RchiOBHm_Chr2g0142161

Importin-5-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
59645940 .. 59646897
958 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 207 bp
ATGATAAAAAATTTGGAGCAAGTGGTGGCAATGGTCTTGAACTCGTTTCAAGATCCTCATCCTCGTGTAAGGTGGGCAGCTATTAATGCGATTGGACAGTTGTCTACTGATTTGGGCCCAGACCTGCAAGTTCAATATCATCAACGGGTGCTTCCGGCATTAGCTGCTGCCATGGATGATTTTCAGAATCCTCGTGTGCAGAAATAA

Protein Analysis

68

Amino Acids

7.67

Weight (kDa)

6.7

Isoelectric Point (pI)

24.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HEAT_2 PF13646 6 - 67 3.2e-06 HEAT repeats
HEAT PF02985 10 - 36 3.2e-06 HEAT repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000344)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G19820
fragaria_vesca FvH4_1g21410 FvH4_1g28300 FvH4_1g28300 FvH4_2g17651 FvH4_3g45470 FvH4_3g45470
malus_domestica MD00G1158900.v1.1 MD03G1004600.v1.1 MD03G1004700.v1.1 MD05G1225200.v1.1 MD11G1005300.v1.1 MD11G1005800.v1.1
prunus_persica Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.6G004500_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1 Prupe.7G004800_v2.0.a1
pyrus_communis pycom03g00480 pycom03g00490 pycom03g00500 pycom11g00440 pycom11g00450
rosa_chinensis RchiOBHm_Chr1g0324711 RchiOBHm_Chr2g0142151 RchiOBHm_Chr2g0142161 RchiOBHm_Chr3g0475691 RchiOBHm_Chr3g0496831 RchiOBHm_Chr4g0399761 RchiOBHm_Chr4g0399771 RchiOBHm_Chr4g0399781 RchiOBHm_Chr4g0419561 RchiOBHm_Chr5g0054221 RchiOBHm_Chr5g0078241 RchiOBHm_Chr5g0083261 RchiOBHm_Chr6g0253081 RchiOBHm_Chr6g0253091 RchiOBHm_Chr6g0253101
rosa_laevigata RLG00000006894 RLG00000017613 RLG00000022498 RLG00000023521 RLG00000029311 RLG00000034357 RLG00000037024
rosa_multiflora Rmu_co8031396.1_g000001 Rmu_co8481369.1_g000001 Rmu_sc0000455.1_g000002 Rmu_sc0000810.1_g000007 Rmu_sc0001438.1_g000001 Rmu_sc0001692.1_g000008 Rmu_sc0001692.1_g000009 Rmu_sc0002130.1_g000004 Rmu_sc0002481.1_g000043 Rmu_sc0004932.1_g000025 Rmu_sc0004967.1_g000012 Rmu_sc0006889.1_g000031 Rmu_sc0011792.1_g000006 Rmu_sc0013655.1_g000001 Rmu_sc0036178.1_g000001 Rmu_sc0040082.1_g000001 Rmu_sc0041125.1_g000001
rosa_roxburghii Rroxscaffold_2G00138150 Rroxscaffold_4G00314380 Rroxscaffold_5G00362400 Rroxscaffold_6G00388660 Rroxscaffold_6G00393970
rosa_rugosa Rorug02G0091400 Rorug03G0288200 Rorug03G0288200 Rorug05G0483800
rosa_samantha Rh1AG440500 Rh2DG505100 Rh2DG505200 Rh3AG331800 Rh3BG368400 Rh3CG343100 Rh3CG364700 Rh3DG367800 Rh4BG222300 Rh4CG233300 Rh5AG533200 Rh5BG560500 Rh5CG583200 Rh5DG381000 Rh5DG569800 Rh6AG307400 Rh6AG307500 Rh6AG307600 Rh7AG013900 Rh7AG014000 Rh7AG153300 Rh7AG154100 Rh7AG283000 Rh7AG385300 Rh7AG446100 Rh7AG487800 Rh7CG302200 Rh7DG365100 Rh7DG365200
rosa_wichuraiana Rw1G008740 Rw2G039350 Rw3G029040 Rw4G018940 Rw4G018950 Rw5G049970 Rw6G002460

