Rmu_sc0009945.1_g000003

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009945.1
OG0000386
Physical Location & Seq
Reverse (-)
3060 .. 3377
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009945.1_g000003.1.cds

Sequence Viewer

Length: 318 bp
atggctccaagaggggattcttggaggcacaatgaagaagttattctttgccaagcttggatcaccgttgggggtgatggttgcatcggaaaagatcaaaagtcggatttattgtggagtcgtgtggcggaggagtacaatgctcacaaaccggccggttgcatggagagaacacattctagttgccacgctcgttggaagagaataagttcagcatgtatgaagtggcgccaagctattaacaaggtcgaacactttcaacgaagaagaggcgaaaatatggaggacgagctaattatattgaaatatgttcaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.27

Weight (kDa)

8.68

Isoelectric Point (pI)

73.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000386)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata RLG00000003630 RLG00000016594
rosa_multiflora Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa Rorug04G0175800
rosa_wichuraiana Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 228
AciI CCGC 1 cut(s) 128
AclWI GGATC 1 cut(s) 68
AcoI YGGCCR 1 cut(s) 153
AcyI GRCGYC 1 cut(s) 229
AfaI GTAC 1 cut(s) 137
AgsI TTSAA 3 cut(s) 260, 304, 314
AjuI GAANNNNNNNTTGG 1 cut(s) 33
AluBI AGCT 3 cut(s) 56, 236, 292
AluI AGCT 3 cut(s) 56, 236, 292
AlwI GGATC 1 cut(s) 68
AoxI GGCC 1 cut(s) 153
Asp700I GAANNNNTTC 4 cut(s) 42, 175, 208, 255
AspLEI GCGC 1 cut(s) 231
AsuHPI GGTGA 2 cut(s) 55, 86
BanI GGYRCC 1 cut(s) 228
BccI CCATC 1 cut(s) 71
BfaI CTAG 1 cut(s) 180
BfoI RGCGCY 1 cut(s) 232
BmiI GGNNCC 2 cut(s) 6, 230
BmsI GCATC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 229
Bse118I RCCGGY 2 cut(s) 151, 155
BseRI GAGGAG 1 cut(s) 146
BseX3I CGGCCG 1 cut(s) 153
Bsh1285I CGRYCG 1 cut(s) 156
BshFI GGCC 1 cut(s) 155
BshNI GGYRCC 1 cut(s) 228
BsiEI CGRYCG 1 cut(s) 156
BsiSI CCGG 2 cut(s) 152, 156
BsnI GGCC 1 cut(s) 155
Bsp143I GATC 2 cut(s) 60, 94
BspACI CCGC 1 cut(s) 128
BspANI GGCC 1 cut(s) 155
BspLI GGNNCC 2 cut(s) 6, 230
BspPI GGATC 1 cut(s) 68
BspT107I GGYRCC 1 cut(s) 228
BsrFI RCCGGY 2 cut(s) 151, 155
BssAI RCCGGY 2 cut(s) 151, 155
BssMI GATC 2 cut(s) 60, 94
BssNI GRCGYC 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 67
Bst6I CTCTTC 2 cut(s) 194, 262
BstACI GRCGYC 1 cut(s) 229
BstH2I RGCGCY 1 cut(s) 232
BstHHI GCGC 1 cut(s) 231
BstKTI GATC 2 cut(s) 63, 97
BstMBI GATC 2 cut(s) 60, 94
BstMCI CGRYCG 1 cut(s) 156
BstNSI RCATGY 1 cut(s) 219
BstZI CGGCCG 1 cut(s) 153
BsuRI GGCC 1 cut(s) 155
CfoI GCGC 1 cut(s) 231
Cfr10I RCCGGY 2 cut(s) 151, 155
Csp6I GTAC 1 cut(s) 136
CspCI CAANNNNNGTGG 2 cut(s) 176, 211
CviAII CATG 2 cut(s) 163, 216
