Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000965.1

Orthogroup ID

OG0000386

Physical Location & Seq

Genomic Coordinates Forward (+)

59894 .. 60184

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000965.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

atgcagaaatgttatgaacaaacagaacgcgagtaccaacaaaggcacaaacagtttgaggaaggtcaactaattgagcaacgcgctgaggatgctcgcacgatgcaggtggatccatcaattttcaccccaagaaagaggagttattgggagaggaagcaacagcaaataattgataaggaggcacaaacttcaagcattccggaacaatctcaagatcctacaccccctgaaggagacaacacaagcttgaccacttatgatccacttggcgagacatcttggatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000959 GO:0000963 GO:0000966 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004016 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009791 GO:0009845 GO:0009975 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0016556 GO:0016787 GO:0016788 GO:0016829 GO:0016849 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048856 GO:0071704 GO:0080156 GO:0090304 GO:0090305 GO:0090351 GO:0090615 GO:0097159 GO:0140053 GO:1900864 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

96

Amino Acids

11.44

Weight (kDa)

4.75

Isoelectric Point (pI)

64.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000386)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g44301 FvH4_5g19180 FvH4_6g21610 FvH4_6g22213 FvH4_6g33100 FvH4_6g34882
malus_domestica	MD00G1014200.v1.1 MD04G1097600.v1.1 MD13G1034300.v1.1
pyrus_communis	pycom01g05740 pycom04g10190 pycom05g05910 pycom05g14840 pycom07g10040 pycom08g16560 pycom09g00370 pycom10g03940 pycom10g15460 pycom11g15220 pycom12g07590 pycom14g10750 pycom14g14610 pycom15g20370
rosa_chinensis	RchiOBHm_Chr4g0392971 RchiOBHm_Chr4g0409971 RchiOBHm_Chr5g0059411 RchiOBHm_Chr6g0305091 RchiOBHm_Chr7g0202551 RchiOBHm_Chr7g0242211
rosa_laevigata	RLG00000003630 RLG00000016594
rosa_multiflora	Rmu_sc0000018.1_g000003 Rmu_sc0000288.1_g000031 Rmu_sc0000327.1_g000003 Rmu_sc0000361.1_g000009 Rmu_sc0000546.1_g000077 Rmu_sc0000616.1_g000024 Rmu_sc0000623.1_g000005 Rmu_sc0000704.1_g000009 Rmu_sc0000749.1_g000026 Rmu_sc0000965.1_g000012 Rmu_sc0001144.1_g000024 Rmu_sc0001144.1_g000026 Rmu_sc0001159.1_g000053 Rmu_sc0001348.1_g000017 Rmu_sc0001585.1_g000015 Rmu_sc0001651.1_g000017 Rmu_sc0001832.1_g000013 Rmu_sc0001838.1_g000003 Rmu_sc0001977.1_g000020 Rmu_sc0002983.1_g000011 Rmu_sc0003270.1_g000026 Rmu_sc0003317.1_g000014 Rmu_sc0003517.1_g000013 Rmu_sc0003543.1_g000011 Rmu_sc0003629.1_g000008 Rmu_sc0003731.1_g000005 Rmu_sc0004088.1_g000005 Rmu_sc0004088.1_g000006 Rmu_sc0004094.1_g000035 Rmu_sc0004324.1_g000006 Rmu_sc0005106.1_g000004 Rmu_sc0005198.1_g000006 Rmu_sc0005599.1_g000009 Rmu_sc0005762.1_g000008 Rmu_sc0006168.1_g000029 Rmu_sc0006273.1_g000014 Rmu_sc0006399.1_g000010 Rmu_sc0006632.1_g000010 Rmu_sc0006656.1_g000001 Rmu_sc0006875.1_g000002 Rmu_sc0007017.1_g000006 Rmu_sc0007034.1_g000017 Rmu_sc0007840.1_g000007 Rmu_sc0009945.1_g000003 Rmu_sc0010071.1_g000002 Rmu_sc0010503.1_g000005 Rmu_sc0011218.1_g000008 Rmu_sc0014846.1_g000007 Rmu_sc0015852.1_g000002 Rmu_sc0029270.1_g000003 Rmu_sc0036358.1_g000001 Rmu_ssc0000050.1_g000071 Rmu_ssc0000110.1_g000008 Rmu_ssc0000267.1_g000009
rosa_roxburghii	Rroxscaffold_2G00100340 Rroxscaffold_2G00144280 Rroxscaffold_3G00221910
rosa_rugosa	Rorug04G0175800
rosa_wichuraiana	Rw0G012500 Rw0G013760 Rw0G014530 Rw0G021600 Rw2G019730 Rw2G045390 Rw3G001890 Rw3G025260 Rw3G029050 Rw4G000250 Rw5G014160 Rw5G031520 Rw5G036440 Rw6G023350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	97
Acc36I	ACCTGC	1 cut(s)	97
AccII	CGCG	2 cut(s)	30, 84
