Rroxscaffold_7G00195870

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000698
Physical Location & Seq
Forward (+)
38464588 .. 38465898
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00195870.1

Sequence Viewer

Length: 861 bp
ATGGAGAAGAAGAGTGAGTTGAGGTGTATGGTTGCTTGTGATGATTGGACCGCTTGCAAGCATTCTAAGAGTGTTAAGGGGAAAATGGCATATAATACCGTATTGAGCACCTCTTTTTGGAATGGGGTAACACTTTGCTTGAAAGTGTTTGCTCCTTTGTTTAAGGTGCTTCGTCTTGTGGATGGGGATAAGGCATTCAAACATCAAGAGGCCAATTATCGGCCAATTATAGAGATTATTGATGAGAAAGCCCGTGGTCATCTTGATAGTCCATTACATTTGGCGGCTTACCTCTTGAACCCCTATTACTTCTACAAGGATGAAGACATTCAATATGATCATGTTGTCATGGAAGGGTTCTTTCTTTGTGTGGAGAAGTTTTTTCCCGATGACCTTGAGACCCAAAGTGTGGTGACAAATGAAGAATTGTTGATGTATAAAAGCAAAGGGGGTGGATTTGGAAGAGCATTAGCTAAGTTGGGATGTGCAAAGAATGATGACAAGTATGATCCGGTTTATGTCCAATTCAATGCCAAGATTATTAACAAAAAGAGAAGGGCTCAAGAGTTGGGTGTGGATGTGCTACTTGGTAATGAAGATAGCAAGGCTCAAGGGTGGATTGTGGATGGTGGTGATGAAGAAGATGACTCGGATATTATTAGTGAAATAGAGGGAGAGTCTTCGGGAGTGGATAGTGGGCTTAGGAGAAGTTCTAGAAATGTAGAGATAAGAGAGCTTCATGATGAAGATTTTGTATCGGATGAGGACACGGAAGAGGAGGGAGAAGAAGAGGATGTTGAGTTTGAGTTCGACACCGAAGGAGTCTTGGATGGATATGGAGAGGAAGAGTTAGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

286

Amino Acids

32.51

Weight (kDa)

