Rmu_sc0007034.1_g000017

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007034.1
OG0000386
Physical Location & Seq
Reverse (-)
67301 .. 68059
759 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007034.1_g000017.1.cds

Sequence Viewer

Length: 333 bp
atgtctcagcccagatgccgaacgaacgagcggaatgaagaaaatgaaggaaacgcgcgccaaagggagaaggaagagacagcacgcgcggaaggcgcgctggagagagaagattccgagctttccgtctgctgccctgggcccctcgcctgcgcagctgtcccctgctccaagaggggattgaggcacaatgaagaagttattctttgccaagcttggatcaccgttgggggtgatggttgcgttggaaaatatcaaaagtcggacttattgtggagtcgtgtggcggaggagtacaatatatgctcacaaacgggccggttgcatggatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.24

Weight (kDa)

5.45

Isoelectric Point (pI)

55.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 154
AccBSI CCGCTC 1 cut(s) 31
AccII CGCG 5 cut(s) 56, 58, 87, 89, 98
AciI CCGC 3 cut(s) 31, 89, 287
AclWI GGATC 1 cut(s) 227
AfaI GTAC 1 cut(s) 296
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 3 cut(s) 121, 158, 215
AluI AGCT 3 cut(s) 121, 158, 215
Alw26I GTCTC 2 cut(s) 9, 71
AlwI GGATC 1 cut(s) 227
AoxI GGCC 2 cut(s) 140, 316
ApaI GGGCCC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 132, 155
Asp700I GAANNNNTTC 1 cut(s) 201
AspLEI GCGC 6 cut(s) 58, 60, 89, 98, 100, 155
AspS9I GGNCC 3 cut(s) 140, 141, 316
AsuHPI GGTGA 2 cut(s) 214, 245
BaeGI GKGCMC 1 cut(s) 144
BanII GRGCYC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 119, 167
BccI CCATC 1 cut(s) 230
BciT130I CCWGG 1 cut(s) 138
BcoDI GTCTC 2 cut(s) 9, 71
BisI GCNGC 2 cut(s) 133, 156
BlsI GCNGC 2 cut(s) 134, 157
Bme1390I CCNGG 1 cut(s) 138
BmgT120I GGNCC 3 cut(s) 140, 141, 316
BmiI GGNNCC 2 cut(s) 142, 143
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 1 cut(s) 5
BpmI CTGGAG 1 cut(s) 122
BsaJI CCNNGG 2 cut(s) 136, 137
Bse118I RCCGGY 1 cut(s) 318
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 136, 137
BseMII CTCAG 1 cut(s) 20
BsePI GCGCGC 2 cut(s) 56, 96
BseRI GAGGAG 1 cut(s) 305
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 2 cut(s) 119, 167
Bsh1236I CGCG 5 cut(s) 56, 58, 87, 89, 98
BshFI GGCC 2 cut(s) 142, 318
BsiSI CCGG 1 cut(s) 319
BslFI GGGAC 1 cut(s) 146
BsmAI GTCTC 2 cut(s) 9, 71
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 2 cut(s) 142, 318
Bsp120I GGGCCC 1 cut(s) 140
Bsp1286I GDGCHC 1 cut(s) 144
Bsp143I GATC 1 cut(s) 219
BspACI CCGC 3 cut(s) 31, 89, 287
BspANI GGCC 2 cut(s) 142, 318
BspCNI CTCAG 1 cut(s) 19
BspFNI CGCG 5 cut(s) 56, 58, 87, 89, 98
BspLI GGNNCC 2 cut(s) 142, 143
BspPI GGATC 1 cut(s) 227
BsrBI CCGCTC 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 318
BssAI RCCGGY 1 cut(s) 318
BssECI CCNNGG 2 cut(s) 136, 137
BssHII GCGCGC 2 cut(s) 56, 96
BssMI GATC 1 cut(s) 219
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 1 cut(s) 69
BstC8I GCNNGC 4 cut(s) 58, 85, 98, 151
BstDEI CTNAG 1 cut(s) 6
BstFNI CGCG 5 cut(s) 56, 58, 87, 89, 98
BstHHI GCGC 6 cut(s) 58, 60, 89, 98, 100, 155
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 2 cut(s) 9, 71
BstMBI GATC 1 cut(s) 219
BstMWI GCNNNNNNNGC 3 cut(s) 93, 95, 155
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 144
BstUI CGCG 5 cut(s) 56, 58, 87, 89, 98
BstV1I GCAGC 2 cut(s) 119, 167
