Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

18128197 .. 18129013

Gene Structure 817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1097600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGTTGACATGCCTAGTGGAAGGGGCGTCTCAGAAATTGGTGACAAAGCAATGACAATTTACAAGACAAGAACTATACCAAAAAATCAAGCTTTTAAGTTGCATCATGCTTGGAACATCCTCAAGGATTGTCCGAGGTGGGGAATCGATGCGAATCAACAATGTGGAAGATTATTTCATAATGAAGCCCCACCTCCAAATGATGTCAATGAAGGTGTGAATTTTGCCGACAATGAAGGTGTCAACCAAATGAGCCCAACTTCTTCTTTGCCAAGGCCTTCGGGTAGAGATAAGCAAAAGGAAGCAAAGAGAAAAGGGAAGTCCCAAGATCCGATACGTGAACAATTTGCTAGCGAAATGGCAAGAATGAACGAAAACCAGTGTCGTCGGCAGGAAGAATCGGCCCAAATGTTTTTGGCCATGAAGCAAGAAGGGGATAGGGAGCAAGAAAGGTACGAAACTAATTTGATAATGGCGGACCTCGACAAATACACTCTAGAGAGGAAGAGATACTTACGTGGTAAGCAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005829 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0007034 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0019898 GO:0031090 GO:0031312 GO:0031984 GO:0033036 GO:0033365 GO:0034613 GO:0042175 GO:0042406 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072665 GO:0072666 GO:0098827

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RINT1_TIP1

Protein Analysis

178

Amino Acids

20.49

Weight (kDa)

9.13

Isoelectric Point (pI)

