Rmu_sc0001208.1_g000044

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001208.1
OG0000698
Physical Location & Seq
Reverse (-)
179189 .. 179485
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001208.1_g000044.1.cds

Sequence Viewer

Length: 297 bp
atgaatagactagatgcttcaaggttgaacaatttagtctatgtccaattcaatgctaagatcatcaacaaaaagagaagggagaaagagttggaagtagatgtgctacttggtaatgaagcttgtaagactcaaggatggattgttgatggtagtgatggagaagatgagtcatatattactaatgaaatggagggagaggcttcgggagtaaatagtgagcctaggagaagttctagaaatgtggaggtaagagaacttcatgatgaagattttgtatcagatgaggacacataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

98

Amino Acids

11.21

Weight (kDa)

4.5

Isoelectric Point (pI)

42.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 3 cut(s) 21, 28, 52
AluBI AGCT 1 cut(s) 122
AluI AGCT 1 cut(s) 122
AspA2I CCTAGG 1 cut(s) 224
AvrII CCTAGG 1 cut(s) 224
BarI GAAGNNNNNNTAC 2 cut(s) 243, 275
BccI CCATC 3 cut(s) 132, 143, 152
BfaI CTAG 3 cut(s) 11, 225, 237
BlnI CCTAGG 1 cut(s) 224
BmsI GCATC 1 cut(s) 4
BpuEI CTTGAG 1 cut(s) 117
BsaJI CCNNGG 1 cut(s) 224
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
BseDI CCNNGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 143
Bsp143I GATC 1 cut(s) 60
BspHI TCATGA 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 224
BssMI GATC 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 57
BstF5I GGATG 1 cut(s) 143
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BtsCI GGATG 1 cut(s) 143
CciI TCATGA 1 cut(s) 262
CviAII CATG 1 cut(s) 263
CviJI RGCY 3 cut(s) 122, 203, 223
CviKI_1 RGCY 3 cut(s) 122, 203, 223
DdeI CTNAG 1 cut(s) 57
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 224
EcoT14I CCWWGG 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 224
FaeI CATG 1 cut(s) 266
FaiI YATR 5 cut(s) 42, 175, 177, 264, 295
FatI CATG 1 cut(s) 262
FokI GGATG 1 cut(s) 150
FspBI CTAG 3 cut(s) 11, 225, 237
Hin1II CATG 1 cut(s) 266
HindIII AAGCTT 1 cut(s) 120
HinfI GANTC 2 cut(s) 130, 170
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 3 cut(s) 207, 237, 263
HpyAV CCTTC 1 cut(s) 72
HpyF3I CTNAG 1 cut(s) 57
Hsp92II CATG 1 cut(s) 266
Kzo9I GATC 1 cut(s) 60
LweI GCATC 1 cut(s) 4
MaeI CTAG 3 cut(s) 11, 225, 237
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 2 cut(s) 176, 281
MluCI AATT 2 cut(s) 31, 47
MlyI GAGTC 2 cut(s) 124, 179
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 4 cut(s) 187, 193, 241, 280
NdeII GATC 1 cut(s) 60
NlaIII CATG 1 cut(s) 266
PagI TCATGA 1 cut(s) 262
PleI GAGTC 2 cut(s) 124, 178
PpsI GAGTC 2 cut(s) 124, 178
Sau3AI GATC 1 cut(s) 60
SchI GAGTC 2 cut(s) 124, 179
SetI ASST 3 cut(s) 26, 124, 252
SfaNI GCATC 1 cut(s) 4
SgeI CNNG 9 cut(s) 23, 33, 122, 135, 146, 219, 237, 249, 275
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 2 cut(s) 31, 47
SspMI CTAG 3 cut(s) 11, 225, 237
StyI CCWWGG 1 cut(s) 224
TasI AATT 2 cut(s) 31, 47
TspDTI ATGAA 5 cut(s) 17, 132, 201, 251, 282
XbaI TCTAGA 1 cut(s) 236
XmaJI CCTAGG 1 cut(s) 224
XspI CTAG 3 cut(s) 11, 225, 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.