Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000623.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Reverse (-)

18139 .. 18603

Gene Structure 465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000623.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

atggaaaacacccactttagtgttcctaatcatgtcaacttggatgacaatggaacacccactactgaggatgagcttccctcatcaaaaaattcacgtcctcaaggacagaaagctcagaagctagctaagaaaaaaggcaataagcaggatgaggatggcctaagagtgcaaatgcagaaatgttgtgaacaaacagaacgcgagtgccaacaaaggcaaagacagtttgaggaaggtcaactaattgagcaacgcgctaaggatgctcgcacgatgcaggtggatccatcaattttcaccccaagaaagaggagttattgggagaggaagcaacaacaaataattgataaggaggcagaaacttcaagcatcccggaacaatctcaagatcctacaccccctgaaggagacaacacaggcttgaccacttatgatccacttggcgagacatcttggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

154

Amino Acids

17.75

Weight (kDa)

5.18

Isoelectric Point (pI)

56.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	271
Acc36I	ACCTGC	1 cut(s)	271
AccII	CGCG	2 cut(s)	204, 258
AclWI	GGATC	4 cut(s)	281, 294, 386, 431
AcsI	RAATTY	1 cut(s)	91
AcuI	CTGAAG	1 cut(s)	426
AfiI	CCNNNNNNNGG	1 cut(s)	407
AgsI	TTSAA	1 cut(s)	369
AjiI	CACGTC	1 cut(s)	98
AleI	CACNNNNGTG	1 cut(s)	18
AluBI	AGCT	4 cut(s)	76, 116, 124, 128
AluI	AGCT	4 cut(s)	76, 116, 124, 128
Alw26I	GTCTC	2 cut(s)	405, 443
AlwI	GGATC	4 cut(s)	281, 294, 386, 431
AoxI	GGCC	1 cut(s)	160
ApoI	RAATTY	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	260
AsuC2I	CCSGG	1 cut(s)	377
AsuHPI	GGTGA	1 cut(s)	292
AsuNHI	GCTAGC	1 cut(s)	124
BamHI	GGATCC	1 cut(s)	286
BccI	CCATC	2 cut(s)	152, 298
BcnI	CCSGG	1 cut(s)	377
BcoDI	GTCTC	2 cut(s)	405, 443
BfaI	CTAG	1 cut(s)	125
BfuAI	ACCTGC	1 cut(s)	271
Bme1390I	CCNGG	1 cut(s)	377
BmgBI	CACGTC	1 cut(s)	98
BmiI	GGNNCC	1 cut(s)	288
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	3 cut(s)	256, 267, 381
BmtI	GCTAGC	1 cut(s)	128
BplI	GAGNNNNNCTC	2 cut(s)	65, 97
Bpu10I	CCTNAGC	1 cut(s)	261
BpuEI	CTTGAG	2 cut(s)	87, 372
BpuMI	CCSGG	1 cut(s)	377
Bsc4I	CCNNNNNNNGG	1 cut(s)	407
BseGI	GGATG	7 cut(s)	49, 76, 157, 163, 271, 372, 465
BseLI	CCNNNNNNNGG	1 cut(s)	407
BseMII	CTCAG	2 cut(s)	57, 131
BseRI	GAGGAG	1 cut(s)	328
Bsh1236I	CGCG	2 cut(s)	204, 258
BshFI	GGCC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	377
BslI	CCNNNNNNNGG	1 cut(s)	407
BsmAI	GTCTC	2 cut(s)	405, 443
BsnI	GGCC	1 cut(s)	162
Bsp143I	GATC	3 cut(s)	286, 391, 436
BspANI	GGCC	1 cut(s)	162
BspCNI	CTCAG	2 cut(s)	58, 130
BspFNI	CGCG	2 cut(s)	204, 258
BspLI	GGNNCC	1 cut(s)	288
BspMI	ACCTGC	1 cut(s)	271
BspOI	GCTAGC	1 cut(s)	128
BspPI	GGATC	4 cut(s)	281, 294, 386, 431
BssMI	GATC	3 cut(s)	286, 391, 436
Bst4CI	ACNGT	1 cut(s)	228
BstC8I	GCNNGC	2 cut(s)	126, 271
BstDEI	CTNAG	5 cut(s)	66, 117, 129, 164, 261
BstF5I	GGATG	7 cut(s)	49, 76, 157, 163, 271, 372, 465
BstFNI	CGCG	2 cut(s)	204, 258
BstHHI	GCGC	1 cut(s)	260
BstKTI	GATC	3 cut(s)	289, 394, 439
BstMAI	GTCTC	2 cut(s)	405, 443