AccIII	TCCGGA	1 cut(s)	202
AclWI	GGATC	4 cut(s)	107, 120, 212, 257
AcuI	CTGAAG	1 cut(s)	252
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	1 cut(s)	233
AgsI	TTSAA	1 cut(s)	195
AluBI	AGCT	1 cut(s)	249
AluI	AGCT	1 cut(s)	249
Alw26I	GTCTC	2 cut(s)	231, 269
AlwI	GGATC	4 cut(s)	107, 120, 212, 257
Aor13HI	TCCGGA	1 cut(s)	202
AspLEI	GCGC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	118
BaeI	ACNNNNGTAYC	2 cut(s)	17, 50
BamHI	GGATCC	1 cut(s)	112
BbvCI	CCTCAGC	1 cut(s)	87
BccI	CCATC	1 cut(s)	124
BcoDI	GTCTC	2 cut(s)	231, 269
BfuAI	ACCTGC	1 cut(s)	97
BmiI	GGNNCC	1 cut(s)	114
BmsI	GCATC	2 cut(s)	82, 93
Bpu10I	CCTNAGC	1 cut(s)	87
BpuEI	CTTGAG	1 cut(s)	198
BsaWI	WCCGGW	1 cut(s)	202
Bsc4I	CCNNNNNNNGG	1 cut(s)	233
BseAI	TCCGGA	1 cut(s)	202
BseGI	GGATG	2 cut(s)	97, 291
BseLI	CCNNNNNNNGG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	78
BseRI	GAGGAG	1 cut(s)	154
Bsh1236I	CGCG	2 cut(s)	30, 84
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	233
BsmAI	GTCTC	2 cut(s)	231, 269
BsmI	GAATGC	1 cut(s)	198
Bsp13I	TCCGGA	1 cut(s)	202
Bsp143I	GATC	3 cut(s)	112, 217, 262
BspCNI	CTCAG	1 cut(s)	79
BspEI	TCCGGA	1 cut(s)	202
BspFNI	CGCG	2 cut(s)	30, 84
BspLI	GGNNCC	1 cut(s)	114
BspMI	ACCTGC	1 cut(s)	97
BspPI	GGATC	4 cut(s)	107, 120, 212, 257
BssMI	GATC	3 cut(s)	112, 217, 262
Bst4CI	ACNGT	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	1 cut(s)	87
BstF5I	GGATG	2 cut(s)	97, 291
BstFNI	CGCG	2 cut(s)	30, 84
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	3 cut(s)	115, 220, 265
BstMAI	GTCTC	2 cut(s)	231, 269
BstMBI	GATC	3 cut(s)	112, 217, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	92
BstUI	CGCG	2 cut(s)	30, 84
BstX2I	RGATCY	2 cut(s)	112, 217
BstYI	RGATCY	2 cut(s)	112, 217
BtsCI	GGATG	2 cut(s)	97, 291
BveI	ACCTGC	1 cut(s)	97
Cac8I	GCNNGC	1 cut(s)	97
CfoI	GCGC	1 cut(s)	86
Csp6I	GTAC	1 cut(s)	34
CviJI	RGCY	1 cut(s)	249
CviKI_1	RGCY	1 cut(s)	249
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	3 cut(s)	114, 219, 264
DpnII	GATC	3 cut(s)	112, 217, 262
Eco57I	CTGAAG	1 cut(s)	252
FaiI	YATR	2 cut(s)	15, 261
FokI	GGATG	1 cut(s)	104
GlaI	GCGC	1 cut(s)	85
HapII	CCGG	1 cut(s)	203
HhaI	GCGC	1 cut(s)	86
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HincII	GTYRAC	1 cut(s)	68
HindII	GTYRAC	1 cut(s)	68
HindIII	AAGCTT	1 cut(s)	247
HpaII	CCGG	1 cut(s)	203
HphI	GGTGA	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188III	TCNNGA	2 cut(s)	203, 215
Hpy8I	GTNNAC	1 cut(s)	68
HpyAV	CCTTC	2 cut(s)	56, 227
HpyCH4III	ACNGT	1 cut(s)	54
HpyCH4V	TGCA	2 cut(s)	4, 106
HpyF10VI	GCNNNNNNNGC	1 cut(s)	92
HpyF3I	CTNAG	1 cut(s)	87
HspAI	GCGC	1 cut(s)	84
Kpn2I	TCCGGA	1 cut(s)	202
Kzo9I	GATC	3 cut(s)	112, 217, 262
LpnPI	CCDG	3 cut(s)	92, 216, 243
LweI	GCATC	2 cut(s)	82, 93
MalI	GATC	3 cut(s)	114, 219, 264
MboI	GATC	3 cut(s)	112, 217, 262
MflI	RGATCY	2 cut(s)	112, 217
MluCI	AATT	3 cut(s)	72, 120, 171
MnlI	CCTC	5 cut(s)	52, 82, 132, 147, 175
MroI	TCCGGA	1 cut(s)	202
MspI	CCGG	1 cut(s)	203
Mva1269I	GAATGC	1 cut(s)	198
MvnI	CGCG	2 cut(s)	30, 84
MwoI	GCNNNNNNNGC	1 cut(s)	92
NdeII	GATC	3 cut(s)	112, 217, 262
NlaIV	GGNNCC	1 cut(s)	114
PaqCI	CACCTGC	1 cut(s)	97
PctI	GAATGC	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	114
PsuI	RGATCY	2 cut(s)	112, 217
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
Sau3AI	GATC	3 cut(s)	112, 217, 262
SetI	ASST	3 cut(s)	67, 111, 251
SfaNI	GCATC	2 cut(s)	82, 93
SmlI	CTYRAG	1 cut(s)	213
SmoI	CTYRAG	1 cut(s)	213
Sse9I	AATT	3 cut(s)	72, 120, 171
TaaI	ACNGT	1 cut(s)	54
TasI	AATT	3 cut(s)	72, 120, 171
TspDTI	ATGAA	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.