AT1G43260

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0000698
Physical Location & Seq
Forward (+)
16318253 .. 16319234
982 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G43260.1

Sequence Viewer

Length: 885 bp
ATGGTAAATGTTGATGGAAAACGAGAGGAGGATGAAGAAGTAATTGAAGTAGAAGGAATGGGAGCAAACAAAAGTGCTCGCATGCTTGAAAGATTACATGTGGTACATCAATATGTTGCTAGATGGGTGTATTCTCATGGCATTCCTTTTAATGCTATTGCAAATGATGATTTAAGAAGAATGCTTGAAGTCGCTGGACAGTTTGGACCAGGTGTTACTCCTCCTAGTCAATATCAGTTGAGGGAGCCTTTGTTAAAAGAAGAGGTTGTTCGAATGAAAGGTTTGATGGAAGAACAAGAAGATGAGTGGAGAGTTAATGGATGTTCCGTAACGACAGATTCTTGGTCGGATAGAAAAAGAAGGTCAATCATGAATTTGTGTATCAACTGCAAAGAAGGTACAATGTTTCTCTCTTCTAAAGATTGCTTTGATGATTCCCATACGGGTGAATATATCTTTGCATATGTCAATGAGTACTGCATCAAAAATTTAGGTGGAGATCATGTTGTTCAAGTAGTAACGAACAATGCCACTAACAACATAACTGCTGCAAAGTTGTTAAAGGAGGTAAGACCCACCATATTTTGGACTTTTTGTGCAACTCACACAATAAATCTGATGGTAGAAGGTATTTCTAAACTTGCTATGTCTGACGAAATAGTTAAAATGGCCAAAGCGTTTACCATTTTTATATACGCTCATCACCAGACCTTGTCCATGATGAGGAGTTTTACCAAGAGAAGAGATATTGTGAGGCCTGGAATAATTGGATTTGCATCGGCTTTTCGTACTTTGAAAAGTTTGGTAGAGAAGGAAGAAAATTTAAAGGTAAAAAGAAAAAAAAAGAAAAAGCTCTCGAAGGCGACGACGATGGTGGTACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

294

Amino Acids

33.62

Weight (kDa)

8.91

Isoelectric Point (pI)

