Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001977.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

71610 .. 72620

Gene Structure 1011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001977.1_g000020.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

atggctccaagaggggattcttggaggcacaatgaagaagttattctttgccaagcttggatcaccgttgggggggatggttgcgtcggaaaagatcaaaagtcggacttattgtggagtcgtgtggcggaggagtacaatgctcacaaaccggccggttggatggatagaacacattctagttgccacgctcgttggaagaaaataagtccggcatgtatgaagtgccgccaagctcttaacaaggtcgaacactttcaacgaagaagcggcgaaaatatggaggacgagctcatgaatgttaaatcaacgtactatgactcggaaggttgtgattttgtgtttgagcattgttggcaatacttgaaaaatacagaaaagtttggaaaaacgccatcaattgaaaacacccactttagtgttcctaatcatgtcaacttggatgacgatggaacacccactactaaggatgagcttccctcatcaagaaaggcatgtcctcaaggacagaaagctcataagctagctaagaaaaaagacaataagcaggatgcggatggcctacgagttcaaatgcagaaatgttatgaacaaacagaacgcgagcaccaacaaaggcaaagacagtttgaggaaggtcaactaattgagcaacgcgctgacgttgctcgcacgatgcaggtggatccatcaattttcaccccaagaaagaggagttattgggagaggaagcaacaacaaataattgataaggaggcagaaacttcaagcatcccagaacaatctcaagatcctacaccccctaaaggagacaacacatgcttgaccacttatgatccacttggaaagacatattggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

287

Amino Acids

33.34

Weight (kDa)

6.8

Isoelectric Point (pI)

