FvH4_6g28273

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000698
Physical Location & Seq
Reverse (-)
21762840 .. 21763298
459 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28273.t1

Sequence Viewer

Length: 459 bp
ATGGCTGGAACTACTTCTTCTTCGGCATCTAATGCAATGTCGGAGACGACTGCGGCATTGATACGCAACTCAAGTGATATGGGTTGGGAATTTGCAGAGTTGGCGGATGCTACAAATGTAGATAAGTTAAAGTGTAAGTTGTGTGGAAAACTAGTGAGTGGTGGAATACATCGACTCAAACAACATGTTGCCAACATCAAGGGGAATGTCACCGCATGTAGGAATTCTTCGGATGATCAAAAGGCAAGATGCAAGAAAGCTATTGAGGAAGGAAGAATTAAGAAGAGACAAAAGTATGTGCATGATTTAGAAGTGAGGGAAGAAGTTATCATTGAAGAAGATGAAGATGATAGTGTGAGTGGAGGAAGAAAGCGGCGTAATCTTGGACCTATGGACCGTTATGCATCTGCTATCGACCCTGACTTCTCAATGCATGGAAGTGGGAAGATGAGGCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

153

Amino Acids

16.74

Weight (kDa)

8.68

Isoelectric Point (pI)

52.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 53, 104, 213, 373
AcsI RAATTY 2 cut(s) 89, 223
AfiI CCNNNNNNNGG 1 cut(s) 219
AflIII ACRYGT 1 cut(s) 184
AgsI TTSAA 1 cut(s) 335
AhlI ACTAGT 1 cut(s) 151
AluBI AGCT 1 cut(s) 260
AluI AGCT 1 cut(s) 260
Alw26I GTCTC 2 cut(s) 38, 280
ApoI RAATTY 2 cut(s) 89, 223
Asp700I GAANNNNTTC 1 cut(s) 13
AspS9I GGNCC 2 cut(s) 386, 394
AsuHPI GGTGA 1 cut(s) 202
AvaII GGWCC 2 cut(s) 386, 394
BarI GAAGNNNNNNTAC 2 cut(s) 211, 243
BclI TGATCA 1 cut(s) 235
BcoDI GTCTC 2 cut(s) 38, 280
BcuI ACTAGT 1 cut(s) 151
BfaI CTAG 1 cut(s) 152
BisI GCNGC 2 cut(s) 54, 374
BlsI GCNGC 2 cut(s) 55, 375
Bme18I GGWCC 2 cut(s) 386, 394
BmgT120I GGNCC 2 cut(s) 386, 394
BmsI GCATC 4 cut(s) 35, 97, 239, 413
BpuEI CTTGAG 1 cut(s) 55
Bsc4I CCNNNNNNNGG 1 cut(s) 219
Bse3DI GCAATG 1 cut(s) 42
BseGI GGATG 2 cut(s) 112, 238
BseLI CCNNNNNNNGG 1 cut(s) 219
BseMI GCAATG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 219
BsmAI GTCTC 2 cut(s) 38, 280
BsmBI CGTCTC 1 cut(s) 38
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 4 cut(s) 53, 104, 213, 373
BsrDI GCAATG 1 cut(s) 42
BssMI GATC 1 cut(s) 235
Bst4CI ACNGT 1 cut(s) 398
Bst6I CTCTTC 1 cut(s) 278
BstAPI GCANNNNNTGC 1 cut(s) 32
BstF5I GGATG 2 cut(s) 112, 238
BstKTI GATC 1 cut(s) 238
BstMAI GTCTC 2 cut(s) 38, 280
BstMBI GATC 1 cut(s) 235
BstMWI GCNNNNNNNGC 2 cut(s) 32, 101
BstNSI RCATGY 2 cut(s) 188, 219
BtsCI GGATG 2 cut(s) 112, 238
Cfr13I GGNCC 2 cut(s) 386, 394
CviAII CATG 4 cut(s) 185, 216, 302, 434
CviJI RGCY 2 cut(s) 5, 260
CviKI_1 RGCY 2 cut(s) 5, 260
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
EciI GGCGGA 1 cut(s) 119
Eco47I GGWCC 2 cut(s) 386, 394
EcoRI GAATTC 1 cut(s) 223
