Rmu_sc0001526.1_g000038

source UniProtKB

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001526.1
Physical Location & Seq
Forward (+)
122909 .. 124454
1546 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001526.1_g000038.1.cds

Sequence Viewer

Length: 426 bp
atggaactgttcacgctactgttcacgtccccaaacaccttcaattcttcctccacagcccaaaacaagctgcaacaagtctatgtccaattcaatgccaagattatcaacaaaaagagaagggctcaagagttgggtgtggatgtgctacttggtaatgaagctagcaaggctcaaggatggattgtggatggtggtgatgaagaagatgacttggatattattagtcaaatagagggagagtattcaggagtggatagtgggcttaggagaagttctagaaatgtagaggtaagagagcttcatgatgaagattttgtatcggatgaggacacagaagaggagggagaagaagaggatgttgagtttgagtccgacaccgaaggagtcttggatggatatggagaggaagagttagagatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

141

Amino Acids

15.86

Weight (kDa)

4.05

Isoelectric Point (pI)

65.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 2 cut(s) 43, 94
AjiI CACGTC 1 cut(s) 27
AluBI AGCT 3 cut(s) 70, 164, 301
AluI AGCT 3 cut(s) 70, 164, 301
ApeKI GCWGC 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 209
AsuNHI GCTAGC 1 cut(s) 164
BanII GRGCYC 1 cut(s) 127
BarI GAAGNNNNNNTAC 2 cut(s) 285, 317
BbvI GCAGC 1 cut(s) 57
BccI CCATC 3 cut(s) 174, 185, 389
BfaI CTAG 2 cut(s) 165, 279
BisI GCNGC 1 cut(s) 71
BlsI GCNGC 1 cut(s) 72
BmgBI CACGTC 1 cut(s) 27
BmtI GCTAGC 1 cut(s) 168
BplI GAGNNNNNCTC 2 cut(s) 109, 141
Bpu10I CCTNAGC 1 cut(s) 266
BpuEI CTTGAG 2 cut(s) 111, 159
BseGI GGATG 6 cut(s) 148, 185, 196, 331, 364, 400
BseRI GAGGAG 1 cut(s) 356
BseXI GCAGC 1 cut(s) 57
BslFI GGGAC 1 cut(s) 13
BsmFI GGGAC 1 cut(s) 13
Bsp1286I GDGCHC 1 cut(s) 127
BspHI TCATGA 1 cut(s) 304
BspOI GCTAGC 1 cut(s) 168
Bst4CI ACNGT 2 cut(s) 9, 21
Bst6I CTCTTC 3 cut(s) 333, 348, 405
BstC8I GCNNGC 1 cut(s) 166
BstDEI CTNAG 1 cut(s) 266
BstF5I GGATG 6 cut(s) 148, 185, 196, 331, 364, 400
BstMWI GCNNNNNNNGC 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 57
BtrI CACGTC 1 cut(s) 27
BtsCI GGATG 6 cut(s) 148, 185, 196, 331, 364, 400
Cac8I GCNNGC 1 cut(s) 166
CciI TCATGA 1 cut(s) 304
CviAII CATG 1 cut(s) 305
CviJI RGCY 7 cut(s) 59, 70, 125, 164, 173, 265, 301
CviKI_1 RGCY 7 cut(s) 59, 70, 125, 164, 173, 265, 301
DdeI CTNAG 1 cut(s) 266
Eam1104I CTCTTC 3 cut(s) 333, 348, 405
EarI CTCTTC 3 cut(s) 333, 348, 405
Eco24I GRGCYC 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 127
FaeI CATG 1 cut(s) 308
FaiI YATR 3 cut(s) 84, 306, 402
FaqI GGGAC 1 cut(s) 13
FatI CATG 1 cut(s) 304
Fnu4HI GCNGC 1 cut(s) 71
FokI GGATG 6 cut(s) 155, 192, 203, 338, 371, 407
FriOI GRGCYC 1 cut(s) 127
Fsp4HI GCNGC 1 cut(s) 71
FspBI CTAG 2 cut(s) 165, 279
GluI GCNGC 1 cut(s) 71
Hin1II CATG 1 cut(s) 308
HinfI GANTC 2 cut(s) 371, 387
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 12, 24
Hpy188I TCNGA 2 cut(s) 325, 376
Hpy188III TCNNGA 4 cut(s) 128, 249, 279, 305
Hpy8I GTNNAC 2 cut(s) 12, 24
HpyAV CCTTC 3 cut(s) 49, 114, 377
HpyCH4III ACNGT 2 cut(s) 9, 21
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 73
HpyF10VI GCNNNNNNNGC 1 cut(s) 170
HpyF3I CTNAG 1 cut(s) 266
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 1 cut(s) 308
LpnPI CCDG 1 cut(s) 234
Lsp1109I GCAGC 1 cut(s) 57
MaeI CTAG 2 cut(s) 165, 279
MaeII ACGT 1 cut(s) 26
MboII GAAGA 8 cut(s) 39, 215, 218, 323, 350, 362, 365, 422
MhlI GDGCHC 1 cut(s) 127
MluCI AATT 2 cut(s) 43, 89
MlyI GAGTC 2 cut(s) 380, 396
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 8 cut(s) 61, 229, 283, 322, 334, 337, 349, 400
MwoI GCNNNNNNNGC 1 cut(s) 170
NheI GCTAGC 1 cut(s) 164
NlaIII CATG 1 cut(s) 308
PagI TCATGA 1 cut(s) 304
PkrI GCNGC 1 cut(s) 72
PleI GAGTC 2 cut(s) 379, 395
PpsI GAGTC 2 cut(s) 379, 395
SatI GCNGC 1 cut(s) 71
SchI GAGTC 2 cut(s) 380, 396
SduI GDGCHC 1 cut(s) 127
SetI ASST 6 cut(s) 29, 41, 72, 166, 294, 303
SmlI CTYRAG 2 cut(s) 126, 174
SmoI CTYRAG 2 cut(s) 126, 174
Sse9I AATT 2 cut(s) 43, 89
SspMI CTAG 2 cut(s) 165, 279
TaaI ACNGT 2 cut(s) 9, 21
TaiI ACGT 1 cut(s) 29
TasI AATT 2 cut(s) 43, 89
TseI GCWGC 1 cut(s) 70
TspDTI ATGAA 4 cut(s) 174, 216, 293, 324
XbaI TCTAGA 1 cut(s) 278
XspI CTAG 2 cut(s) 165, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.