pycom10g13140

source UniProtKB

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
16629123 .. 16629529
407 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g13140.1

Sequence Viewer

Length: 360 bp
ATGCTTCAGATGATGTGGGATGGGAATATGGGGTGTTGGCGGATCCTTCAAACTCGGATAAGAATGAAACAACACATAGCCCATGTCAAGGGCAATGTAGCTGGATACACAAAGTATTCAAATGAAGATAAAGCAAAATGTAAAGCCACATTAGAAAAAGCAAAAAAGAAGAAGAAAGAAAGAAACAAGCACTATGAGGAAGTGAAGGAAGAGGTTCAACTTCCACATATTGAAGAAGATGAAGATATTGAAGTTGTTGGGTCAAGGGAAATGTCACAAACTCTTAGGCCTATTGATAGGTTTGCATCCTCCATCAATCCTGGTTCTTCAAAATCAAATGATGGAAGCAAGAGTAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

120

Amino Acids

13.75

Weight (kDa)

9.34

Isoelectric Point (pI)

62.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 40
AclWI GGATC 2 cut(s) 37, 50
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 6 cut(s) 50, 120, 218, 233, 251, 330
AjnI CCWGG 1 cut(s) 319
AluBI AGCT 1 cut(s) 101
AluI AGCT 1 cut(s) 101
AlwI GGATC 2 cut(s) 37, 50
AoxI GGCC 1 cut(s) 287
Asp700I GAANNNNTTC 1 cut(s) 213
BamHI GGATCC 1 cut(s) 42
BccI CCATC 3 cut(s) 14, 320, 335
BciT130I CCWGG 1 cut(s) 321
BciVI GTATCC 1 cut(s) 98
BfuI GTATCC 1 cut(s) 98
Bme1390I CCNGG 1 cut(s) 321
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 321
BmsI GCATC 1 cut(s) 314
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 321
BseGI GGATG 2 cut(s) 25, 305
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMI GCAATG 1 cut(s) 100
BshFI GGCC 1 cut(s) 289
BslI CCNNNNNNNGG 1 cut(s) 88
BsnI GGCC 1 cut(s) 289
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 1 cut(s) 40
BspANI GGCC 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 44
BspPI GGATC 2 cut(s) 37, 50
BsrDI GCAATG 1 cut(s) 100
BssMI GATC 1 cut(s) 42
Bst2UI CCWGG 1 cut(s) 321
Bst6I CTCTTC 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 284
BstF5I GGATG 2 cut(s) 25, 305
BstKTI GATC 1 cut(s) 45
BstMBI GATC 1 cut(s) 42
BstNI CCWGG 1 cut(s) 321
BstSCI CCNGG 1 cut(s) 319
BstX2I RGATCY 1 cut(s) 42
BstYI RGATCY 1 cut(s) 42
BsuI GTATCC 1 cut(s) 98
BsuRI GGCC 1 cut(s) 289
BtsCI GGATG 2 cut(s) 25, 305
CviAII CATG 1 cut(s) 83
CviJI RGCY 4 cut(s) 80, 101, 146, 289
CviKI_1 RGCY 4 cut(s) 80, 101, 146, 289
DdeI CTNAG 1 cut(s) 284
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 204
EarI CTCTTC 1 cut(s) 204
EciI GGCGGA 1 cut(s) 55
Eco147I AGGCCT 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 319
FaeI CATG 1 cut(s) 86
FaiI YATR 5 cut(s) 29, 77, 84, 195, 228
FatI CATG 1 cut(s) 82
FokI GGATG 2 cut(s) 32, 292
HaeIII GGCC 1 cut(s) 289
Hin1II CATG 1 cut(s) 86
Hpy188I TCNGA 2 cut(s) 9, 57
HpyAV CCTTC 2 cut(s) 56, 199
HpyCH4V TGCA 1 cut(s) 305
HpyF3I CTNAG 1 cut(s) 284
Hsp92II CATG 1 cut(s) 86
Kzo9I GATC 1 cut(s) 42
LpnPI CCDG 3 cut(s) 87, 306, 333
LweI GCATC 1 cut(s) 314
MaeIII GTNAC 1 cut(s) 273
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MboII GAAGA 8 cut(s) 137, 181, 184, 221, 245, 248, 254, 318
MflI RGATCY 1 cut(s) 42
MnlI CCTC 3 cut(s) 190, 205, 319
MroXI GAANNNNTTC 1 cut(s) 213
MspR9I CCNGG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 321
NdeII GATC 1 cut(s) 42
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 44
NmuCI GTSAC 1 cut(s) 273
PceI AGGCCT 1 cut(s) 289
PdmI GAANNNNTTC 1 cut(s) 213
Psp6I CCWGG 1 cut(s) 319
PspGI CCWGG 1 cut(s) 319
PspN4I GGNNCC 1 cut(s) 44
PsuI RGATCY 1 cut(s) 42
Sau3AI GATC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 321
SetI ASST 3 cut(s) 103, 216, 302
SfaNI GCATC 1 cut(s) 314
SgeI CNNG 8 cut(s) 66, 95, 100, 114, 199, 276, 332, 333
SseBI AGGCCT 1 cut(s) 289
SsiI CCGC 1 cut(s) 40
StuI AGGCCT 1 cut(s) 289
StyD4I CCNGG 1 cut(s) 319
TseFI GTSAC 1 cut(s) 273
Tsp45I GTSAC 1 cut(s) 273
TspDTI ATGAA 3 cut(s) 80, 138, 255
XmnI GAANNNNTTC 1 cut(s) 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.