FvH4_6g06672

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000698
Physical Location & Seq
Forward (+)
3935646 .. 3936426
781 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g06672.t1

Sequence Viewer

Length: 471 bp
ATGGCTGGTAGTAGTCGTACTACATCTTCCGGAGGGTCAAATGCAATGTCAGAGATAGATGTGTCTTTGAAGCGTAATTCCGAAGATGTTGGATGGGAATATGGGGCATTGGTGAACCCTTCAAATTTAGACAAAGTGAAGTGCAAGTTATGTGGGAAAGTATTTAGTGGTGGAATATATCGGCTTAAGCAACATATTGCCCACGTGAAGGGGAATGCGGCTTCATGTAATAAGTCTTCGGATGAGGATAAGAAGAAGTGCAAGCAAGCTATTGATGAAGCACACAATAAGAAGAGACAGAAGTATCAACGTGAACAGGAAGTGAGGCAGGAGGTTATTCTTGAAGGGGATGAGGAGGTTGAAGGGAGTATCGGATCTAGAAAACTCCCCCGTACTCTTGGGCCTATGGATAGTTTTGCATCCATCATCGATCCGGATTCTTCAATGAATGGAAGAGAAGAAGTATCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

157

Amino Acids

17.11

Weight (kDa)

7.65

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 29, 433
AciI CCGC 1 cut(s) 218
AclWI GGATC 2 cut(s) 382, 425
AcsI RAATTY 1 cut(s) 124
AcvI CACGTG 1 cut(s) 205
AfaI GTAC 2 cut(s) 19, 394
AfiI CCNNNNNNNGG 1 cut(s) 208
AflII CTTAAG 1 cut(s) 185
AgsI TTSAA 5 cut(s) 70, 123, 344, 362, 444
AluBI AGCT 1 cut(s) 269
AluI AGCT 1 cut(s) 269
Alw26I GTCTC 1 cut(s) 289
AlwI GGATC 2 cut(s) 382, 425
Aor13HI TCCGGA 2 cut(s) 29, 433
AoxI GGCC 1 cut(s) 401
ApoI RAATTY 1 cut(s) 124
ArsI GACNNNNNNTTYG 2 cut(s) 32, 64
AspS9I GGNCC 1 cut(s) 401
AsuHPI GGTGA 1 cut(s) 124
BaeI ACNNNNGTAYC 2 cut(s) 287, 320
BarI GAAGNNNNNNTAC 4 cut(s) 10, 42, 220, 252
BbrPI CACGTG 1 cut(s) 205
BbsI GAAGAC 1 cut(s) 228
BccI CCATC 2 cut(s) 87, 431
BcoDI GTCTC 1 cut(s) 289
BfaI CTAG 1 cut(s) 378
BfrI CTTAAG 1 cut(s) 185
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 401
BmsI GCATC 1 cut(s) 428
BpiI GAAGAC 1 cut(s) 228
Bsa29I ATCGAT 1 cut(s) 429
BsaAI YACGTR 1 cut(s) 205
BsaWI WCCGGW 2 cut(s) 29, 433
Bsc4I CCNNNNNNNGG 1 cut(s) 208
Bse3DI GCAATG 1 cut(s) 51
BseAI TCCGGA 2 cut(s) 29, 433
BseCI ATCGAT 1 cut(s) 429
BseGI GGATG 4 cut(s) 98, 247, 355, 419
BseLI CCNNNNNNNGG 1 cut(s) 208
BseMI GCAATG 1 cut(s) 51
BseRI GAGGAG 1 cut(s) 368
BshFI GGCC 1 cut(s) 403
BshVI ATCGAT 1 cut(s) 429
BsiSI CCGG 2 cut(s) 30, 434
BslI CCNNNNNNNGG 1 cut(s) 208
BsmAI GTCTC 1 cut(s) 289
BsmI GAATGC 1 cut(s) 220
BsnI GGCC 1 cut(s) 403
Bsp13I TCCGGA 2 cut(s) 29, 433
Bsp143I GATC 2 cut(s) 374, 430
BspACI CCGC 1 cut(s) 218
BspANI GGCC 1 cut(s) 403
BspDI ATCGAT 1 cut(s) 429
BspEI TCCGGA 2 cut(s) 29, 433
BspHI TCATGA 1 cut(s) 467
BspPI GGATC 2 cut(s) 382, 425
BspTI CTTAAG 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 51
BssMI GATC 2 cut(s) 374, 430
Bst6I CTCTTC 2 cut(s) 287, 448
BstAFI CTTAAG 1 cut(s) 185
BstBAI YACGTR 1 cut(s) 205
BstC8I GCNNGC 2 cut(s) 263, 267
BstF5I GGATG 4 cut(s) 98, 247, 355, 419
BstKTI GATC 2 cut(s) 377, 433
BstMAI GTCTC 1 cut(s) 289
BstMBI GATC 2 cut(s) 374, 430
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 374
BstYI RGATCY 1 cut(s) 374
