP1I	GCGC	6 cut(s)	692, 719, 751, 761, 946, 1371
HincII	GTYRAC	3 cut(s)	217, 1150, 1355
HindII	GTYRAC	3 cut(s)	217, 1150, 1355
HinfI	GANTC	5 cut(s)	193, 263, 299, 835, 1037
HphI	GGTGA	3 cut(s)	221, 1001, 1405
Hpy166II	GTNNAC	6 cut(s)	14, 217, 262, 306, 1150, 1355
Hpy188I	TCNGA	8 cut(s)	113, 332, 429, 630, 663, 823, 1042, 1233
Hpy188III	TCNNGA	4 cut(s)	15, 296, 1012, 1200
Hpy8I	GTNNAC	6 cut(s)	14, 217, 262, 306, 1150, 1355
Hpy99I	CGWCG	3 cut(s)	65, 98, 127
HpyAV	CCTTC	4 cut(s)	955, 1037, 1343, 1514
HpyCH4III	ACNGT	3 cut(s)	259, 641, 1341
HpyCH4IV	ACGT	4 cut(s)	122, 463, 1028, 1210
HpyCH4V	TGCA	5 cut(s)	512, 580, 879, 1291, 1393
HpyF10VI	GCNNNNNNNGC	6 cut(s)	509, 563, 718, 721, 1072, 1379
HpyF3I	CTNAG	9 cut(s)	271, 378, 393, 558, 633, 1179, 1230, 1242, 1374
HpySE526I	ACGT	4 cut(s)	122, 463, 1028, 1210
Hsp92I	GRCGYC	1 cut(s)	946
Hsp92II	CATG	5 cut(s)	404, 883, 936, 1015, 1148
HspAI	GCGC	6 cut(s)	692, 719, 751, 761, 946, 1371
KasI	GGCGCC	1 cut(s)	945
Kpn2I	TCCGGA	1 cut(s)	295
KspI	CCGCGG	1 cut(s)	812
Kzo9I	GATC	4 cut(s)	64, 146, 1399, 1549
LguI	GCTCTTC	1 cut(s)	573
LmnI	GCTCC	2 cut(s)	257, 801
Lsp1109I	GCAGC	3 cut(s)	724, 733, 791
LweI	GCATC	4 cut(s)	1255, 1369, 1380, 1494
MaeI	CTAG	3 cut(s)	104, 897, 1238
MaeII	ACGT	4 cut(s)	122, 463, 1028, 1210
MaeIII	GTNAC	3 cut(s)	437, 607, 686
MalI	GATC	4 cut(s)	66, 148, 1401, 1551
MboI	GATC	4 cut(s)	64, 146, 1399, 1549
MboII	GAAGA	5 cut(s)	560, 743, 757, 928, 993
MflI	RGATCY	1 cut(s)	1399
MhlI	GDGCHC	4 cut(s)	394, 808, 818, 1011
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	6 cut(s)	321, 352, 363, 1359, 1407, 1458
MluNI	TGGCCA	1 cut(s)	282
Mly113I	GGCGCC	1 cut(s)	946
MlyI	GAGTC	5 cut(s)	187, 257, 293, 844, 1031
MmeI	TCCRAC	3 cut(s)	76, 164, 893
Mox20I	TGGCCA	1 cut(s)	282
MroI	TCCGGA	1 cut(s)	295
MroXI	GAANNNNTTC	2 cut(s)	892, 972
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	3 cut(s)	618, 957, 1020
Msp20I	TGGCCA	1 cut(s)	282
MspA1I	CMGCKG	2 cut(s)	782, 811
MspCI	CTTAAG	1 cut(s)	956
MspR9I	CCNGG	6 cut(s)	57, 69, 141, 647, 648, 1490
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	1 cut(s)	69
MvnI	CGCG	6 cut(s)	692, 719, 751, 811, 1317, 1371
MwoI	GCNNNNNNNGC	6 cut(s)	509, 563, 718, 721, 1072, 1379
NarI	GGCGCC	1 cut(s)	946
NciI	CCSGG	5 cut(s)	57, 141, 647, 648, 1490
NdeII	GATC	4 cut(s)	64, 146, 1399, 1549
NheI	GCTAGC	1 cut(s)	1237
NlaIII	CATG	5 cut(s)	404, 883, 936, 1015, 1148
NlaIV	GGNNCC	6 cut(s)	494, 651, 806, 807, 947, 1401
NmuCI	GTSAC	2 cut(s)	607, 686
NspI	RCATGY	1 cut(s)	936
PagI	TCATGA	1 cut(s)	1011
PaqCI	CACCTGC	1 cut(s)	1384
PciSI	GCTCTTC	1 cut(s)	573
