Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

26187400 .. 26188347

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g33100.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGGAAAAAGAAAGGAATCATGGAGGCACCCCGAAGATGTTGTTCTTGGTCATATTTGGATCACTGTTGGTGGTGACGGTGCCGTTGGAAAGGACCAAACGTTCGACCTATTGTGGGATCGTATTTCGCAAGAGTACAATGCCACCAAACCGGTGGAGTGCACAACTAGAACCTCTTCTAGTTGTCTTTCTCGTTGGAAGAAAATAAGCGCATCATGTATGAAGTGGCGTCAATCTCTCAACAAGGCCGAAGCTTGTCACCGAAGAGGCGAAAATCAACTTGACGAGATTCAGATTCTGGCAGTTCTTCAGGGAGTGACTCAGATGATGATAACGCACAGTCGTAGTTGTGCATTGCAATTGCAGCCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

124

Amino Acids

14.0

Weight (kDa)

8.93

Isoelectric Point (pI)

86.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	27, 80
AclI	AACGTT	1 cut(s)	101
AclWI	GGATC	2 cut(s)	68, 126
AcuI	CTGAAG	1 cut(s)	293
AcyI	GRCGYC	1 cut(s)	229
AfaI	GTAC	1 cut(s)	137
AfiI	CCNNNNNNNGG	1 cut(s)	115
AgeI	ACCGGT	1 cut(s)	151
AloI	GAACNNNNNNTCC	2 cut(s)	86, 118
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
Alw21I	GWGCWC	1 cut(s)	164
Alw44I	GTGCAC	1 cut(s)	160
AlwI	GGATC	2 cut(s)	68, 126
AlwNI	CAGNNNCTG	1 cut(s)	298
AoxI	GGCC	1 cut(s)	246
ApaLI	GTGCAC	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	364
ArsI	GACNNNNNNTTYG	2 cut(s)	86, 118
AsiGI	ACCGGT	1 cut(s)	151
Asp700I	GAANNNNTTC	1 cut(s)	175
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	86, 251
AvaII	GGWCC	1 cut(s)	94
BaeGI	GKGCMC	1 cut(s)	164
BanI	GGYRCC	2 cut(s)	27, 80
Bbv12I	GWGCWC	1 cut(s)	164
BceAI	ACGGC	2 cut(s)	68, 352
BfaI	CTAG	2 cut(s)	168, 180
BisI	GCNGC	1 cut(s)	365
BlsI	GCNGC	1 cut(s)	366
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	2 cut(s)	29, 82
BmsI	GCATC	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	229
BsaWI	WCCGGW	1 cut(s)	151
Bsc4I	CCNNNNNNNGG	1 cut(s)	115
Bse118I	RCCGGY	1 cut(s)	151
Bse3DI	GCAATG	1 cut(s)	353
BseLI	CCNNNNNNNGG	1 cut(s)	115
BseMI	GCAATG	1 cut(s)	353
BseMII	CTCAG	1 cut(s)	335
BseSI	GKGCMC	1 cut(s)	164
BshFI	GGCC	1 cut(s)	248
BshNI	GGYRCC	2 cut(s)	27, 80
BshTI	ACCGGT	1 cut(s)	151
BsiHKAI	GWGCWC	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	115
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp143I	GATC	2 cut(s)	60, 118
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	1 cut(s)	334
BspLI	GGNNCC	2 cut(s)	29, 82
BspPI	GGATC	2 cut(s)	68, 126
BspT107I	GGYRCC	2 cut(s)	27, 80
BsrDI	GCAATG	1 cut(s)	353
BsrFI	RCCGGY	1 cut(s)	151
BssAI	RCCGGY	1 cut(s)	151
BssMI	GATC	2 cut(s)	60, 118
BssNI	GRCGYC	1 cut(s)	229
Bst4CI	ACNGT	3 cut(s)	67, 80, 341
Bst6I	CTCTTC	2 cut(s)	181, 259
BstACI	GRCGYC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	2 cut(s)	63, 121
BstMBI	GATC	2 cut(s)	60, 118
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstSLI	GKGCMC	1 cut(s)	164
BstXI	CCANNNNNNTGG	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	248
BtsIMutI	CAGTG	1 cut(s)	63
CaiI	CAGNNNCTG	1 cut(s)	298
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	94
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	1 cut(s)	136
CspAI	ACCGGT	1 cut(s)	151
CviAII	CATG	2 cut(s)	21, 216