Bsu15I ATCGAT 1 cut(s) 429
BsuRI GGCC 1 cut(s) 403
BsuTUI ATCGAT 1 cut(s) 429
BtsCI GGATG 4 cut(s) 98, 247, 355, 419
Cac8I GCNNGC 2 cut(s) 263, 267
CciI TCATGA 1 cut(s) 467
Cfr13I GGNCC 1 cut(s) 401
ClaI ATCGAT 1 cut(s) 429
Csp6I GTAC 2 cut(s) 18, 393
CspCI CAANNNNNGTGG 2 cut(s) 133, 168
CviAII CATG 2 cut(s) 225, 468
CviJI RGCY 5 cut(s) 5, 184, 221, 269, 403
CviKI_1 RGCY 5 cut(s) 5, 184, 221, 269, 403
CviQI GTAC 2 cut(s) 18, 393
DpnI GATC 2 cut(s) 376, 432
DpnII GATC 2 cut(s) 374, 430
Eam1104I CTCTTC 2 cut(s) 287, 448
EarI CTCTTC 2 cut(s) 287, 448
Eco72I CACGTG 1 cut(s) 205
FaeI CATG 2 cut(s) 228, 471
FaiI YATR 7 cut(s) 102, 151, 178, 195, 226, 407, 469
FatI CATG 2 cut(s) 224, 467
Fnu4HI GCNGC 1 cut(s) 219
FokI GGATG 4 cut(s) 105, 254, 362, 406
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 1 cut(s) 378
GluI GCNGC 1 cut(s) 219
HaeIII GGCC 1 cut(s) 403
HapII CCGG 2 cut(s) 30, 434
Hin1II CATG 2 cut(s) 228, 471
HinfI GANTC 1 cut(s) 437
HpaII CCGG 2 cut(s) 30, 434
HphI GGTGA 1 cut(s) 124
Hpy166II GTNNAC 2 cut(s) 115, 314
Hpy188I TCNGA 4 cut(s) 52, 82, 241, 374
Hpy188III TCNNGA 5 cut(s) 30, 341, 378, 434, 468
Hpy8I GTNNAC 2 cut(s) 115, 314
HpyAV CCTTC 4 cut(s) 129, 202, 338, 356
HpyCH4IV ACGT 2 cut(s) 204, 310
HpyCH4V TGCA 4 cut(s) 44, 144, 261, 419
HpySE526I ACGT 2 cut(s) 204, 310
Hsp92II CATG 2 cut(s) 228, 471
Kpn2I TCCGGA 2 cut(s) 29, 433
Kzo9I GATC 2 cut(s) 374, 430
LpnPI CCDG 4 cut(s) 43, 302, 314, 447
LweI GCATC 1 cut(s) 428
MaeI CTAG 1 cut(s) 378
MaeII ACGT 2 cut(s) 204, 310
MalI GATC 2 cut(s) 376, 432
MboI GATC 2 cut(s) 374, 430
MboII GAAGA 8 cut(s) 18, 95, 228, 265, 304, 432, 465, 470
MflI RGATCY 1 cut(s) 374
MluCI AATT 2 cut(s) 76, 124
MmeI TCCRAC 1 cut(s) 70
MnlI CCTC 6 cut(s) 26, 238, 318, 325, 346, 349
MroI TCCGGA 2 cut(s) 29, 433
MseI TTAA 1 cut(s) 186
MspCI CTTAAG 1 cut(s) 185
MspI CCGG 2 cut(s) 30, 434
Mva1269I GAATGC 1 cut(s) 220
NdeII GATC 2 cut(s) 374, 430
NlaIII CATG 2 cut(s) 228, 471
PagI TCATGA 1 cut(s) 467
PctI GAATGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 437
PkrI GCNGC 1 cut(s) 220
PmaCI CACGTG 1 cut(s) 205
PmlI CACGTG 1 cut(s) 205
Ppu21I YACGTR 1 cut(s) 205
PspCI CACGTG 1 cut(s) 205
PspPI GGNCC 1 cut(s) 401
PsuI RGATCY 1 cut(s) 374
RsaI GTAC 2 cut(s) 19, 394
RsaNI GTAC 2 cut(s) 18, 393
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 2 cut(s) 374, 430
Sau96I GGNCC 1 cut(s) 401
SetI ASST 5 cut(s) 207, 271, 313, 336, 360
SfaNI GCATC 1 cut(s) 428
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
Sse9I AATT 2 cut(s) 76, 124
SsiI CCGC 1 cut(s) 218
SspMI CTAG 1 cut(s) 378
TaiI ACGT 2 cut(s) 207, 313
TaqI TCGA 1 cut(s) 429
TasI AATT 2 cut(s) 76, 124
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TspDTI ATGAA 3 cut(s) 213, 291, 461
Vha464I CTTAAG 1 cut(s) 185
XapI RAATTY 1 cut(s) 124
XbaI TCTAGA 1 cut(s) 377
XspI CTAG 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.