BsuRI GGCC 2 cut(s) 142, 318
Cac8I GCNNGC 4 cut(s) 58, 85, 98, 151
CfoI GCGC 6 cut(s) 58, 60, 89, 98, 100, 155
Cfr10I RCCGGY 1 cut(s) 318
Cfr13I GGNCC 3 cut(s) 140, 141, 316
Csp6I GTAC 1 cut(s) 295
CviAII CATG 1 cut(s) 326
CviJI RGCY 6 cut(s) 10, 121, 142, 158, 215, 318
CviKI_1 RGCY 6 cut(s) 10, 121, 142, 158, 215, 318
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 6
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
EciI GGCGGA 1 cut(s) 302
Eco24I GRGCYC 1 cut(s) 144
EcoO109I RGGNCCY 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 144
FaeI CATG 1 cut(s) 329
FaiI YATR 3 cut(s) 302, 304, 327
FalI AAGNNNNNCTT 4 cut(s) 189, 221, 251, 283
FaqI GGGAC 1 cut(s) 146
FatI CATG 1 cut(s) 325
Fnu4HI GCNGC 2 cut(s) 133, 156
FriOI GRGCYC 1 cut(s) 144
Fsp4HI GCNGC 2 cut(s) 133, 156
FspI TGCGCA 1 cut(s) 154
GlaI GCGC 6 cut(s) 57, 59, 88, 97, 99, 154
GluI GCNGC 2 cut(s) 133, 156
GsuI CTGGAG 1 cut(s) 122
HaeIII GGCC 2 cut(s) 142, 318
HapII CCGG 1 cut(s) 319
HhaI GCGC 6 cut(s) 58, 60, 89, 98, 100, 155
Hin1II CATG 1 cut(s) 329
Hin6I GCGC 6 cut(s) 56, 58, 87, 96, 98, 153
HinP1I GCGC 6 cut(s) 56, 58, 87, 96, 98, 153
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 2 cut(s) 113, 277
HpaII CCGG 1 cut(s) 319
HphI GGTGA 2 cut(s) 214, 245
Hpy188I TCNGA 2 cut(s) 118, 265
HpyAV CCTTC 3 cut(s) 41, 64, 86
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4V TGCA 1 cut(s) 325
HpyF10VI GCNNNNNNNGC 3 cut(s) 93, 95, 155
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 1 cut(s) 329
HspAI GCGC 6 cut(s) 56, 58, 87, 96, 98, 153
Kzo9I GATC 1 cut(s) 219
LmnI GCTCC 1 cut(s) 173
LpnPI CCDG 6 cut(s) 25, 86, 123, 150, 163, 178
Lsp1109I GCAGC 2 cut(s) 119, 167
LweI GCATC 1 cut(s) 5
MalI GATC 1 cut(s) 221
MbiI CCGCTC 1 cut(s) 31
MboI GATC 1 cut(s) 219
MboII GAAGA 4 cut(s) 50, 86, 122, 206
MhlI GDGCHC 1 cut(s) 144
MlyI GAGTC 1 cut(s) 286
MmeI TCCRAC 2 cut(s) 226, 243
MnlI CCTC 4 cut(s) 155, 168, 177, 283
MroXI GAANNNNTTC 1 cut(s) 201
MspA1I CMGCKG 1 cut(s) 158
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 5 cut(s) 56, 58, 87, 89, 98
MwoI GCNNNNNNNGC 3 cut(s) 93, 95, 155
NdeII GATC 1 cut(s) 219
NlaIII CATG 1 cut(s) 329
NlaIV GGNNCC 2 cut(s) 142, 143
NsbI TGCGCA 1 cut(s) 154
PasI CCCWGGG 1 cut(s) 137
PauI GCGCGC 2 cut(s) 56, 96
PdmI GAANNNNTTC 1 cut(s) 201
PfeI GAWTC 1 cut(s) 113
PkrI GCNGC 2 cut(s) 134, 157
PleI GAGTC 1 cut(s) 285
PpsI GAGTC 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 142, 143
PspOMI GGGCCC 1 cut(s) 140
PspPI GGNCC 3 cut(s) 140, 141, 316
PteI GCGCGC 2 cut(s) 56, 96
PvuII CAGCTG 1 cut(s) 158
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SatI GCNGC 2 cut(s) 133, 156
Sau3AI GATC 1 cut(s) 219
Sau96I GGNCC 3 cut(s) 140, 141, 316
SchI GAGTC 1 cut(s) 286
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 144
SetI ASST 3 cut(s) 123, 160, 217
SfaNI GCATC 1 cut(s) 5
SsiI CCGC 3 cut(s) 31, 89, 287
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 1 cut(s) 226
TatI WGTACW 1 cut(s) 294
TfiI GAWTC 1 cut(s) 113
TseI GCWGC 2 cut(s) 132, 155
TspDTI ATGAA 3 cut(s) 51, 60, 207
TspGWI ACGGA 1 cut(s) 115
XmnI GAANNNNTTC 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.