48.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM-associated	PF14303	31 - 177	8.4e-12	No apical meristem-associated C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	476
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	417
AcsI	RAATTY	1 cut(s)	220
AcyI	GRCGYC	1 cut(s)	27
AfaI	GTAC	1 cut(s)	455
AfiI	CCNNNNNNNGG	1 cut(s)	140
AluBI	AGCT	1 cut(s)	92
AluI	AGCT	1 cut(s)	92
Alw26I	GTCTC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	323
AoxI	GGCC	3 cut(s)	275, 402, 417
ApoI	RAATTY	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	403, 478
AsuHPI	GGTGA	1 cut(s)	53
AsuNHI	GCTAGC	1 cut(s)	350
AvaII	GGWCC	1 cut(s)	478
BaeI	ACNNNNGTAYC	1 cut(s)	502
BalI	TGGCCA	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	257
BcoDI	GTCTC	1 cut(s)	34
BfaI	CTAG	3 cut(s)	15, 351, 497
Bme18I	GGWCC	1 cut(s)	478
BmgT120I	GGNCC	2 cut(s)	403, 478
BmsI	GCATC	2 cut(s)	112, 139
BmtI	GCTAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	107
Bsa29I	ATCGAT	1 cut(s)	147
BsaAI	YACGTR	2 cut(s)	338, 518
BsaBI	GATNNNNATC	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	27
BsaJI	CCNNGG	2 cut(s)	134, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	379
Bse3DI	GCAATG	1 cut(s)	57
Bse8I	GATNNNNATC	1 cut(s)	153
BseCI	ATCGAT	1 cut(s)	147
BseDI	CCNNGG	2 cut(s)	134, 272
BseGI	GGATG	1 cut(s)	117
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseMI	GCAATG	1 cut(s)	57
BseMII	CTCAG	1 cut(s)	45
BseNI	ACTGG	1 cut(s)	379
BshFI	GGCC	3 cut(s)	277, 404, 419
BshVI	ATCGAT	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	307
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	34
BsmBI	CGTCTC	1 cut(s)	34
BsmFI	GGGAC	1 cut(s)	307
BsnI	GGCC	3 cut(s)	277, 404, 419
Bsp1286I	GDGCHC	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	328
BspACI	CCGC	1 cut(s)	476
BspANI	GGCC	3 cut(s)	277, 404, 419
BspCNI	CTCAG	1 cut(s)	44
BspDI	ATCGAT	1 cut(s)	147
BspOI	GCTAGC	1 cut(s)	354
BspPI	GGATC	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	2 cut(s)	134, 272
BssMI	GATC	1 cut(s)	328
BssNI	GRCGYC	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	272
Bst6I	CTCTTC	1 cut(s)	500
BstACI	GRCGYC	1 cut(s)	27
BstBAI	YACGTR	2 cut(s)	338, 518
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	1 cut(s)	331
BstMAI	GTCTC	1 cut(s)	34
BstMBI	GATC	1 cut(s)	328
BstNSI	RCATGY	1 cut(s)	13
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
Bsu15I	ATCGAT	1 cut(s)	147
BsuRI	GGCC	3 cut(s)	277, 404, 419
BsuTUI	ATCGAT	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	117
BtsIMutI	CAGTG	1 cut(s)	386
Cac8I	GCNNGC	1 cut(s)	352
Cfr13I	GGNCC	2 cut(s)	403, 478
ClaI	ATCGAT	1 cut(s)	147
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	1 cut(s)	454
CviAII	CATG	3 cut(s)	10, 107, 421
CviJI	RGCY	6 cut(s)	92, 188, 255, 277, 404, 419
CviKI_1	RGCY	6 cut(s)	92, 188, 255, 277, 404, 419
CviQI	GTAC	1 cut(s)	454
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	1 cut(s)	330
DpnII	GATC	1 cut(s)	328
EaeI	YGGCCR	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	500
EarI	CTCTTC	1 cut(s)	500
EciI	GGCGGA	1 cut(s)	491
Eco130I	CCWWGG	1 cut(s)	272
Eco147I	AGGCCT	1 cut(s)	277
Eco24I	GRGCYC	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	478
EcoT14I	CCWWGG	1 cut(s)	272
EcoT38I	GRGCYC	1 cut(s)	257
ErhI	CCWWGG	1 cut(s)	272
Esp3I	CGTCTC	1 cut(s)	34
FaeI	CATG	3 cut(s)	13, 110, 424
FaiI	YATR	5 cut(s)	11, 77, 108, 180, 422
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FaqI	GGGAC	1 cut(s)	307
FatI	CATG	3 cut(s)	9, 106, 420
FokI	GGATG	1 cut(s)	104
FriOI	GRGCYC	1 cut(s)	257
FspBI	CTAG	3 cut(s)	15, 351, 497
HaeIII	GGCC	3 cut(s)	277, 404, 419
HgaI	GACGC	1 cut(s)	16
Hin1I	GRCGYC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	13, 110, 424
HincII	GTYRAC	2 cut(s)	7, 244
HindII	GTYRAC	2 cut(s)	7, 244
HindIII	AAGCTT	1 cut(s)	90
HinfI	GANTC	3 cut(s)	144, 154, 398
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	3 cut(s)	7, 244, 341
Hpy188I	TCNGA	3 cut(s)	34, 135, 333
Hpy188III	TCNNGA	1 cut(s)	497
Hpy8I	GTNNAC	3 cut(s)	7, 244, 341
Hpy99I	CGWCG	1 cut(s)	390
HpyAV	CCTTC	5 cut(s)	15, 206, 230, 288, 425
HpyCH4IV	ACGT	2 cut(s)	337, 517
HpyCH4V	TGCA	1 cut(s)	103
HpyF3I	CTNAG	1 cut(s)	31
HpySE526I	ACGT	2 cut(s)	337, 517
Hsp92I	GRCGYC	1 cut(s)	27
Hsp92II	CATG	3 cut(s)	13, 110, 424
Kzo9I	GATC	1 cut(s)	328
LmnI	GCTCC	1 cut(s)	442
LpnPI	CCDG	2 cut(s)	377, 392
LweI	GCATC	2 cut(s)	112, 139
MaeI	CTAG	3 cut(s)	15, 351, 497
MaeII	ACGT	2 cut(s)	337, 517
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	1 cut(s)	330
MboI	GATC	1 cut(s)	328
MboII	GAAGA	4 cut(s)	180, 255, 407, 517
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	1 cut(s)	257
MlsI	TGGCCA	1 cut(s)	419
MluCI	AATT	5 cut(s)	36, 57, 220, 344, 463
MluNI	TGGCCA	1 cut(s)	419
MnlI	CCTC	5 cut(s)	129, 131, 204, 491, 495
Mox20I	TGGCCA	1 cut(s)	419
MscI	TGGCCA	1 cut(s)	419
MseI	TTAA	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	419
NdeII	GATC	1 cut(s)	328
NheI	GCTAGC	1 cut(s)	350
NlaIII	CATG	3 cut(s)	13, 110, 424
NmuCI	GTSAC	1 cut(s)	41
NspI	RCATGY	1 cut(s)	13
PceI	AGGCCT	1 cut(s)	277
PfeI	GAWTC	3 cut(s)	144, 154, 398
Ppu21I	YACGTR	2 cut(s)	338, 518
PspPI	GGNCC	2 cut(s)	403, 478
PsuI	RGATCY	1 cut(s)	328
RsaI	GTAC	1 cut(s)	455
RsaNI	GTAC	1 cut(s)	454
SaqAI	TTAA	1 cut(s)	96
Sau3AI	GATC	1 cut(s)	328
Sau96I	GGNCC	2 cut(s)	403, 478
SduI	GDGCHC	1 cut(s)	257
SetI	ASST	9 cut(s)	94, 140, 196, 217, 241, 340, 455, 483, 520
SfaNI	GCATC	2 cut(s)	112, 139
SinI	GGWCC	1 cut(s)	478
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	5 cut(s)	36, 57, 220, 344, 463
SseBI	AGGCCT	1 cut(s)	277
SsiI	CCGC	1 cut(s)	476
SspMI	CTAG	3 cut(s)	15, 351, 497
StuI	AGGCCT	1 cut(s)	277
StyI	CCWWGG	1 cut(s)	272
TaiI	ACGT	2 cut(s)	340, 520
TaqI	TCGA	2 cut(s)	147, 483
TasI	AATT	5 cut(s)	36, 57, 220, 344, 463
TfiI	GAWTC	3 cut(s)	144, 154, 398
Tru1I	TTAA	1 cut(s)	96
Tru9I	TTAA	1 cut(s)	96
TscAI	CASTG	1 cut(s)	386
TseFI	GTSAC	1 cut(s)	41
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	6 cut(s)	167, 198, 225, 249, 383, 437
TspRI	CASTG	1 cut(s)	386
VpaK11BI	GGWCC	1 cut(s)	478
XapI	RAATTY	1 cut(s)	220
XbaI	TCTAGA	1 cut(s)	496
XceI	RCATGY	1 cut(s)	13
XspI	CTAG	3 cut(s)	15, 351, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.