RchiOBHm_Chr1g0314441

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000698
Physical Location & Seq
Forward (+)
1702068 .. 1704533
2466 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54505

Sequence Viewer

Length: 1332 bp
ATGGCGGGTACTACATCTTCCTCGGCATCTAATGCAATGTCGGAGATGGGTTCATCATTGAAGCATGGTTCAGGTGATATTGGATGGGAATATGCGGAGTTGGCGGATGCTTCAAACTTGGATAGGTTGAAGTGTAAGTTGTGTGGGAAATTAGTGAGTGGTGGGATATATCGAATAAAACAACATATTGCCCACATCAAGGGAAATGTGGCTGCTTGTAAAAAGTCTTCGGATGAGGATAAAGCCAAATGCAAGAATGCTATTGAAGAGGCAAAGTCTAAGAAGAAACAAAAGAGTAGACATGAAGCAGAAATTAGGCAAGAAGTCATTGTTGAAGGAGATGAAGACAATGAAGCGAGTCAAGGGACAAGAAGAATGCCGCATACTCTTGGGCCTATGGACCGTTTTGCATCCCCCATCGATCCGGATTCTTCATTGGATGGAAGTAGGAAGATGAGGCAACAAAATATCAATGATGCACTTTTCAAGCAAAGAACACATAGTGTGCATCAATACTTGGCTAGATGGGTGTATGAAGCCGGGATTCCTTTTCATGCTATTGATAGTGATAGCTTCAAGAGGTTTGTCGAAGCGGTTGGTCAATTTGGCCCGGGTTACCGACCTCCAAGCCAATATCAATTAAGGGAGCCACTATTGAAGGAAGAGGTAGATAGAACTAAAAGTTCATTGAAGAAGCAAGAAGAAGAGTGGGATTTGAATGGTTGCTCTATTATGACCGATGCTTGGAGTGACCGGAAAAGAAGAAGCATCATGAATTTGTGTATCAATTGTGCGGAAGGCACAACTTTTCTCTCTTCTAAGGAAGCATCGGATGAGGCACACACCGGGACATATATTTTTGAATATGTGGACAAGTGCATTGAAGAAATTGGGCCACAAAATGTGGTTCAAGTGGTGACGGACAATGCTTCAAATAATATGGCGGCGGGAAATTTGATGAAGTTGAAGAGGCCAAACATATTTTGGACTTCATGTGCAACTCACACCTTCAATCTTATGCTTCAAGGAATTGGCAACCAACCTAGATTCAAAGGGGTCATTGAGAAGGCAAAGAGCTTCACCATCTATATTTATGCACATCACAAGACTTTGGCATTGATGAGGAAGTTTACAAAGAAAAGAGATATAGTGAGGCCTGGAGTCACTAGATTTGCAACCGCCTTCCTCACTTTGCAAAGCTTGATGGAGAAGAAGAATGAGTTGAGAGCTATGATCACTAGTGATGAATGGAATGCAAGAAAACATGCAAAGAGTGTAAAGGGGAAGACGGCGGTGAATATTGTTTTGAGTGCTTCTTTTTGGAATGGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

443

Amino Acids

49.76

Weight (kDa)

9.22

Isoelectric Point (pI)

