Rmu_sc0004180.1_g000008

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004180.1
OG0000698
Physical Location & Seq
Forward (+)
69634 .. 70611
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004180.1_g000008.1.cds

Sequence Viewer

Length: 504 bp
atgggctttttgtatggagaattactcaaggcaaaggaaaacattaaagaggcattcaaacatcaagagaccaattatcggccaattatagagattattgatgagaaagcccgtggtcgtcttgatagtccattacatttggctgcttacctcttgaacccctattacttctacaaggatgaaaacattcaatatgatcatgttgtcatggaagggttctttctttgtgtggagaagttctttcccgatgaccttgagacccaaagtgtggtgacaaatgaagaattgttgttgtacaagagcaaagggggtggatttggaagagcattagctatgttgggatgtgcaaagaatgatgacaagtatgatccggatgtgctacttggtaatgaagctagcaaggcccaagggtggattgtggatggtggtgataaagaagatgactcggatattattagtgaaatggagggagagtcttcgggagtggatagtgggctagcttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

167

Amino Acids

18.75

Weight (kDa)

4.45

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 268
AccIII TCCGGA 1 cut(s) 370
AclWI GGATC 1 cut(s) 362
AcoI YGGCCR 1 cut(s) 80
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 3 cut(s) 78, 268, 411
AgsI TTSAA 3 cut(s) 58, 157, 191
AluBI AGCT 3 cut(s) 332, 395, 500
AluI AGCT 3 cut(s) 332, 395, 500
Alw26I GTCTC 2 cut(s) 62, 251
AlwI GGATC 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 370
AoxI GGCC 2 cut(s) 80, 402
ApeKI GCWGC 1 cut(s) 143
Asp700I GAANNNNTTC 1 cut(s) 186
AspS9I GGNCC 1 cut(s) 403
AsuHPI GGTGA 2 cut(s) 283, 440
AsuNHI GCTAGC 2 cut(s) 395, 496
BbsI GAAGAC 1 cut(s) 468
BbvI GCAGC 1 cut(s) 130
BccI CCATC 1 cut(s) 416
BclI TGATCA 1 cut(s) 196
BcoDI GTCTC 2 cut(s) 62, 251
BfaI CTAG 2 cut(s) 396, 497
BisI GCNGC 1 cut(s) 144
BlsI GCNGC 1 cut(s) 145
BmgT120I GGNCC 1 cut(s) 403
BmtI GCTAGC 2 cut(s) 399, 500
BpiI GAAGAC 1 cut(s) 468
BplI GAGNNNNNCTC 2 cut(s) 9, 41
BpuEI CTTGAG 2 cut(s) 11, 275
BsaI GGTCTC 2 cut(s) 62, 251
BsaJI CCNNGG 2 cut(s) 112, 406
BsaWI WCCGGW 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 3 cut(s) 78, 268, 411
BseAI TCCGGA 1 cut(s) 370
BseDI CCNNGG 2 cut(s) 112, 406
BseGI GGATG 4 cut(s) 184, 347, 379, 427
BseLI CCNNNNNNNGG 3 cut(s) 78, 268, 411
BseXI GCAGC 1 cut(s) 130
BshFI GGCC 2 cut(s) 82, 404
BsiSI CCGG 1 cut(s) 371
BslI CCNNNNNNNGG 3 cut(s) 78, 268, 411
BsmAI GTCTC 2 cut(s) 62, 251
BsmI GAATGC 1 cut(s) 53
BsnI GGCC 2 cut(s) 82, 404
Bso31I GGTCTC 2 cut(s) 62, 251
Bsp13I TCCGGA 1 cut(s) 370
Bsp1407I TGTACA 1 cut(s) 294
Bsp143I GATC 2 cut(s) 196, 367
BspANI GGCC 2 cut(s) 82, 404
BspEI TCCGGA 1 cut(s) 370
BspOI GCTAGC 2 cut(s) 399, 500
BspPI GGATC 1 cut(s) 362
BspQI GCTCTTC 1 cut(s) 316
BspTNI GGTCTC 2 cut(s) 62, 251
BsrGI TGTACA 1 cut(s) 294
BssECI CCNNGG 2 cut(s) 112, 406
BssMI GATC 2 cut(s) 196, 367
BssT1I CCWWGG 1 cut(s) 406
Bst6I CTCTTC 1 cut(s) 316
BstAUI TGTACA 1 cut(s) 294
BstC8I GCNNGC 2 cut(s) 397, 498
BstDEI CTNAG 1 cut(s) 501
BstDSI CCRYGG 1 cut(s) 112
BstF5I GGATG 4 cut(s) 184, 347, 379, 427
BstKTI GATC 2 cut(s) 199, 370
BstMAI GTCTC 2 cut(s) 62, 251
BstMBI GATC 2 cut(s) 196, 367
BstMWI GCNNNNNNNGC 1 cut(s) 401
BstV1I GCAGC 1 cut(s) 130
BstV2I GAAGAC 1 cut(s) 468
BsuRI GGCC 2 cut(s) 82, 404
BtgI CCRYGG 1 cut(s) 112