60.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	670
Acc36I	ACCTGC	1 cut(s)	670
AccII	CGCG	2 cut(s)	603, 657
AciI	CCGC	4 cut(s)	128, 229, 270, 554
AclWI	GGATC	5 cut(s)	68, 680, 693, 785, 830
AcoI	YGGCCR	1 cut(s)	153
AfaI	GTAC	2 cut(s)	137, 314
AfiI	CCNNNNNNNGG	2 cut(s)	72, 806
AgsI	TTSAA	5 cut(s)	260, 367, 404, 572, 768
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 838
AleI	CACNNNNGTG	1 cut(s)	417
AluBI	AGCT	7 cut(s)	56, 236, 292, 475, 515, 523, 527
AluI	AGCT	7 cut(s)	56, 236, 292, 475, 515, 523, 527
Alw21I	GWGCWC	2 cut(s)	294, 609
Alw26I	GTCTC	1 cut(s)	804
AlwI	GGATC	5 cut(s)	68, 680, 693, 785, 830
AoxI	GGCC	2 cut(s)	153, 559
Asp700I	GAANNNNTTC	3 cut(s)	42, 175, 255
AspLEI	GCGC	1 cut(s)	659
AsuHPI	GGTGA	2 cut(s)	55, 691
AsuNHI	GCTAGC	1 cut(s)	523
BamHI	GGATCC	1 cut(s)	685
BanII	GRGCYC	1 cut(s)	294
Bbv12I	GWGCWC	2 cut(s)	294, 609
BccI	CCATC	6 cut(s)	71, 157, 403, 443, 551, 697
BcoDI	GTCTC	1 cut(s)	804
BfaI	CTAG	2 cut(s)	180, 524
BfuAI	ACCTGC	1 cut(s)	670
BisI	GCNGC	2 cut(s)	229, 271
BlsI	GCNGC	2 cut(s)	230, 272
BmiI	GGNNCC	2 cut(s)	6, 687
BmsI	GCATC	3 cut(s)	541, 666, 780
BmtI	GCTAGC	1 cut(s)	527
BplI	GAGNNNNNCTC	2 cut(s)	464, 496
BpuEI	CTTGAG	2 cut(s)	486, 771
Bsc4I	CCNNNNNNNGG	2 cut(s)	72, 806
Bse118I	RCCGGY	2 cut(s)	151, 155
BseGI	GGATG	8 cut(s)	82, 168, 448, 475, 556, 562, 771, 864
BseLI	CCNNNNNNNGG	2 cut(s)	72, 806
BseRI	GAGGAG	2 cut(s)	146, 727
BseX3I	CGGCCG	1 cut(s)	153
Bsh1236I	CGCG	2 cut(s)	603, 657
Bsh1285I	CGRYCG	1 cut(s)	156
BshFI	GGCC	2 cut(s)	155, 561
BsiEI	CGRYCG	1 cut(s)	156
BsiHKAI	GWGCWC	2 cut(s)	294, 609
BsiSI	CCGG	3 cut(s)	152, 156, 212
BslI	CCNNNNNNNGG	2 cut(s)	72, 806
BsmAI	GTCTC	1 cut(s)	804
BsnI	GGCC	2 cut(s)	155, 561
Bsp1286I	GDGCHC	2 cut(s)	294, 609
Bsp143I	GATC	5 cut(s)	60, 94, 685, 790, 835
BspACI	CCGC	4 cut(s)	128, 229, 270, 554
BspANI	GGCC	2 cut(s)	155, 561
BspFNI	CGCG	2 cut(s)	603, 657
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	2 cut(s)	6, 687
BspMI	ACCTGC	1 cut(s)	670
BspOI	GCTAGC	1 cut(s)	527
BspPI	GGATC	5 cut(s)	68, 680, 693, 785, 830
BsrFI	RCCGGY	2 cut(s)	151, 155
BssAI	RCCGGY	2 cut(s)	151, 155
BssMI	GATC	5 cut(s)	60, 94, 685, 790, 835
Bst4CI	ACNGT	2 cut(s)	67, 627
BstC8I	GCNNGC	3 cut(s)	525, 605, 670
BstDEI	CTNAG	2 cut(s)	465, 528
BstF5I	GGATG	8 cut(s)	82, 168, 448, 475, 556, 562, 771, 864
BstFNI	CGCG	2 cut(s)	603, 657
BstHHI	GCGC	1 cut(s)	659
BstKTI	GATC	5 cut(s)	63, 97, 688, 793, 838
BstMAI	GTCTC	1 cut(s)	804
BstMBI	GATC	5 cut(s)	60, 94, 685, 790, 835
BstMCI	CGRYCG	1 cut(s)	156
BstMWI	GCNNNNNNNGC	2 cut(s)	355, 665
BstNSI	RCATGY	3 cut(s)	219, 498, 822
BstUI	CGCG	2 cut(s)	603, 657
BstX2I	RGATCY	2 cut(s)	685, 790
BstYI	RGATCY	2 cut(s)	685, 790
BstZI	CGGCCG	1 cut(s)	153
BsuRI	GGCC	2 cut(s)	155, 561
BtsCI	GGATG	8 cut(s)	82, 168, 448, 475, 556, 562, 771, 864
BveI	ACCTGC	1 cut(s)	670
Cac8I	GCNNGC	3 cut(s)	525, 605, 670
CciI	TCATGA	1 cut(s)	294
CfoI	GCGC	1 cut(s)	659
Cfr10I	RCCGGY	2 cut(s)	151, 155
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	2 cut(s)	136, 313
CspCI	CAANNNNNGTGG	2 cut(s)	176, 211
CviAII	CATG	5 cut(s)	216, 295, 431, 495, 819
CviQI	GTAC	2 cut(s)	136, 313
DdeI	CTNAG	2 cut(s)	465, 528
DpnI	GATC	5 cut(s)	62, 96, 687, 792, 837
DpnII	GATC	5 cut(s)	60, 94, 685, 790, 835
EaeI	YGGCCR	1 cut(s)	153
EagI	CGGCCG	1 cut(s)	153
EciI	GGCGGA	1 cut(s)	143
Ecl136II	GAGCTC	1 cut(s)	292
EclXI	CGGCCG	1 cut(s)	153
Eco24I	GRGCYC	1 cut(s)	294
Eco52I	CGGCCG	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	292
EcoICRI	GAGCTC	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	294