43.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF659 PF04937 209 - 359 1.4e-58 Domain of unknown function (DUF659)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 298
AccIII TCCGGA 1 cut(s) 424
AclWI GGATC 1 cut(s) 416
AcsI RAATTY 2 cut(s) 775, 952
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 2 cut(s) 199, 744
AhlI ACTAGT 1 cut(s) 1238
AjnI CCWGG 1 cut(s) 1156
AluBI AGCT 4 cut(s) 573, 1077, 1200, 1229
AluI AGCT 4 cut(s) 573, 1077, 1200, 1229
AlwI GGATC 1 cut(s) 416
Ama87I CYCGRG 1 cut(s) 610
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 5 cut(s) 392, 607, 893, 971, 1154
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 2 cut(s) 775, 952
AspS9I GGNCC 4 cut(s) 392, 400, 608, 893
AsuC2I CCSGG 4 cut(s) 541, 611, 612, 847
AsuHPI GGTGA 4 cut(s) 86, 928, 1072, 1306
AvaI CYCGRG 1 cut(s) 610
AvaII GGWCC 1 cut(s) 400
BarI GAAGNNNNNNTAC 3 cut(s) 33, 211, 243
BbsI GAAGAC 3 cut(s) 219, 351, 1292
BbvI GCAGC 1 cut(s) 199
BccI CCATC 7 cut(s) 40, 78, 425, 434, 519, 1091, 1198
BceAI ACGGC 1 cut(s) 1305
BciT130I CCWGG 1 cut(s) 1158
BclI TGATCA 1 cut(s) 1233
BcnI CCSGG 4 cut(s) 541, 611, 612, 847
BcuI ACTAGT 1 cut(s) 1238
BfaI CTAG 4 cut(s) 522, 1044, 1167, 1239
BisI GCNGC 3 cut(s) 213, 380, 945
BlsI GCNGC 3 cut(s) 214, 381, 946
Bme1390I CCNGG 5 cut(s) 541, 611, 612, 847, 1158
Bme18I GGWCC 1 cut(s) 400
BmeT110I CYCGRG 1 cut(s) 610
BmgT120I GGNCC 4 cut(s) 392, 400, 608, 893
BmiI GGNNCC 1 cut(s) 648
BmrFI CCNGG 5 cut(s) 541, 611, 612, 847, 1158
BmsI GCATC 8 cut(s) 35, 97, 419, 466, 517, 730, 777, 836
BpiI GAAGAC 3 cut(s) 219, 351, 1292
BpmI CTGGAG 1 cut(s) 1179
BpuMI CCSGG 4 cut(s) 541, 611, 612, 847
Bsa29I ATCGAT 1 cut(s) 420
BsaJI CCNNGG 2 cut(s) 21, 610
BsaWI WCCGGW 2 cut(s) 424, 753
Bsc4I CCNNNNNNNGG 2 cut(s) 199, 744
Bse3DI GCAATG 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 424
BseBI CCWGG 1 cut(s) 1158
BseCI ATCGAT 1 cut(s) 420
BseDI CCNNGG 2 cut(s) 21, 610
BseGI GGATG 6 cut(s) 89, 112, 238, 410, 445, 838
BseLI CCNNNNNNNGG 2 cut(s) 199, 744
BseMI GCAATG 1 cut(s) 42
BseXI GCAGC 1 cut(s) 199
BshFI GGCC 5 cut(s) 394, 609, 895, 973, 1156
BshVI ATCGAT 1 cut(s) 420
BsiHKCI CYCGRG 1 cut(s) 610
BsiSI CCGG 5 cut(s) 425, 540, 611, 754, 846
BslFI GGGAC 2 cut(s) 379, 862
BslI CCNNNNNNNGG 2 cut(s) 199, 744
BsmFI GGGAC 2 cut(s) 379, 862
BsmI GAATGC 3 cut(s) 262, 381, 1258
BsnI GGCC 5 cut(s) 394, 609, 895, 973, 1156
BsoBI CYCGRG 1 cut(s) 610
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 2 cut(s) 421, 1233
BspANI GGCC 5 cut(s) 394, 609, 895, 973, 1156
BspDI ATCGAT 1 cut(s) 420
BspEI TCCGGA 1 cut(s) 424
BspHI TCATGA 1 cut(s) 771
BspLI GGNNCC 1 cut(s) 648