37.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 75 - 226 3.9e-53 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 585
AcoI YGGCCR 1 cut(s) 669
AcsI RAATTY 3 cut(s) 373, 487, 820
AfaI GTAC 5 cut(s) 105, 400, 476, 790, 879
AfiI CCNNNNNNNGG 2 cut(s) 585, 723
AflIII ACRYGT 1 cut(s) 97
AgsI TTSAA 5 cut(s) 47, 89, 188, 512, 796
AjnI CCWGG 2 cut(s) 208, 757
AluBI AGCT 1 cut(s) 853
AluI AGCT 1 cut(s) 853
Alw21I GWGCWC 1 cut(s) 79
AoxI GGCC 2 cut(s) 669, 755
ApeKI GCWGC 1 cut(s) 548
ApoI RAATTY 3 cut(s) 373, 487, 820
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 2 cut(s) 458, 695
AsuII TTCGAA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 206
BalI TGGCCA 1 cut(s) 671
Bbv12I GWGCWC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 535
BccI CCATC 5 cut(s) 8, 117, 280, 613, 865
BciT130I CCWGG 2 cut(s) 210, 759
BfaI CTAG 3 cut(s) 120, 225, 883
BisI GCNGC 1 cut(s) 549
BlsI GCNGC 1 cut(s) 550
BmcAI AGTACT 1 cut(s) 476
Bme1390I CCNGG 2 cut(s) 210, 759
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 1 cut(s) 246
BmrFI CCNGG 2 cut(s) 210, 759
BmsI GCATC 2 cut(s) 489, 785
Bpu14I TTCGAA 1 cut(s) 271
BsaBI GATNNNNATC 1 cut(s) 775
BsaXI ACNNNNNCTCC 4 cut(s) 236, 266, 489, 519
Bsc4I CCNNNNNNNGG 2 cut(s) 585, 723
Bse8I GATNNNNATC 1 cut(s) 775
BseBI CCWGG 2 cut(s) 210, 759
BseGI GGATG 2 cut(s) 37, 326
BseJI GATNNNNATC 1 cut(s) 775
BseLI CCNNNNNNNGG 2 cut(s) 585, 723
BseRI GAGGAG 3 cut(s) 41, 210, 739
BseXI GCAGC 1 cut(s) 535
BshFI GGCC 2 cut(s) 671, 757
BsiHKAI GWGCWC 1 cut(s) 79
BslI CCNNNNNNNGG 2 cut(s) 585, 723
BsmI GAATGC 2 cut(s) 141, 186
BsnI GGCC 2 cut(s) 671, 757
Bsp119I TTCGAA 1 cut(s) 271
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 499
BspANI GGCC 2 cut(s) 671, 757
BspHI TCATGA 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 246
BspT104I TTCGAA 1 cut(s) 271
BssMI GATC 1 cut(s) 499
Bst2UI CCWGG 2 cut(s) 210, 759
Bst4CI ACNGT 1 cut(s) 201
Bst6I CTCTTC 3 cut(s) 255, 418, 736
BstBI TTCGAA 1 cut(s) 271
BstC8I GCNNGC 2 cut(s) 79, 83
BstF5I GGATG 2 cut(s) 37, 326
BstKTI GATC 1 cut(s) 502
BstMBI GATC 1 cut(s) 499
BstNI CCWGG 2 cut(s) 210, 759
BstNSI RCATGY 2 cut(s) 85, 101
BstSCI CCNGG 2 cut(s) 208, 757
BstV1I GCAGC 1 cut(s) 535
BsuRI GGCC 2 cut(s) 671, 757
BtsCI GGATG 2 cut(s) 37, 326
Cac8I GCNNGC 2 cut(s) 79, 83
CciI TCATGA 1 cut(s) 369
Cfr13I GGNCC 1 cut(s) 206
CsiI ACCWGGT 1 cut(s) 208
Csp6I GTAC 5 cut(s) 104, 399, 475, 789, 878
CviAII CATG 6 cut(s) 82, 98, 137, 370, 503, 718
CviJI RGCY 5 cut(s) 247, 671, 757, 782, 853
CviKI_1 RGCY 5 cut(s) 247, 671, 757, 782, 853
CviQI GTAC 5 cut(s) 104, 399, 475, 789, 878
DpnI GATC 1 cut(s) 501
DpnII GATC 1 cut(s) 499
DraI TTTAAA 1 cut(s) 825
EaeI YGGCCR 1 cut(s) 669
Eam1104I CTCTTC 3 cut(s) 255, 418, 736
EarI CTCTTC 3 cut(s) 255, 418, 736
Eco147I AGGCCT 1 cut(s) 757
Eco47I GGWCC 1 cut(s) 206
EcoRII CCWGG 2 cut(s) 208, 757
FaeI CATG 6 cut(s) 85, 101, 140, 373, 506, 721
FatI CATG 6 cut(s) 81, 97, 136, 369, 502, 717
FauNDI CATATG 1 cut(s) 463
Fnu4HI GCNGC 1 cut(s) 549
FokI GGATG 2 cut(s) 44, 333
Fsp4HI GCNGC 1 cut(s) 549
FspBI CTAG 3 cut(s) 120, 225, 883
GluI GCNGC 1 cut(s) 549
HaeIII GGCC 2 cut(s) 671, 757