PcsI	WCGNNNNNNNCGW	2 cut(s)	69, 128
PctI	GAATGC	1 cut(s)	254
PdmI	GAANNNNTTC	2 cut(s)	892, 972
PflFI	GACNNNGTC	1 cut(s)	141
PflMI	CCANNNNNTGG	1 cut(s)	681
PfoI	TCCNGGA	1 cut(s)	1488
PkrI	GCNGC	3 cut(s)	714, 723, 781
PleI	GAGTC	5 cut(s)	187, 257, 293, 843, 1031
PluTI	GGCGCC	1 cut(s)	949
PpsI	GAGTC	5 cut(s)	187, 257, 293, 843, 1031
PpuMI	RGGWCCY	1 cut(s)	493
Psp124BI	GAGCTC	1 cut(s)	1011
Psp5II	RGGWCCY	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	67
PspFI	CCCAGC	1 cut(s)	669
PspGI	CCWGG	1 cut(s)	67
PspN4I	GGNNCC	6 cut(s)	494, 651, 806, 807, 947, 1401
PspOMI	GGGCCC	1 cut(s)	804
PspPI	GGNCC	5 cut(s)	493, 644, 650, 804, 805
PspPPI	RGGWCCY	1 cut(s)	493
PsuI	RGATCY	1 cut(s)	1399
PsyI	GACNNNGTC	1 cut(s)	141
PvuII	CAGCTG	1 cut(s)	782
RsaI	GTAC	4 cut(s)	482, 854, 1031, 1322
RsaNI	GTAC	4 cut(s)	481, 853, 1030, 1321
SacI	GAGCTC	1 cut(s)	1011
SacII	CCGCGG	1 cut(s)	812
SapI	GCTCTTC	1 cut(s)	573
SaqAI	TTAA	3 cut(s)	618, 957, 1020
SatI	GCNGC	3 cut(s)	713, 722, 780
Sau3AI	GATC	4 cut(s)	64, 146, 1399, 1549
Sau96I	GGNCC	5 cut(s)	493, 644, 650, 804, 805
ScaI	AGTACT	1 cut(s)	482
SchI	GAGTC	5 cut(s)	187, 257, 293, 844, 1031
ScrFI	CCNGG	6 cut(s)	57, 69, 141, 647, 648, 1490
SduI	GDGCHC	4 cut(s)	394, 808, 818, 1011
SfaNI	GCATC	4 cut(s)	1255, 1369, 1380, 1494
SfoI	GGCGCC	1 cut(s)	947
Sfr303I	CCGCGG	1 cut(s)	812
SgrBI	CCGCGG	1 cut(s)	812
SinI	GGWCC	2 cut(s)	493, 650
SmaI	CCCGGG	1 cut(s)	648
SmlI	CTYRAG	2 cut(s)	956, 1215
SmoI	CTYRAG	2 cut(s)	956, 1215
Sse9I	AATT	6 cut(s)	321, 352, 363, 1359, 1407, 1458
SsiI	CCGC	8 cut(s)	7, 286, 375, 809, 811, 845, 987, 1268
SspDI	GGCGCC	1 cut(s)	945
SspMI	CTAG	3 cut(s)	104, 897, 1238
SstI	GAGCTC	1 cut(s)	1011
StyD4I	CCNGG	6 cut(s)	55, 67, 139, 645, 646, 1488
TaaI	ACNGT	3 cut(s)	259, 641, 1341
TaiI	ACGT	4 cut(s)	125, 466, 1031, 1213
TaqI	TCGA	4 cut(s)	125, 131, 145, 966
TasI	AATT	6 cut(s)	321, 352, 363, 1359, 1407, 1458
TatI	WGTACW	2 cut(s)	480, 852
Tru1I	TTAA	3 cut(s)	618, 957, 1020
Tru9I	TTAA	3 cut(s)	618, 957, 1020
TscAI	CASTG	3 cut(s)	646, 806, 1537
TseFI	GTSAC	2 cut(s)	607, 686
TseI	GCWGC	3 cut(s)	712, 721, 779
Tsp45I	GTSAC	2 cut(s)	607, 686
TspDTI	ATGAA	7 cut(s)	17, 280, 389, 953, 1028, 1179, 1317
TspGWI	ACGGA	3 cut(s)	203, 377, 1106
TspMI	CCCGGG	1 cut(s)	646
TspRI	CASTG	3 cut(s)	646, 806, 1537
Tth111I	GACNNNGTC	1 cut(s)	141
Van91I	CCANNNNNTGG	1 cut(s)	681
Vha464I	CTTAAG	1 cut(s)	956
VpaK11BI	GGWCC	2 cut(s)	493, 650
XapI	RAATTY	1 cut(s)	363
XceI	RCATGY	1 cut(s)	936
XmaI	CCCGGG	1 cut(s)	646
XmnI	GAANNNNTTC	2 cut(s)	892, 972
XspI	CTAG	3 cut(s)	104, 897, 1238
ZrmI	AGTACT	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.