BtsCI GGATG 4 cut(s) 184, 347, 379, 427
Cac8I GCNNGC 2 cut(s) 397, 498
Cfr13I GGNCC 1 cut(s) 403
Csp6I GTAC 1 cut(s) 295
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 2 cut(s) 200, 208
CviJI RGCY 9 cut(s) 6, 82, 110, 143, 332, 395, 404, 496, 500
CviKI_1 RGCY 9 cut(s) 6, 82, 110, 143, 332, 395, 404, 496, 500
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 1 cut(s) 501
DpnI GATC 2 cut(s) 198, 369
DpnII GATC 2 cut(s) 196, 367
EaeI YGGCCR 1 cut(s) 80
Eam1104I CTCTTC 1 cut(s) 316
EarI CTCTTC 1 cut(s) 316
Eco130I CCWWGG 1 cut(s) 406
Eco31I GGTCTC 2 cut(s) 62, 251
EcoT14I CCWWGG 1 cut(s) 406
ErhI CCWWGG 1 cut(s) 406
FaeI CATG 2 cut(s) 203, 211
FaiI YATR 7 cut(s) 15, 89, 195, 201, 209, 335, 366
FatI CATG 2 cut(s) 199, 207
FbaI TGATCA 1 cut(s) 196
Fnu4HI GCNGC 1 cut(s) 144
FokI GGATG 4 cut(s) 191, 354, 386, 434
Fsp4HI GCNGC 1 cut(s) 144
FspBI CTAG 2 cut(s) 396, 497
GluI GCNGC 1 cut(s) 144
HaeIII GGCC 2 cut(s) 82, 404
HapII CCGG 1 cut(s) 371
Hin1II CATG 2 cut(s) 203, 211
HinfI GANTC 2 cut(s) 443, 473
HpaII CCGG 1 cut(s) 371
HphI GGTGA 2 cut(s) 283, 440
Hpy188I TCNGA 1 cut(s) 448
Hpy188III TCNNGA 6 cut(s) 65, 122, 154, 245, 371, 480
HpyAV CCTTC 1 cut(s) 206
HpyCH4V TGCA 1 cut(s) 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 401
HpyF3I CTNAG 1 cut(s) 501
Hsp92II CATG 2 cut(s) 203, 211
Kpn2I TCCGGA 1 cut(s) 370
Ksp22I TGATCA 1 cut(s) 196
Kzo9I GATC 2 cut(s) 196, 367
LguI GCTCTTC 1 cut(s) 316
LpnPI CCDG 1 cut(s) 384
Lsp1109I GCAGC 1 cut(s) 130
MaeI CTAG 2 cut(s) 396, 497
MaeIII GTNAC 1 cut(s) 271
MalI GATC 2 cut(s) 198, 369
MboI GATC 2 cut(s) 196, 367
MboII GAAGA 4 cut(s) 293, 333, 449, 468
MluCI AATT 4 cut(s) 20, 73, 84, 284
MlyI GAGTC 2 cut(s) 437, 482
MnlI CCTC 3 cut(s) 43, 161, 460
MroI TCCGGA 1 cut(s) 370
MroXI GAANNNNTTC 1 cut(s) 186
MseI TTAA 1 cut(s) 45
MspI CCGG 1 cut(s) 371
Mva1269I GAATGC 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 401
NdeII GATC 2 cut(s) 196, 367
NheI GCTAGC 2 cut(s) 395, 496
NlaIII CATG 2 cut(s) 203, 211
NmuCI GTSAC 1 cut(s) 271
PciSI GCTCTTC 1 cut(s) 316
PctI GAATGC 1 cut(s) 53
PdmI GAANNNNTTC 1 cut(s) 186
PflMI CCANNNNNTGG 1 cut(s) 268
PkrI GCNGC 1 cut(s) 145
PleI GAGTC 2 cut(s) 437, 481
PpsI GAGTC 2 cut(s) 437, 481
PspPI GGNCC 1 cut(s) 403
PsrI GAACNNNNNNTAC 2 cut(s) 149, 181
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SapI GCTCTTC 1 cut(s) 316
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 1 cut(s) 144
Sau3AI GATC 2 cut(s) 196, 367
Sau96I GGNCC 1 cut(s) 403
SchI GAGTC 2 cut(s) 437, 482
SetI ASST 5 cut(s) 153, 255, 334, 397, 502
SmlI CTYRAG 2 cut(s) 26, 254
SmoI CTYRAG 2 cut(s) 26, 254
Sse9I AATT 4 cut(s) 20, 73, 84, 284
SspMI CTAG 2 cut(s) 396, 497
StyI CCWWGG 1 cut(s) 406
TasI AATT 4 cut(s) 20, 73, 84, 284
TatI WGTACW 1 cut(s) 294
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseFI GTSAC 1 cut(s) 271
TseI GCWGC 1 cut(s) 143
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 3 cut(s) 195, 294, 405
Van91I CCANNNNNTGG 1 cut(s) 268
XmnI GAANNNNTTC 1 cut(s) 186
XspI CTAG 2 cut(s) 396, 497
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.