Hin1II CATG 6 cut(s) 85, 101, 140, 373, 506, 721
HinfI GANTC 2 cut(s) 338, 434
HphI GGTGA 2 cut(s) 458, 695
Hpy166II GTNNAC 1 cut(s) 681
Hpy188I TCNGA 3 cut(s) 349, 618, 652
Hpy188III TCNNGA 2 cut(s) 370, 856
Hpy8I GTNNAC 1 cut(s) 681
Hpy99I CGWCG 2 cut(s) 868, 871
HpyAV CCTTC 6 cut(s) 47, 354, 389, 620, 805, 853
HpyCH4III ACNGT 1 cut(s) 201
HpyCH4V TGCA 7 cut(s) 161, 390, 461, 480, 551, 599, 776
Hsp92II CATG 6 cut(s) 85, 101, 140, 373, 506, 721
Kzo9I GATC 1 cut(s) 499
LmnI GCTCC 2 cut(s) 62, 244
LpnPI CCDG 6 cut(s) 180, 195, 222, 719, 744, 771
Lsp1109I GCAGC 1 cut(s) 535
LweI GCATC 2 cut(s) 489, 785
MabI ACCWGGT 1 cut(s) 208
MaeI CTAG 3 cut(s) 120, 225, 883
MaeIII GTNAC 3 cut(s) 214, 328, 517
MalI GATC 1 cut(s) 501
MboI GATC 1 cut(s) 499
MboII GAAGA 8 cut(s) 47, 189, 272, 302, 311, 405, 753, 827
MhlI GDGCHC 1 cut(s) 79
MlsI TGGCCA 1 cut(s) 671
MluCI AATT 5 cut(s) 42, 373, 487, 765, 820
MluNI TGGCCA 1 cut(s) 671
MmeI TCCRAC 1 cut(s) 327
MnlI CCTC 8 cut(s) 19, 22, 231, 234, 256, 559, 717, 747
Mox20I TGGCCA 1 cut(s) 671
MscI TGGCCA 1 cut(s) 671
MseI TTAA 7 cut(s) 150, 173, 254, 315, 560, 663, 824
MslI CAYNNNNRTG 2 cut(s) 111, 444
Msp20I TGGCCA 1 cut(s) 671
MspR9I CCNGG 2 cut(s) 210, 759
Mva1269I GAATGC 2 cut(s) 141, 186
MvaI CCWGG 2 cut(s) 210, 759
NdeI CATATG 1 cut(s) 463
NdeII GATC 1 cut(s) 499
NlaIII CATG 6 cut(s) 85, 101, 140, 373, 506, 721
NlaIV GGNNCC 1 cut(s) 246
NspI RCATGY 2 cut(s) 85, 101
NspV TTCGAA 1 cut(s) 271
PaeI GCATGC 1 cut(s) 85
PagI TCATGA 1 cut(s) 369
PceI AGGCCT 1 cut(s) 757
PciI ACATGT 1 cut(s) 97
PcsI WCGNNNNNNNCGW 1 cut(s) 863
PctI GAATGC 2 cut(s) 141, 186
PfeI GAWTC 2 cut(s) 338, 434
PflFI GACNNNGTC 1 cut(s) 712
PflMI CCANNNNNTGG 1 cut(s) 585
PkrI GCNGC 1 cut(s) 550
PscI ACATGT 1 cut(s) 97
Psp6I CCWGG 2 cut(s) 208, 757
PspGI CCWGG 2 cut(s) 208, 757
PspN4I GGNNCC 1 cut(s) 246
PspPI GGNCC 1 cut(s) 206
PsyI GACNNNGTC 1 cut(s) 712
RsaI GTAC 5 cut(s) 105, 400, 476, 790, 879
RsaNI GTAC 5 cut(s) 104, 399, 475, 789, 878
RseI CAYNNNNRTG 2 cut(s) 111, 444
SaqAI TTAA 7 cut(s) 150, 173, 254, 315, 560, 663, 824
SatI GCNGC 1 cut(s) 549
Sau3AI GATC 1 cut(s) 499
Sau96I GGNCC 1 cut(s) 206
ScaI AGTACT 1 cut(s) 476
ScrFI CCNGG 2 cut(s) 210, 759
SduI GDGCHC 1 cut(s) 79
SexAI ACCWGGT 1 cut(s) 208
SfaNI GCATC 2 cut(s) 489, 785
SfuI TTCGAA 1 cut(s) 271
SinI GGWCC 1 cut(s) 206
SmiMI CAYNNNNRTG 2 cut(s) 111, 444
SphI GCATGC 1 cut(s) 85
Sse9I AATT 5 cut(s) 42, 373, 487, 765, 820
SseBI AGGCCT 1 cut(s) 757
SspMI CTAG 3 cut(s) 120, 225, 883
StuI AGGCCT 1 cut(s) 757
StyD4I CCNGG 2 cut(s) 208, 757
TaaI ACNGT 1 cut(s) 201
TaqI TCGA 2 cut(s) 271, 857
TasI AATT 5 cut(s) 42, 373, 487, 765, 820
TatI WGTACW 1 cut(s) 474
TfiI GAWTC 2 cut(s) 338, 434
Tru1I TTAA 7 cut(s) 150, 173, 254, 315, 560, 663, 824
Tru9I TTAA 7 cut(s) 150, 173, 254, 315, 560, 663, 824
TseI GCWGC 1 cut(s) 548
TspDTI ATGAA 3 cut(s) 48, 290, 386
TspGWI ACGGA 1 cut(s) 316
Tth111I GACNNNGTC 1 cut(s) 712
Van91I CCANNNNNTGG 1 cut(s) 585
VpaK11BI GGWCC 1 cut(s) 206
XapI RAATTY 3 cut(s) 373, 487, 820
XceI RCATGY 2 cut(s) 85, 101
XspI CTAG 3 cut(s) 120, 225, 883
ZrmI AGTACT 1 cut(s) 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.