CviJI RGCY 5 cut(s) 5, 56, 155, 236, 292
CviKI_1 RGCY 5 cut(s) 5, 56, 155, 236, 292
CviQI GTAC 1 cut(s) 136
DinI GGCGCC 1 cut(s) 230
DpnI GATC 2 cut(s) 62, 96
DpnII GATC 2 cut(s) 60, 94
EaeI YGGCCR 1 cut(s) 153
EagI CGGCCG 1 cut(s) 153
Eam1104I CTCTTC 2 cut(s) 194, 262
EarI CTCTTC 2 cut(s) 194, 262
EciI GGCGGA 1 cut(s) 143
EclXI CGGCCG 1 cut(s) 153
Eco52I CGGCCG 1 cut(s) 153
EgeI GGCGCC 1 cut(s) 230
EheI GGCGCC 1 cut(s) 230
FaeI CATG 2 cut(s) 166, 219
FaiI YATR 6 cut(s) 164, 217, 221, 281, 299, 309
FalI AAGNNNNNCTT 2 cut(s) 30, 62
FatI CATG 2 cut(s) 162, 215
FspBI CTAG 1 cut(s) 180
GlaI GCGC 1 cut(s) 230
HaeII RGCGCY 1 cut(s) 232
HaeIII GGCC 1 cut(s) 155
HapII CCGG 2 cut(s) 152, 156
HhaI GCGC 1 cut(s) 231
Hin1I GRCGYC 1 cut(s) 229
Hin1II CATG 2 cut(s) 166, 219
Hin6I GCGC 1 cut(s) 229
HinP1I GCGC 1 cut(s) 229
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 2 cut(s) 17, 118
HpaII CCGG 2 cut(s) 152, 156
HphI GGTGA 2 cut(s) 55, 86
Hpy188I TCNGA 2 cut(s) 89, 106
HpyCH4III ACNGT 1 cut(s) 67
HpyCH4V TGCA 2 cut(s) 84, 162
Hsp92I GRCGYC 1 cut(s) 229
Hsp92II CATG 2 cut(s) 166, 219
HspAI GCGC 1 cut(s) 229
KasI GGCGCC 1 cut(s) 228
Kzo9I GATC 2 cut(s) 60, 94
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 2 cut(s) 165, 169
LweI GCATC 1 cut(s) 93
MaeI CTAG 1 cut(s) 180
MalI GATC 2 cut(s) 62, 96
MboI GATC 2 cut(s) 60, 94
MboII GAAGA 4 cut(s) 47, 211, 276, 279
MluCI AATT 1 cut(s) 294
Mly113I GGCGCC 1 cut(s) 229
MlyI GAGTC 1 cut(s) 127
MmeI TCCRAC 2 cut(s) 84, 176
MnlI CCTC 5 cut(s) 5, 18, 124, 263, 277
MroXI GAANNNNTTC 4 cut(s) 42, 175, 208, 255
MseI TTAA 1 cut(s) 240
MspI CCGG 2 cut(s) 152, 156
NarI GGCGCC 1 cut(s) 229
NdeII GATC 2 cut(s) 60, 94
NlaIII CATG 2 cut(s) 166, 219
NlaIV GGNNCC 2 cut(s) 6, 230
NspI RCATGY 1 cut(s) 219
PdmI GAANNNNTTC 4 cut(s) 42, 175, 208, 255
PfeI GAWTC 1 cut(s) 17
PleI GAGTC 1 cut(s) 126
PluTI GGCGCC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 6, 230
RsaI GTAC 1 cut(s) 137
RsaNI GTAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 2 cut(s) 60, 94
SchI GAGTC 1 cut(s) 127
SetI ASST 4 cut(s) 58, 238, 249, 294
SfaNI GCATC 1 cut(s) 93
SfoI GGCGCC 1 cut(s) 230
Sse9I AATT 1 cut(s) 294
SsiI CCGC 1 cut(s) 128
SspDI GGCGCC 1 cut(s) 228
SspMI CTAG 1 cut(s) 180
TaaI ACNGT 1 cut(s) 67
TaqI TCGA 1 cut(s) 249
TasI AATT 1 cut(s) 294
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 1 cut(s) 17
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TspDTI ATGAA 2 cut(s) 48, 236
XceI RCATGY 1 cut(s) 219
XmnI GAANNNNTTC 4 cut(s) 42, 175, 208, 255
XspI CTAG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.