FaeI	CATG	5 cut(s)	219, 298, 434, 498, 822
FalI	AAGNNNNNCTT	4 cut(s)	30, 62, 92, 124
FatI	CATG	5 cut(s)	215, 294, 430, 494, 818
Fnu4HI	GCNGC	2 cut(s)	229, 271
FokI	GGATG	7 cut(s)	89, 175, 455, 482, 563, 569, 758
FriOI	GRGCYC	1 cut(s)	294
Fsp4HI	GCNGC	2 cut(s)	229, 271
FspBI	CTAG	2 cut(s)	180, 524
GlaI	GCGC	1 cut(s)	658
GluI	GCNGC	2 cut(s)	229, 271
HaeIII	GGCC	2 cut(s)	155, 561
HapII	CCGG	3 cut(s)	152, 156, 212
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	659
Hin1II	CATG	5 cut(s)	219, 298, 434, 498, 822
Hin6I	GCGC	1 cut(s)	657
HinP1I	GCGC	1 cut(s)	657
HincII	GTYRAC	2 cut(s)	436, 641
HindII	GTYRAC	2 cut(s)	436, 641
HindIII	AAGCTT	1 cut(s)	54
HinfI	GANTC	3 cut(s)	17, 118, 320
HpaII	CCGG	3 cut(s)	152, 156, 212
HphI	GGTGA	2 cut(s)	55, 691
Hpy166II	GTNNAC	2 cut(s)	436, 641
Hpy188I	TCNGA	3 cut(s)	89, 106, 325
Hpy188III	TCNNGA	3 cut(s)	295, 486, 788
Hpy8I	GTNNAC	2 cut(s)	436, 641
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	2 cut(s)	320, 629
HpyCH4III	ACNGT	2 cut(s)	67, 627
HpyCH4IV	ACGT	2 cut(s)	311, 663
HpyCH4V	TGCA	2 cut(s)	577, 679
HpyF10VI	GCNNNNNNNGC	2 cut(s)	355, 665
HpyF3I	CTNAG	2 cut(s)	465, 528
HpySE526I	ACGT	2 cut(s)	311, 663
Hsp92II	CATG	5 cut(s)	219, 298, 434, 498, 822
HspAI	GCGC	1 cut(s)	657
Kzo9I	GATC	5 cut(s)	60, 94, 685, 790, 835
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	6 cut(s)	165, 169, 225, 533, 665, 789
LweI	GCATC	3 cut(s)	541, 666, 780
MaeI	CTAG	2 cut(s)	180, 524
MaeII	ACGT	2 cut(s)	311, 663
MalI	GATC	5 cut(s)	62, 96, 687, 792, 837
MboI	GATC	5 cut(s)	60, 94, 685, 790, 835
MboII	GAAGA	3 cut(s)	47, 211, 276
MfeI	CAATTG	1 cut(s)	399
MflI	RGATCY	2 cut(s)	685, 790
MhlI	GDGCHC	2 cut(s)	294, 609
MluCI	AATT	4 cut(s)	399, 645, 693, 744
MlyI	GAGTC	2 cut(s)	127, 314
MmeI	TCCRAC	4 cut(s)	67, 84, 140, 176
MroXI	GAANNNNTTC	3 cut(s)	42, 175, 255
MseI	TTAA	2 cut(s)	240, 303
MslI	CAYNNNNRTG	1 cut(s)	417
MspI	CCGG	3 cut(s)	152, 156, 212
MunI	CAATTG	1 cut(s)	399
MvnI	CGCG	2 cut(s)	603, 657
MwoI	GCNNNNNNNGC	2 cut(s)	355, 665
NdeII	GATC	5 cut(s)	60, 94, 685, 790, 835
NheI	GCTAGC	1 cut(s)	523
NlaIII	CATG	5 cut(s)	219, 298, 434, 498, 822
NlaIV	GGNNCC	2 cut(s)	6, 687
NspI	RCATGY	3 cut(s)	219, 498, 822
OliI	CACNNNNGTG	1 cut(s)	417
PagI	TCATGA	1 cut(s)	294
PaqCI	CACCTGC	1 cut(s)	670
PdmI	GAANNNNTTC	3 cut(s)	42, 175, 255
PfeI	GAWTC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	230, 272
PleI	GAGTC	2 cut(s)	126, 314
PpsI	GAGTC	2 cut(s)	126, 314
Psp124BI	GAGCTC	1 cut(s)	294
PspN4I	GGNNCC	2 cut(s)	6, 687
PsrI	GAACNNNNNNTAC	2 cut(s)	445, 477
PsuI	RGATCY	2 cut(s)	685, 790
RsaI	GTAC	2 cut(s)	137, 314
RsaNI	GTAC	2 cut(s)	136, 313
RseI	CAYNNNNRTG	1 cut(s)	417
SacI	GAGCTC	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	240, 303
SatI	GCNGC	2 cut(s)	229, 271
Sau3AI	GATC	5 cut(s)	60, 94, 685, 790, 835
SchI	GAGTC	2 cut(s)	127, 314
SduI	GDGCHC	2 cut(s)	294, 609
SfaNI	GCATC	3 cut(s)	541, 666, 780
SmiMI	CAYNNNNRTG	1 cut(s)	417
SmlI	CTYRAG	2 cut(s)	501, 786
SmoI	CTYRAG	2 cut(s)	501, 786
Sse9I	AATT	4 cut(s)	399, 645, 693, 744
SsiI	CCGC	4 cut(s)	128, 229, 270, 554
SspMI	CTAG	2 cut(s)	180, 524
SstI	GAGCTC	1 cut(s)	294
TaaI	ACNGT	2 cut(s)	67, 627
TaiI	ACGT	2 cut(s)	314, 666
TaqI	TCGA	1 cut(s)	249
TasI	AATT	4 cut(s)	399, 645, 693, 744
TatI	WGTACW	1 cut(s)	135
TauI	GCSGC	2 cut(s)	231, 273
TfiI	GAWTC	1 cut(s)	17
Tru1I	TTAA	2 cut(s)	240, 303
Tru9I	TTAA	2 cut(s)	240, 303
TspDTI	ATGAA	4 cut(s)	48, 236, 311, 603
XceI	RCATGY	3 cut(s)	219, 498, 822
XmnI	GAANNNNTTC	3 cut(s)	42, 175, 255
XspI	CTAG	2 cut(s)	180, 524

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.