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 132
AccI GTMKAC 1 cut(s) 104
AclWI GGATC 1 cut(s) 47
AcsI RAATTY 1 cut(s) 10
AgsI TTSAA 3 cut(s) 40, 50, 134
AluBI AGCT 2 cut(s) 80, 164
AluI AGCT 2 cut(s) 80, 164
AlwI GGATC 1 cut(s) 47
AoxI GGCC 1 cut(s) 115
ApaI GGGCCC 1 cut(s) 119
ApeKI GCWGC 3 cut(s) 77, 164, 167
ApoI RAATTY 1 cut(s) 10
AseI ATTAAT 1 cut(s) 84
AspS9I GGNCC 2 cut(s) 115, 116
BaeGI GKGCMC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 119
BauI CACGAG 2 cut(s) 63, 192
BbvI GCAGC 3 cut(s) 89, 151, 154
BfuAI ACCTGC 1 cut(s) 132
BisI GCNGC 3 cut(s) 78, 165, 168
BlsI GCNGC 3 cut(s) 79, 166, 169
BmgT120I GGNCC 2 cut(s) 115, 116
BmiI GGNNCC 1 cut(s) 117
BoxI GACNNNNGTC 1 cut(s) 100
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 171
Bse3DI GCAATG 1 cut(s) 36
Bse8I GATNNNNATC 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 2 cut(s) 58, 181
BseJI GATNNNNATC 1 cut(s) 57
BseMI GCAATG 1 cut(s) 36
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 3 cut(s) 89, 151, 154
BshFI GGCC 1 cut(s) 117
BsiSI CCGG 1 cut(s) 155
BsnI GGCC 1 cut(s) 117
Bsp120I GGGCCC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 52
Bsp19I CCATGG 1 cut(s) 171
BspANI GGCC 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 132
BspPI GGATC 1 cut(s) 47
BsrDI GCAATG 1 cut(s) 36
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 52
BssSI CACGAG 2 cut(s) 63, 192
BssT1I CCWWGG 1 cut(s) 171
Bst2BI CACGAG 2 cut(s) 63, 192
Bst4CI ACNGT 1 cut(s) 99
BstAPI GCANNNNNTGC 1 cut(s) 164
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 2 cut(s) 58, 181
BstKTI GATC 1 cut(s) 55
BstMBI GATC 1 cut(s) 52
BstMWI GCNNNNNNNGC 2 cut(s) 86, 164
BstPAI GACNNNNGTC 1 cut(s) 100
BstSLI GKGCMC 1 cut(s) 119
BstV1I GCAGC 3 cut(s) 89, 151, 154
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BsuRI GGCC 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 2 cut(s) 58, 181
BveI ACCTGC 1 cut(s) 132
Cfr13I GGNCC 2 cut(s) 115, 116
CviAII CATG 1 cut(s) 172
CviJI RGCY 3 cut(s) 80, 117, 164
CviKI_1 RGCY 3 cut(s) 80, 117, 164
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
Eco130I CCWWGG 1 cut(s) 171
Eco24I GRGCYC 1 cut(s) 119
EcoT14I CCWWGG 1 cut(s) 171
EcoT38I GRGCYC 1 cut(s) 119
ErhI CCWWGG 1 cut(s) 171
FaeI CATG 1 cut(s) 175
FaiI YATR 1 cut(s) 173
FatI CATG 1 cut(s) 171
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 3 cut(s) 78, 165, 168
FokI GGATG 2 cut(s) 45, 188
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 3 cut(s) 78, 165, 168
GluI GCNGC 3 cut(s) 78, 165, 168
HaeIII GGCC 1 cut(s) 117
HapII CCGG 1 cut(s) 155
Hin1II CATG 1 cut(s) 175
HinfI GANTC 1 cut(s) 187
HpaII CCGG 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 186
Hpy188III TCNNGA 2 cut(s) 37, 50
Hpy8I GTNNAC 1 cut(s) 105
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 127, 199
HpyF10VI GCNNNNNNNGC 2 cut(s) 86, 164
Hsp92II CATG 1 cut(s) 175
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 3 cut(s) 132, 137, 168
Lsp1109I GCAGC 3 cut(s) 89, 151, 154
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MflI RGATCY 1 cut(s) 52
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 1 cut(s) 10
MnlI CCTC 3 cut(s) 66, 72, 201
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 63
MspI CCGG 1 cut(s) 155
MwoI GCNNNNNNNGC 2 cut(s) 86, 164
NcoI CCATGG 1 cut(s) 171
NdeII GATC 1 cut(s) 52
NlaIII CATG 1 cut(s) 175
NlaIV GGNNCC 1 cut(s) 117
PfeI GAWTC 1 cut(s) 187
PkrI GCNGC 3 cut(s) 79, 166, 169
PshAI GACNNNNGTC 1 cut(s) 100
PshBI ATTAAT 1 cut(s) 84
PspN4I GGNNCC 1 cut(s) 117
PspOMI GGGCCC 1 cut(s) 115
PspPI GGNCC 2 cut(s) 115, 116
PsuI RGATCY 1 cut(s) 52
RseI CAYNNNNRTG 1 cut(s) 63
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 3 cut(s) 78, 165, 168
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 2 cut(s) 115, 116
SduI GDGCHC 1 cut(s) 119
SetI ASST 4 cut(s) 74, 82, 126, 166
SmiMI CAYNNNNRTG 1 cut(s) 63
Sse9I AATT 1 cut(s) 10
StyI CCWWGG 1 cut(s) 171
TaaI ACNGT 1 cut(s) 99
TasI AATT 1 cut(s) 10
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseI GCWGC 3 cut(s) 77, 164, 167
VspI ATTAAT 1 cut(s) 84
XapI RAATTY 1 cut(s) 10
XmiI GTMKAC 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.