BstMBI	GATC	3 cut(s)	286, 391, 436
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstSCI	CCNGG	1 cut(s)	375
BstUI	CGCG	2 cut(s)	204, 258
BstX2I	RGATCY	2 cut(s)	286, 391
BstYI	RGATCY	2 cut(s)	286, 391
BsuRI	GGCC	1 cut(s)	162
BtrI	CACGTC	1 cut(s)	98
BtsCI	GGATG	7 cut(s)	49, 76, 157, 163, 271, 372, 465
BveI	ACCTGC	1 cut(s)	271
Cac8I	GCNNGC	2 cut(s)	126, 271
CfoI	GCGC	1 cut(s)	260
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	6 cut(s)	76, 116, 124, 128, 162, 423
CviKI_1	RGCY	6 cut(s)	76, 116, 124, 128, 162, 423
DdeI	CTNAG	5 cut(s)	66, 117, 129, 164, 261
DpnI	GATC	3 cut(s)	288, 393, 438
DpnII	GATC	3 cut(s)	286, 391, 436
Eco57I	CTGAAG	1 cut(s)	426
FaeI	CATG	1 cut(s)	35
FaiI	YATR	2 cut(s)	33, 435
FatI	CATG	1 cut(s)	31
FokI	GGATG	6 cut(s)	56, 83, 164, 170, 278, 359
FspBI	CTAG	1 cut(s)	125
GlaI	GCGC	1 cut(s)	259
HaeIII	GGCC	1 cut(s)	162
HapII	CCGG	1 cut(s)	377
HhaI	GCGC	1 cut(s)	260
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	258
HinP1I	GCGC	1 cut(s)	258
HincII	GTYRAC	2 cut(s)	37, 242
HindII	GTYRAC	2 cut(s)	37, 242
HpaII	CCGG	1 cut(s)	377
HphI	GGTGA	1 cut(s)	292
Hpy166II	GTNNAC	3 cut(s)	37, 191, 242
Hpy188I	TCNGA	1 cut(s)	120
Hpy188III	TCNNGA	1 cut(s)	389
Hpy8I	GTNNAC	3 cut(s)	37, 191, 242
HpyAV	CCTTC	2 cut(s)	230, 401
HpyCH4III	ACNGT	1 cut(s)	228
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	3 cut(s)	172, 178, 280
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	5 cut(s)	66, 117, 129, 164, 261
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	1 cut(s)	258
Kzo9I	GATC	3 cut(s)	286, 391, 436
LpnPI	CCDG	5 cut(s)	134, 266, 390, 405, 417
LweI	GCATC	3 cut(s)	256, 267, 381
MaeI	CTAG	1 cut(s)	125
MaeII	ACGT	1 cut(s)	97
MalI	GATC	3 cut(s)	288, 393, 438
MboI	GATC	3 cut(s)	286, 391, 436
MflI	RGATCY	2 cut(s)	286, 391
MluCI	AATT	4 cut(s)	91, 246, 294, 345
MnlI	CCTC	8 cut(s)	61, 91, 111, 148, 226, 306, 321, 349
MslI	CAYNNNNRTG	1 cut(s)	18
MspI	CCGG	1 cut(s)	377
MspR9I	CCNGG	1 cut(s)	377
MvnI	CGCG	2 cut(s)	204, 258
MwoI	GCNNNNNNNGC	1 cut(s)	266
NciI	CCSGG	1 cut(s)	377
NdeII	GATC	3 cut(s)	286, 391, 436
NheI	GCTAGC	1 cut(s)	124
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	288
OliI	CACNNNNGTG	1 cut(s)	18
PaqCI	CACCTGC	1 cut(s)	271
PfoI	TCCNGGA	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	288
PsrI	GAACNNNNNNTAC	2 cut(s)	46, 78
PsuI	RGATCY	2 cut(s)	286, 391
RseI	CAYNNNNRTG	1 cut(s)	18
Sau3AI	GATC	3 cut(s)	286, 391, 436
ScrFI	CCNGG	1 cut(s)	377
SetI	ASST	7 cut(s)	78, 100, 118, 126, 130, 241, 285
SfaNI	GCATC	3 cut(s)	256, 267, 381
SmiMI	CAYNNNNRTG	1 cut(s)	18
SmlI	CTYRAG	2 cut(s)	102, 387
SmoI	CTYRAG	2 cut(s)	102, 387
Sse9I	AATT	4 cut(s)	91, 246, 294, 345
SspMI	CTAG	1 cut(s)	125
StyD4I	CCNGG	1 cut(s)	375
TaaI	ACNGT	1 cut(s)	228
TaiI	ACGT	1 cut(s)	100
TasI	AATT	4 cut(s)	91, 246, 294, 345
XapI	RAATTY	1 cut(s)	91
XspI	CTAG	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.