BspPI GGATC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 42
BssECI CCNNGG 2 cut(s) 21, 610
BssMI GATC 2 cut(s) 421, 1233
Bst2UI CCWGG 1 cut(s) 1158
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 5 cut(s) 261, 657, 699, 820, 962
BstAPI GCANNNNNTGC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 279, 819
BstEII GGTNACC 1 cut(s) 614
BstF5I GGATG 6 cut(s) 89, 112, 238, 410, 445, 838
BstKTI GATC 2 cut(s) 424, 1236
BstMBI GATC 2 cut(s) 421, 1233
BstMWI GCNNNNNNNGC 2 cut(s) 32, 101
BstNI CCWGG 1 cut(s) 1158
BstNSI RCATGY 1 cut(s) 1268
BstPI GGTNACC 1 cut(s) 614
BstSCI CCNGG 5 cut(s) 539, 609, 610, 845, 1156
BstV1I GCAGC 1 cut(s) 199
BstV2I GAAGAC 3 cut(s) 219, 351, 1292
Bsu15I ATCGAT 1 cut(s) 420
BsuRI GGCC 5 cut(s) 394, 609, 895, 973, 1156
BsuTUI ATCGAT 1 cut(s) 420
BtsCI GGATG 6 cut(s) 89, 112, 238, 410, 445, 838
CciI TCATGA 1 cut(s) 771
Cfr13I GGNCC 4 cut(s) 392, 400, 608, 893
Cfr9I CCCGGG 1 cut(s) 610
ClaI ATCGAT 1 cut(s) 420
Csp6I GTAC 1 cut(s) 9
CviAII CATG 6 cut(s) 65, 302, 554, 772, 993, 1265
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 2 cut(s) 279, 819
DpnI GATC 2 cut(s) 423, 1235
DpnII GATC 2 cut(s) 421, 1233
DraIII CACNNNGTG 1 cut(s) 503
Eam1104I CTCTTC 5 cut(s) 261, 657, 699, 820, 962
EarI CTCTTC 5 cut(s) 261, 657, 699, 820, 962
EciI GGCGGA 1 cut(s) 119
Eco147I AGGCCT 1 cut(s) 1156
Eco47I GGWCC 1 cut(s) 400
Eco88I CYCGRG 1 cut(s) 610
Eco91I GGTNACC 1 cut(s) 614
EcoO65I GGTNACC 1 cut(s) 614
EcoRII CCWGG 1 cut(s) 1156
FaeI CATG 6 cut(s) 68, 305, 557, 775, 996, 1268
FaqI GGGAC 2 cut(s) 379, 862
FatI CATG 6 cut(s) 64, 301, 553, 771, 992, 1264
FauI CCCGC 1 cut(s) 940
FbaI TGATCA 1 cut(s) 1233
FblI GTMKAC 1 cut(s) 298
Fnu4HI GCNGC 3 cut(s) 213, 380, 945
FokI GGATG 6 cut(s) 96, 119, 245, 397, 452, 845
Fsp4HI GCNGC 3 cut(s) 213, 380, 945
FspBI CTAG 4 cut(s) 522, 1044, 1167, 1239
GluI GCNGC 3 cut(s) 213, 380, 945
GsuI CTGGAG 1 cut(s) 1179
HaeIII GGCC 5 cut(s) 394, 609, 895, 973, 1156
HapII CCGG 5 cut(s) 425, 540, 611, 754, 846
Hin1II CATG 6 cut(s) 68, 305, 557, 775, 996, 1268
HindIII AAGCTT 1 cut(s) 1198
HinfI GANTC 5 cut(s) 358, 428, 544, 1047, 1161
HpaII CCGG 5 cut(s) 425, 540, 611, 754, 846
HphI GGTGA 4 cut(s) 86, 928, 1072, 1306
Hpy166II GTNNAC 3 cut(s) 299, 871, 1131
Hpy188I TCNGA 3 cut(s) 43, 232, 832
Hpy188III TCNNGA 3 cut(s) 425, 577, 772
Hpy8I GTNNAC 3 cut(s) 299, 871, 1131
HpyAV CCTTC 6 cut(s) 329, 652, 791, 1018, 1060, 1192
HpyCH4III ACNGT 1 cut(s) 404
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 101
HpyF3I CTNAG 2 cut(s) 279, 819
Hsp92II CATG 6 cut(s) 68, 305, 557, 775, 996, 1268
Kpn2I TCCGGA 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 1233