CviJI	RGCY	3 cut(s)	248, 254, 367
CviKI_1	RGCY	3 cut(s)	248, 254, 367
CviQI	GTAC	1 cut(s)	136
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	2 cut(s)	62, 120
DpnII	GATC	2 cut(s)	60, 118
Eam1104I	CTCTTC	2 cut(s)	181, 259
EarI	CTCTTC	2 cut(s)	181, 259
Eco47I	GGWCC	1 cut(s)	94
Eco57I	CTGAAG	1 cut(s)	293
FaeI	CATG	2 cut(s)	24, 219
FaiI	YATR	4 cut(s)	22, 54, 217, 221
FatI	CATG	2 cut(s)	20, 215
Fnu4HI	GCNGC	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	365
FspBI	CTAG	2 cut(s)	168, 180
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	365
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	1 cut(s)	218
HhaI	GCGC	1 cut(s)	212
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	2 cut(s)	24, 219
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	4 cut(s)	17, 289, 295, 319
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	2 cut(s)	86, 251
Hpy166II	GTNNAC	1 cut(s)	162
Hpy188I	TCNGA	2 cut(s)	294, 324
Hpy8I	GTNNAC	1 cut(s)	162
HpyCH4III	ACNGT	3 cut(s)	67, 80, 341
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	4 cut(s)	162, 353, 358, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	101
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	2 cut(s)	24, 219
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	60, 118
LpnPI	CCDG	3 cut(s)	165, 284, 296
LweI	GCATC	1 cut(s)	221
MaeI	CTAG	2 cut(s)	168, 180
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	3 cut(s)	74, 257, 316
MalI	GATC	2 cut(s)	62, 120
MboI	GATC	2 cut(s)	60, 118
MboII	GAAGA	5 cut(s)	47, 168, 211, 276, 299
MfeI	CAATTG	1 cut(s)	359
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	1 cut(s)	359
MlyI	GAGTC	1 cut(s)	313
MmeI	TCCRAC	2 cut(s)	67, 176
MnlI	CCTC	3 cut(s)	18, 184, 260
MroXI	GAANNNNTTC	1 cut(s)	175
MspI	CCGG	1 cut(s)	152
MunI	CAATTG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	364
NdeII	GATC	2 cut(s)	60, 118
NlaIII	CATG	2 cut(s)	24, 219
NlaIV	GGNNCC	2 cut(s)	29, 82
NmuCI	GTSAC	3 cut(s)	74, 257, 316
PdmI	GAANNNNTTC	1 cut(s)	175
PfeI	GAWTC	3 cut(s)	17, 289, 295
PinAI	ACCGGT	1 cut(s)	151
PkrI	GCNGC	1 cut(s)	366
PleI	GAGTC	1 cut(s)	313
PpsI	GAGTC	1 cut(s)	313
Psp1406I	AACGTT	1 cut(s)	101
PspN4I	GGNNCC	2 cut(s)	29, 82
PspPI	GGNCC	1 cut(s)	94
PstNI	CAGNNNCTG	1 cut(s)	298
RsaI	GTAC	1 cut(s)	137
RsaNI	GTAC	1 cut(s)	136
SatI	GCNGC	1 cut(s)	365
Sau3AI	GATC	2 cut(s)	60, 118
Sau96I	GGNCC	1 cut(s)	94
SchI	GAGTC	1 cut(s)	313
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	4 cut(s)	104, 111, 176, 256
SfaNI	GCATC	1 cut(s)	221
SinI	GGWCC	1 cut(s)	94
Sse9I	AATT	1 cut(s)	359
SspMI	CTAG	2 cut(s)	168, 180
TaaI	ACNGT	3 cut(s)	67, 80, 341
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	1 cut(s)	105
TasI	AATT	1 cut(s)	359
TatI	WGTACW	1 cut(s)	135
TfiI	GAWTC	3 cut(s)	17, 289, 295
TscAI	CASTG	1 cut(s)	70
TseFI	GTSAC	3 cut(s)	74, 257, 316
TseI	GCWGC	1 cut(s)	364
Tsp45I	GTSAC	3 cut(s)	74, 257, 316
TspDTI	ATGAA	1 cut(s)	236
TspRI	CASTG	1 cut(s)	70
VneI	GTGCAC	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	151
XmnI	GAANNNNTTC	1 cut(s)	175
XspI	CTAG	2 cut(s)	168, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.