RchiOBHm_Chr5g0033441

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000698
Physical Location & Seq
Forward (+)
27270569 .. 27271466
898 bp
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UTR
Exon/CDS
Intron
PRQ31253

Sequence Viewer

Length: 201 bp
ATGACTGGATTGACTGCAATCCTGAGATTGTTCAGCTGCACAATGAGTTCTAGTACTAGTGGGACAACAAAGAAAGATCATGCTTGGCGATGGACTAAACCAATTCCGGGAGAGTTGAAGTACTTTTTGGTGATTTTGTTGATTTATTATAGGTTTGGTGATTTTGTTGAATCATATGGTTTTAGTACTTGCTTATTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

66

Amino Acids

7.56

Weight (kDa)

9.1

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 55, 122, 187
AfiI CCNNNNNNNGG 1 cut(s) 107
AgsI TTSAA 2 cut(s) 118, 170
AhlI ACTAGT 1 cut(s) 56
AjuI GAANNNNNNNTTGG 2 cut(s) 110, 142
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
ApeKI GCWGC 1 cut(s) 36
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 2 cut(s) 142, 170
BbvI GCAGC 1 cut(s) 23
BccI CCATC 1 cut(s) 84
BcnI CCSGG 1 cut(s) 108
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 2 cut(s) 51, 57
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
BmcAI AGTACT 3 cut(s) 55, 122, 187
Bme1390I CCNGG 1 cut(s) 108
BmrFI CCNGG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 107
Bse1I ACTGG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 107
BseMII CTCAG 1 cut(s) 14
BseNI ACTGG 1 cut(s) 10
BseXI GCAGC 1 cut(s) 23
BsgI GTGCAG 1 cut(s) 22
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 107
BsmFI GGGAC 1 cut(s) 76
Bsp143I GATC 1 cut(s) 76
BspCNI CTCAG 1 cut(s) 15
BsrI ACTGG 1 cut(s) 10
BssMI GATC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 23
BstKTI GATC 1 cut(s) 79
BstMBI GATC 1 cut(s) 76
BstSCI CCNGG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 23
BtgZI GCGATG 1 cut(s) 103
Csp6I GTAC 3 cut(s) 54, 121, 186
CviAII CATG 1 cut(s) 80
CviJI RGCY 1 cut(s) 36
CviKI_1 RGCY 1 cut(s) 36
CviQI GTAC 3 cut(s) 54, 121, 186
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
FaeI CATG 1 cut(s) 83
FaiI YATR 5 cut(s) 81, 150, 175, 177, 199
FaqI GGGAC 1 cut(s) 76
FatI CATG 1 cut(s) 79
FauNDI CATATG 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 37
Fsp4HI GCNGC 1 cut(s) 37
FspBI CTAG 2 cut(s) 51, 57
GluI GCNGC 1 cut(s) 37
HapII CCGG 1 cut(s) 107
Hin1II CATG 1 cut(s) 83
HinfI GANTC 1 cut(s) 170
HpaII CCGG 1 cut(s) 107
HphI GGTGA 2 cut(s) 142, 170
Hpy188III TCNNGA 1 cut(s) 22
HpyCH4V TGCA 2 cut(s) 17, 39
HpyF3I CTNAG 1 cut(s) 23
Hsp92II CATG 1 cut(s) 83
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 2 cut(s) 35, 120
Lsp1109I GCAGC 1 cut(s) 23
MaeI CTAG 2 cut(s) 51, 57
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MluCI AATT 1 cut(s) 102
MspA1I CMGCKG 1 cut(s) 36
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 108
NciI CCSGG 1 cut(s) 108
NdeI CATATG 1 cut(s) 175
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 83
PfeI GAWTC 1 cut(s) 170
PfoI TCCNGGA 1 cut(s) 106
PkrI GCNGC 1 cut(s) 38
PvuII CAGCTG 1 cut(s) 36
RsaI GTAC 3 cut(s) 55, 122, 187
RsaNI GTAC 3 cut(s) 54, 121, 186
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 1 cut(s) 76
ScaI AGTACT 3 cut(s) 55, 122, 187
ScrFI CCNGG 1 cut(s) 108
SetI ASST 2 cut(s) 38, 155
SgeI CNNG 8 cut(s) 18, 34, 63, 69, 92, 96, 119, 120
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 1 cut(s) 102
SspMI CTAG 2 cut(s) 51, 57
StyD4I CCNGG 1 cut(s) 106
TasI AATT 1 cut(s) 102
TatI WGTACW 3 cut(s) 53, 120, 185
TfiI GAWTC 1 cut(s) 170
TseI GCWGC 1 cut(s) 36
XspI CTAG 2 cut(s) 51, 57
ZrmI AGTACT 3 cut(s) 55, 122, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.