Rmu_sc0002284.1_g000006

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002284.1
OG0000698
Physical Location & Seq
Forward (+)
28469 .. 29107
639 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002284.1_g000006.1.cds

Sequence Viewer

Length: 639 bp
atggcatctttcagaggatctaatgctactaatgaagcggatagatcattgaggcgttggtcaaacgatgttggatgggactttgcggtgttggagtatccacacaacttagataagttgaagtgtaagttgtgtgggaaagtaattagtggtggaatacacagaatgaagcaacacattgccaacatcaaggggaatgttgcctcatgcaagaattctacggatgccgataaagccaaatgtatagccgcaatagagggagcaaaaattaagagaaagcaaaaggatatgcatgagaaggaagtgagcgaagaagttgaagtttctcaatcacatgatgtagaagatgtagaaattgaagggccaagtttgtcaagaaaaaggccgcactttcttgggcctatagacaagtttgcatcttcaatcactcccgaggattcaattgatggaagcaagaagatgcgtcaacaaaacattaatgatgccatttggaaggaaagaacacatagtctgcatcaatggttggctaggtgggtgtatgaagccagcattccatttcatgccattgataatgatagcttcaaaagatttgtagaagcggttggtcaatttggcccgggttaccgacctccaacttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

212

Amino Acids

23.97

Weight (kDa)

8.61

Isoelectric Point (pI)