Kzo9I GATC 2 cut(s) 421, 1233
LmnI GCTCC 1 cut(s) 646
LpnPI CCDG 8 cut(s) 57, 438, 553, 624, 767, 859, 1143, 1170
Lsp1109I GCAGC 1 cut(s) 199
LweI GCATC 8 cut(s) 35, 97, 419, 466, 517, 730, 777, 836
MaeI CTAG 4 cut(s) 522, 1044, 1167, 1239
MaeIII GTNAC 4 cut(s) 614, 749, 916, 1162
MalI GATC 2 cut(s) 423, 1235
MboI GATC 2 cut(s) 421, 1233
MfeI CAATTG 1 cut(s) 787
MluCI AATT 9 cut(s) 149, 312, 602, 638, 775, 787, 888, 952, 1029
MlyI GAGTC 2 cut(s) 367, 1170
MmeI TCCRAC 1 cut(s) 21
MroI TCCGGA 1 cut(s) 424
MseI TTAA 1 cut(s) 641
MspI CCGG 5 cut(s) 425, 540, 611, 754, 846
MspR9I CCNGG 5 cut(s) 541, 611, 612, 847, 1158
MunI CAATTG 1 cut(s) 787
Mva1269I GAATGC 3 cut(s) 262, 381, 1258
MvaI CCWGG 1 cut(s) 1158
MwoI GCNNNNNNNGC 2 cut(s) 32, 101
NciI CCSGG 4 cut(s) 541, 611, 612, 847
NdeII GATC 2 cut(s) 421, 1233
NlaIII CATG 6 cut(s) 68, 305, 557, 775, 996, 1268
NlaIV GGNNCC 1 cut(s) 648
NmuCI GTSAC 3 cut(s) 749, 916, 1162
NspI RCATGY 1 cut(s) 1268
PagI TCATGA 1 cut(s) 771
PceI AGGCCT 1 cut(s) 1156
PctI GAATGC 3 cut(s) 262, 381, 1258
PfeI GAWTC 3 cut(s) 428, 544, 1047
PkrI GCNGC 3 cut(s) 214, 381, 946
PleI GAGTC 2 cut(s) 366, 1169
PpsI GAGTC 2 cut(s) 366, 1169
Psp6I CCWGG 1 cut(s) 1156
PspEI GGTNACC 1 cut(s) 614
PspGI CCWGG 1 cut(s) 1156
PspN4I GGNNCC 1 cut(s) 648
PspPI GGNCC 4 cut(s) 392, 400, 608, 893
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 641
SatI GCNGC 3 cut(s) 213, 380, 945
Sau3AI GATC 2 cut(s) 421, 1233
Sau96I GGNCC 4 cut(s) 392, 400, 608, 893
SchI GAGTC 2 cut(s) 367, 1170
ScrFI CCNGG 5 cut(s) 541, 611, 612, 847, 1158
SfaNI GCATC 8 cut(s) 35, 97, 419, 466, 517, 730, 777, 836
SinI GGWCC 1 cut(s) 400
SmaI CCCGGG 1 cut(s) 612
SpeI ACTAGT 1 cut(s) 1238
Sse9I AATT 9 cut(s) 149, 312, 602, 638, 775, 787, 888, 952, 1029
SseBI AGGCCT 1 cut(s) 1156
SspI AATATT 1 cut(s) 1300
SspMI CTAG 4 cut(s) 522, 1044, 1167, 1239
StuI AGGCCT 1 cut(s) 1156
StyD4I CCNGG 5 cut(s) 539, 609, 610, 845, 1156
TaaI ACNGT 1 cut(s) 404
TaqI TCGA 3 cut(s) 172, 420, 588
TaqII GACCGA 1 cut(s) 752
TasI AATT 9 cut(s) 149, 312, 602, 638, 775, 787, 888, 952, 1029
TauI GCSGC 2 cut(s) 382, 947
TfiI GAWTC 3 cut(s) 428, 544, 1047
Tru1I TTAA 1 cut(s) 641
Tru9I TTAA 1 cut(s) 641
TseFI GTSAC 3 cut(s) 749, 916, 1162
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 3 cut(s) 749, 916, 1162
TspGWI ACGGA 1 cut(s) 935
TspMI CCCGGG 1 cut(s) 610
VpaK11BI GGWCC 1 cut(s) 400
XapI RAATTY 2 cut(s) 775, 952
XceI RCATGY 1 cut(s) 1268
XcmI CCANNNNNNNNNTGG 1 cut(s) 981
XmaI CCCGGG 1 cut(s) 610
XmiI GTMKAC 1 cut(s) 298
XspI CTAG 4 cut(s) 522, 1044, 1167, 1239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.