4.47

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 409
AciI CCGC 2 cut(s) 51, 284
AclWI GGATC 1 cut(s) 503
AcoI YGGCCR 1 cut(s) 221
AfiI CCNNNNNNNGG 3 cut(s) 117, 219, 409
AgsI TTSAA 5 cut(s) 142, 199, 298, 332, 529
AluBI AGCT 2 cut(s) 473, 736
AluI AGCT 2 cut(s) 473, 736
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 392
AlwI GGATC 1 cut(s) 503
AoxI GGCC 2 cut(s) 210, 221
Asp700I GAANNNNTTC 1 cut(s) 327
AspS9I GGNCC 1 cut(s) 48
AsuHPI GGTGA 2 cut(s) 424, 644
AvaII GGWCC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 562
BbsI GAAGAC 2 cut(s) 330, 672
Bbv12I GWGCWC 1 cut(s) 110
BccI CCATC 3 cut(s) 176, 620, 824
BclI TGATCA 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 392
BfaI CTAG 1 cut(s) 714
BisI GCNGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 286
Bme18I GGWCC 1 cut(s) 48
BmgT120I GGNCC 1 cut(s) 48
BpiI GAAGAC 2 cut(s) 330, 672
BplI GAGNNNNNCTC 2 cut(s) 544, 576
Bpu10I CCTNAGC 1 cut(s) 701
BpuEI CTTGAG 3 cut(s) 416, 546, 594
BsaI GGTCTC 1 cut(s) 392
BsaJI CCNNGG 1 cut(s) 253
BsaWI WCCGGW 1 cut(s) 511
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 219, 409
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 8 cut(s) 187, 325, 488, 583, 631, 766, 799, 835
BseLI CCNNNNNNNGG 3 cut(s) 117, 219, 409
BseRI GAGGAG 1 cut(s) 791
BshFI GGCC 2 cut(s) 212, 223
BsiHKAI GWGCWC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 512
BslI CCNNNNNNNGG 3 cut(s) 117, 219, 409
BsmAI GTCTC 1 cut(s) 392
BsmI GAATGC 2 cut(s) 61, 194
BsnI GGCC 2 cut(s) 212, 223
Bso31I GGTCTC 1 cut(s) 392
Bsp1286I GDGCHC 2 cut(s) 110, 562
Bsp143I GATC 2 cut(s) 337, 508
BspACI CCGC 2 cut(s) 51, 284
BspANI GGCC 2 cut(s) 212, 223
BspHI TCATGA 1 cut(s) 739
BspPI GGATC 1 cut(s) 503
BspQI GCTCTTC 1 cut(s) 457
BspTNI GGTCTC 1 cut(s) 392
BssECI CCNNGG 1 cut(s) 253
BssMI GATC 2 cut(s) 337, 508
Bst4CI ACNGT 1 cut(s) 100
Bst6I CTCTTC 5 cut(s) 5, 457, 768, 783, 840
BstC8I GCNNGC 2 cut(s) 55, 59
BstDEI CTNAG 3 cut(s) 66, 474, 701
BstDSI CCRYGG 1 cut(s) 253
BstF5I GGATG 8 cut(s) 187, 325, 488, 583, 631, 766, 799, 835
BstKTI GATC 2 cut(s) 340, 511
BstMAI GTCTC 1 cut(s) 392
BstMBI GATC 2 cut(s) 337, 508
BstV2I GAAGAC 2 cut(s) 330, 672
BsuRI GGCC 2 cut(s) 212, 223
BtgI CCRYGG 1 cut(s) 253
BtsCI GGATG 8 cut(s) 187, 325, 488, 583, 631, 766, 799, 835
Cac8I GCNNGC 2 cut(s) 55, 59
CciI TCATGA 1 cut(s) 739
Cfr13I GGNCC 1 cut(s) 48
CspCI CAANNNNNGTGG 2 cut(s) 433, 468
CviAII CATG 3 cut(s) 341, 349, 740
CviJI RGCY 9 cut(s) 212, 223, 251, 287, 473, 560, 608, 700, 736
CviKI_1 RGCY 9 cut(s) 212, 223, 251, 287, 473, 560, 608, 700, 736
DdeI CTNAG 3 cut(s) 66, 474, 701
DpnI GATC 2 cut(s) 339, 510
DpnII GATC 2 cut(s) 337, 508
EaeI YGGCCR 1 cut(s) 221
Eam1104I CTCTTC 5 cut(s) 5, 457, 768, 783, 840
EarI CTCTTC 5 cut(s) 5, 457, 768, 783, 840
Eco24I GRGCYC 1 cut(s) 562
Eco31I GGTCTC 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 562
FaeI CATG 3 cut(s) 344, 352, 743
FatI CATG 3 cut(s) 340, 348, 739
FbaI TGATCA 1 cut(s) 337
Fnu4HI GCNGC 1 cut(s) 285
FokI GGATG 8 cut(s) 194, 332, 495, 590, 638, 773, 806, 842
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 1 cut(s) 285
FspBI CTAG 1 cut(s) 714
GluI GCNGC 1 cut(s) 285
HaeIII GGCC 2 cut(s) 212, 223
HapII CCGG 1 cut(s) 512
Hin1II CATG 3 cut(s) 344, 352, 743
HinfI GANTC 3 cut(s) 647, 677, 822
HpaII CCGG 1 cut(s) 512
HphI GGTGA 2 cut(s) 424, 644
Hpy188I TCNGA 2 cut(s) 652, 760
Hpy188III TCNNGA 8 cut(s) 206, 263, 295, 386, 563, 684, 714, 740
HpyAV CCTTC 3 cut(s) 347, 549, 812
HpyCH4III ACNGT 1 cut(s) 100
HpyCH4V TGCA 2 cut(s) 57, 488
HpyF3I CTNAG 3 cut(s) 66, 474, 701
Hsp92II CATG 3 cut(s) 344, 352, 743
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 2 cut(s) 337, 508
LguI GCTCTTC 1 cut(s) 457
LmnI GCTCC 1 cut(s) 157
LpnPI CCDG 1 cut(s) 525
MaeI CTAG 1 cut(s) 714
MaeIII GTNAC 2 cut(s) 127, 412
MalI GATC 2 cut(s) 339, 510
MboI GATC 2 cut(s) 337, 508
MhlI GDGCHC 2 cut(s) 110, 562
MluCI AATT 4 cut(s) 214, 225, 425, 524
MlyI GAGTC 3 cut(s) 641, 686, 831
MroXI GAANNNNTTC 1 cut(s) 327
MseI TTAA 3 cut(s) 75, 162, 543
MspI CCGG 1 cut(s) 512
Mva1269I GAATGC 2 cut(s) 61, 194
NdeII GATC 2 cut(s) 337, 508
NlaIII CATG 3 cut(s) 344, 352, 743
NmuCI GTSAC 1 cut(s) 412
PagI TCATGA 1 cut(s) 739
PciSI GCTCTTC 1 cut(s) 457
PctI GAATGC 2 cut(s) 61, 194
PdmI GAANNNNTTC 1 cut(s) 327
PflMI CCANNNNNTGG 1 cut(s) 409
PkrI GCNGC 1 cut(s) 286
PleI GAGTC 3 cut(s) 641, 685, 830
PpsI GAGTC 3 cut(s) 641, 685, 830
PspPI GGNCC 1 cut(s) 48
PsrI GAACNNNNNNTAC 2 cut(s) 290, 322
SapI GCTCTTC 1 cut(s) 457
SaqAI TTAA 3 cut(s) 75, 162, 543
SatI GCNGC 1 cut(s) 285
Sau3AI GATC 2 cut(s) 337, 508
Sau96I GGNCC 1 cut(s) 48
SchI GAGTC 3 cut(s) 641, 686, 831
SduI GDGCHC 2 cut(s) 110, 562
SetI ASST 7 cut(s) 26, 113, 168, 294, 396, 475, 738
SinI GGWCC 1 cut(s) 48
SmlI CTYRAG 3 cut(s) 395, 561, 609
SmoI CTYRAG 3 cut(s) 395, 561, 609
Sse9I AATT 4 cut(s) 214, 225, 425, 524
SsiI CCGC 2 cut(s) 51, 284
SspMI CTAG 1 cut(s) 714
TaaI ACNGT 1 cut(s) 100
TaqI TCGA 1 cut(s) 810
TasI AATT 4 cut(s) 214, 225, 425, 524
TauI GCSGC 1 cut(s) 287
Tru1I TTAA 3 cut(s) 75, 162, 543
Tru9I TTAA 3 cut(s) 75, 162, 543
TseFI GTSAC 1 cut(s) 412
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 6 cut(s) 336, 435, 609, 651, 728, 759
TspGWI ACGGA 1 cut(s) 785
Van91I CCANNNNNTGG 1 cut(s) 409
VpaK11BI GGWCC 1 cut(s) 48
XbaI TCTAGA 1 cut(s) 713
XmnI GAANNNNTTC 1 cut(s) 327
XspI CTAG 1 cut(s) 714
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.