53.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 5 cut(s) 38, 86, 249, 386, 599
AclWI GGATC 1 cut(s) 25
AcsI RAATTY 1 cut(s) 214
AgsI TTSAA 6 cut(s) 121, 320, 359, 423, 441, 583
AluBI AGCT 1 cut(s) 579
AluI AGCT 1 cut(s) 579
AlwI GGATC 1 cut(s) 25
Ama87I CYCGRG 2 cut(s) 431, 616
AoxI GGCC 4 cut(s) 362, 383, 398, 613
ApoI RAATTY 1 cut(s) 214
AseI ATTAAT 1 cut(s) 477
AspS9I GGNCC 3 cut(s) 362, 398, 614
AsuC2I CCSGG 2 cut(s) 617, 618
AvaI CYCGRG 2 cut(s) 431, 616
BccI CCATC 2 cut(s) 69, 440
BciVI GTATCC 1 cut(s) 108
BcnI CCSGG 2 cut(s) 617, 618
BfaI CTAG 1 cut(s) 528
BfmI CTRYAG 1 cut(s) 402
BfuI GTATCC 1 cut(s) 108
BisI GCNGC 2 cut(s) 249, 386
BlsI GCNGC 2 cut(s) 250, 387
Bme1390I CCNGG 2 cut(s) 617, 618
BmeT110I CYCGRG 2 cut(s) 431, 616
BmgT120I GGNCC 3 cut(s) 362, 398, 614
BmrFI CCNGG 2 cut(s) 617, 618
BmsI GCATC 6 cut(s) 14, 214, 425, 450, 472, 523
BpuMI CCSGG 2 cut(s) 617, 618
BsaJI CCNNGG 2 cut(s) 432, 616
Bse3DI GCAATG 1 cut(s) 177
BseDI CCNNGG 2 cut(s) 432, 616
BseGI GGATG 2 cut(s) 80, 229
BseMI GCAATG 1 cut(s) 177
BshFI GGCC 4 cut(s) 364, 385, 400, 615
BsiHKCI CYCGRG 2 cut(s) 431, 616
BsiSI CCGG 1 cut(s) 617
BslFI GGGAC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 549
BsnI GGCC 4 cut(s) 364, 385, 400, 615
BsoBI CYCGRG 2 cut(s) 431, 616
Bsp143I GATC 2 cut(s) 17, 44
BspACI CCGC 5 cut(s) 38, 86, 249, 386, 599
BspANI GGCC 4 cut(s) 364, 385, 400, 615
BspPI GGATC 1 cut(s) 25
BsrDI GCAATG 1 cut(s) 177
BssECI CCNNGG 2 cut(s) 432, 616
BssMI GATC 2 cut(s) 17, 44
BstC8I GCNNGC 1 cut(s) 547
BstDEI CTNAG 1 cut(s) 109
BstEII GGTNACC 1 cut(s) 620
BstF5I GGATG 2 cut(s) 80, 229
BstKTI GATC 2 cut(s) 20, 47
BstMBI GATC 2 cut(s) 17, 44
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstPI GGTNACC 1 cut(s) 620
BstSCI CCNGG 2 cut(s) 615, 616
BstSFI CTRYAG 1 cut(s) 402
BstX2I RGATCY 1 cut(s) 17
BstYI RGATCY 1 cut(s) 17
BsuI GTATCC 1 cut(s) 108
BsuRI GGCC 4 cut(s) 364, 385, 400, 615
BtsCI GGATG 2 cut(s) 80, 229
Cac8I GCNNGC 1 cut(s) 547
Cfr13I GGNCC 3 cut(s) 362, 398, 614
Cfr9I CCCGGG 1 cut(s) 616
CseI GACGC 1 cut(s) 452
CviAII CATG 4 cut(s) 207, 293, 335, 560
CviJI RGCY 9 cut(s) 236, 248, 364, 385, 400, 527, 545, 579, 615
CviKI_1 RGCY 9 cut(s) 236, 248, 364, 385, 400, 527, 545, 579, 615
DdeI CTNAG 1 cut(s) 109
DpnI GATC 2 cut(s) 19, 46
DpnII GATC 2 cut(s) 17, 44
Eco88I CYCGRG 2 cut(s) 431, 616
Eco91I GGTNACC 1 cut(s) 620
EcoO65I GGTNACC 1 cut(s) 620
EcoRI GAATTC 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 294
FaeI CATG 4 cut(s) 210, 296, 338, 563
FaiI YATR 9 cut(s) 208, 245, 290, 294, 336, 404, 507, 540, 561
FaqI GGGAC 1 cut(s) 92
FatI CATG 4 cut(s) 206, 292, 334, 559
Fnu4HI GCNGC 2 cut(s) 249, 386
FokI GGATG 2 cut(s) 87, 236
Fsp4HI GCNGC 2 cut(s) 249, 386
FspBI CTAG 1 cut(s) 528
GluI GCNGC 2 cut(s) 249, 386
HaeIII GGCC 4 cut(s) 364, 385, 400, 615
HapII CCGG 1 cut(s) 617
HgaI GACGC 1 cut(s) 452
Hin1II CATG 4 cut(s) 210, 296, 338, 563
HincII GTYRAC 1 cut(s) 467
HindII GTYRAC 1 cut(s) 467
HinfI GANTC 1 cut(s) 437
HpaII CCGG 1 cut(s) 617
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 1 cut(s) 14
Hpy188III TCNNGA 2 cut(s) 375, 431
Hpy8I GTNNAC 1 cut(s) 467
HpyAV CCTTC 3 cut(s) 292, 353, 487
HpyCH4V TGCA 4 cut(s) 210, 292, 416, 514
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 109
Hsp92II CATG 4 cut(s) 210, 296, 338, 563
Kzo9I GATC 2 cut(s) 17, 44
LmnI GCTCC 1 cut(s) 260
LpnPI CCDG 2 cut(s) 559, 630
LweI GCATC 6 cut(s) 14, 214, 425, 450, 472, 523
MaeI CTAG 1 cut(s) 528
MaeIII GTNAC 1 cut(s) 620
MalI GATC 2 cut(s) 19, 46
MboI GATC 2 cut(s) 17, 44
MboII GAAGA 4 cut(s) 323, 356, 411, 469
MfeI CAATTG 1 cut(s) 441
MflI RGATCY 1 cut(s) 17
MluCI AATT 6 cut(s) 144, 214, 267, 354, 441, 608
MmeI TCCRAC 2 cut(s) 52, 72
MnlI CCTC 6 cut(s) 8, 45, 214, 250, 427, 639
Mph1103I ATGCAT 1 cut(s) 294
MseI TTAA 3 cut(s) 270, 477, 637
MspI CCGG 1 cut(s) 617
MspR9I CCNGG 2 cut(s) 617, 618
MunI CAATTG 1 cut(s) 441
Mva1269I GAATGC 1 cut(s) 549
MwoI GCNNNNNNNGC 1 cut(s) 233
NciI CCSGG 2 cut(s) 617, 618
NdeII GATC 2 cut(s) 17, 44
NlaIII CATG 4 cut(s) 210, 296, 338, 563
NsiI ATGCAT 1 cut(s) 294
PctI GAATGC 1 cut(s) 549
PfeI GAWTC 1 cut(s) 437
PkrI GCNGC 2 cut(s) 250, 387
PshBI ATTAAT 1 cut(s) 477
PspEI GGTNACC 1 cut(s) 620
PspPI GGNCC 3 cut(s) 362, 398, 614
PsuI RGATCY 1 cut(s) 17
SaqAI TTAA 3 cut(s) 270, 477, 637
SatI GCNGC 2 cut(s) 249, 386
Sau3AI GATC 2 cut(s) 17, 44
Sau96I GGNCC 3 cut(s) 362, 398, 614
ScrFI CCNGG 2 cut(s) 617, 618
SetI ASST 3 cut(s) 533, 581, 631
SfaNI GCATC 6 cut(s) 14, 214, 425, 450, 472, 523
SfcI CTRYAG 1 cut(s) 402
SmaI CCCGGG 1 cut(s) 618
Sse9I AATT 6 cut(s) 144, 214, 267, 354, 441, 608
SsiI CCGC 5 cut(s) 38, 86, 249, 386, 599
SspMI CTAG 1 cut(s) 528
StyD4I CCNGG 2 cut(s) 615, 616
TasI AATT 6 cut(s) 144, 214, 267, 354, 441, 608
TauI GCSGC 2 cut(s) 251, 388
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 3 cut(s) 270, 477, 637
Tru9I TTAA 3 cut(s) 270, 477, 637
TspDTI ATGAA 4 cut(s) 48, 182, 548, 555
TspGWI ACGGA 1 cut(s) 236
TspMI CCCGGG 1 cut(s) 616
VspI ATTAAT 1 cut(s) 477
XapI RAATTY 1 cut(s) 214
XmaI CCCGGG 1 cut(s) 616
XspI CTAG 1 cut(s) 528
Zsp2I ATGCAT 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.