EcoT22I ATGCAT 2 cut(s) 406, 435
Esp3I CGTCTC 1 cut(s) 38
FaeI CATG 4 cut(s) 188, 219, 305, 437
FaiI YATR 8 cut(s) 80, 186, 217, 297, 303, 392, 402, 435
FatI CATG 4 cut(s) 184, 215, 301, 433
FbaI TGATCA 1 cut(s) 235
Fnu4HI GCNGC 2 cut(s) 54, 374
FokI GGATG 2 cut(s) 119, 245
Fsp4HI GCNGC 2 cut(s) 54, 374
FspBI CTAG 1 cut(s) 152
GluI GCNGC 2 cut(s) 54, 374
Hin1II CATG 4 cut(s) 188, 219, 305, 437
HinfI GANTC 1 cut(s) 174
HphI GGTGA 1 cut(s) 202
Hpy188I TCNGA 2 cut(s) 43, 232
HpyAV CCTTC 1 cut(s) 263
HpyCH4III ACNGT 1 cut(s) 398
HpyCH4V TGCA 6 cut(s) 35, 95, 252, 301, 404, 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 101
Hsp92II CATG 4 cut(s) 188, 219, 305, 437
Ksp22I TGATCA 1 cut(s) 235
Kzo9I GATC 1 cut(s) 235
LpnPI CCDG 1 cut(s) 432
LweI GCATC 4 cut(s) 35, 97, 239, 413
MaeI CTAG 1 cut(s) 152
MaeIII GTNAC 1 cut(s) 208
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MluCI AATT 3 cut(s) 89, 223, 276
MlyI GAGTC 1 cut(s) 168
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 4 cut(s) 259, 309, 356, 444
Mph1103I ATGCAT 2 cut(s) 406, 435
MroXI GAANNNNTTC 1 cut(s) 13
MseI TTAA 2 cut(s) 128, 279
MslI CAYNNNNRTG 1 cut(s) 438
MwoI GCNNNNNNNGC 2 cut(s) 32, 101
NdeII GATC 1 cut(s) 235
NlaIII CATG 4 cut(s) 188, 219, 305, 437
NmuCI GTSAC 1 cut(s) 208
NsiI ATGCAT 2 cut(s) 406, 435
NspI RCATGY 2 cut(s) 188, 219
PciI ACATGT 1 cut(s) 184
PdmI GAANNNNTTC 1 cut(s) 13
PkrI GCNGC 2 cut(s) 55, 375
PleI GAGTC 1 cut(s) 168
PpsI GAGTC 1 cut(s) 168
PscI ACATGT 1 cut(s) 184
PspPI GGNCC 2 cut(s) 386, 394
RseI CAYNNNNRTG 1 cut(s) 438
SaqAI TTAA 2 cut(s) 128, 279
SatI GCNGC 2 cut(s) 54, 374
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 2 cut(s) 386, 394
SchI GAGTC 1 cut(s) 168
SetI ASST 2 cut(s) 262, 391
SfaNI GCATC 4 cut(s) 35, 97, 239, 413
SinI GGWCC 2 cut(s) 386, 394
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 1 cut(s) 70
SmoI CTYRAG 1 cut(s) 70
SpeI ACTAGT 1 cut(s) 151
Sse9I AATT 3 cut(s) 89, 223, 276
SsiI CCGC 4 cut(s) 53, 104, 213, 373
SspMI CTAG 1 cut(s) 152
TaaI ACNGT 1 cut(s) 398
TaqI TCGA 2 cut(s) 172, 414
TasI AATT 3 cut(s) 89, 223, 276
TauI GCSGC 2 cut(s) 56, 376
Tru1I TTAA 2 cut(s) 128, 279
Tru9I TTAA 2 cut(s) 128, 279
TseFI GTSAC 1 cut(s) 208
Tsp45I GTSAC 1 cut(s) 208
TspDTI ATGAA 1 cut(s) 357
VpaK11BI GGWCC 2 cut(s) 386, 394
XapI RAATTY 2 cut(s) 89, 223
XceI RCATGY 2 cut(s) 188, 219
XmnI GAANNNNTTC 1 cut(s) 13
XspI CTAG 1 cut(s) 152
Zsp2I ATGCAT 2 cut(s) 406, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.