Rmu_sc0000555.1_g000022

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000555.1
OG0000698
Physical Location & Seq
Forward (+)
85239 .. 85949
711 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000555.1_g000022.1.cds

Sequence Viewer

Length: 711 bp
atggcgagcactacatcttcctcagcatctaatgcaatgtcttcaatggatagatcattaaagcatggttcgggtgatattggatgggagtatgcggagttggcggatgcttcaaacttggataggttgaagtgtaagttgtgtgggaaattggtgagtggtggaatatatcgaatgaagcaacatattgcccacataaagggaaacgtggctccttgtaaaaagtcttcggatgaggatatagccaaatgcaagaatgctattgaagaggcaaagtctaagaagaaacaaaagagtatgaatgaagtagaagtgaggcaaaaagtcattcttgaaggagatgtagacaatgaagcgagtcaagggacaacaagaaagccgcatacccttgggcctatggaccgttttgcatcccccattgatccggattcttcaatggaaggaagtaggaagatgaggcaacaaaatatcaatgatgctcttttcaagcaaagaacacatagagtgcatcaatacttggctagatgggtgtatgaagccgggattccttttcatgccattgatagtgatagcttcaagaggtttgttgaagatgttggtcaatttggcccaagttaccgacctccaagccaatatcaattaagggagccactattgaaggaagaggtagagagaactaaaagttcattgaagaagcaagaagaagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

236

Amino Acids

26.59

Weight (kDa)

8.9

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 345
AccIII TCCGGA 1 cut(s) 424
AciI CCGC 3 cut(s) 95, 104, 380
AclWI GGATC 1 cut(s) 416
AfiI CCNNNNNNNGG 1 cut(s) 199
AluBI AGCT 1 cut(s) 573
AluI AGCT 1 cut(s) 573
Alw21I GWGCWC 1 cut(s) 11
AlwI GGATC 1 cut(s) 416
Aor13HI TCCGGA 1 cut(s) 424
AoxI GGCC 2 cut(s) 392, 607
AspS9I GGNCC 3 cut(s) 392, 400, 608
AsuC2I CCSGG 1 cut(s) 541
AsuHPI GGTGA 2 cut(s) 86, 166
AvaII GGWCC 1 cut(s) 400
BarI GAAGNNNNNNTAC 2 cut(s) 211, 243
BbsI GAAGAC 2 cut(s) 33, 219
Bbv12I GWGCWC 1 cut(s) 11
BbvCI CCTCAGC 1 cut(s) 22
BccI CCATC 2 cut(s) 78, 519
BcnI CCSGG 1 cut(s) 541
BfaI CTAG 1 cut(s) 522
BisI GCNGC 1 cut(s) 380
BlsI GCNGC 1 cut(s) 381
Bme1390I CCNGG 1 cut(s) 541
Bme18I GGWCC 1 cut(s) 400
BmgT120I GGNCC 3 cut(s) 392, 400, 608
BmiI GGNNCC 2 cut(s) 213, 648
BmrFI CCNGG 1 cut(s) 541
BmsI GCATC 5 cut(s) 35, 97, 419, 466, 517
BpiI GAAGAC 2 cut(s) 33, 219
Bpu10I CCTNAGC 1 cut(s) 22
BpuMI CCSGG 1 cut(s) 541
BsaJI CCNNGG 1 cut(s) 388
BsaWI WCCGGW 1 cut(s) 424
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse3DI GCAATG 1 cut(s) 42
BseAI TCCGGA 1 cut(s) 424
BseDI CCNNGG 1 cut(s) 388
BseGI GGATG 4 cut(s) 89, 112, 238, 410
BseLI CCNNNNNNNGG 1 cut(s) 199
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 36
BshFI GGCC 2 cut(s) 394, 609
BsiHKAI GWGCWC 1 cut(s) 11
BsiSI CCGG 2 cut(s) 425, 540
BslFI GGGAC 1 cut(s) 379
BslI CCNNNNNNNGG 1 cut(s) 199
BsmFI GGGAC 1 cut(s) 379
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 2 cut(s) 394, 609
Bsp1286I GDGCHC 1 cut(s) 11
Bsp13I TCCGGA 1 cut(s) 424
Bsp143I GATC 2 cut(s) 53, 421
BspACI CCGC 3 cut(s) 95, 104, 380
BspANI GGCC 2 cut(s) 394, 609
BspCNI CTCAG 1 cut(s) 35
BspEI TCCGGA 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 213, 648
BspPI GGATC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 388
BssMI GATC 2 cut(s) 53, 421
BssT1I CCWWGG 1 cut(s) 388
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 3 cut(s) 261, 657, 699
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 2 cut(s) 22, 279
BstF5I GGATG 4 cut(s) 89, 112, 238, 410
BstKTI GATC 2 cut(s) 56, 424
BstMBI GATC 2 cut(s) 53, 421
BstMWI GCNNNNNNNGC 2 cut(s) 32, 101
BstSCI CCNGG 1 cut(s) 539
BstV2I GAAGAC 2 cut(s) 33, 219
BsuRI GGCC 2 cut(s) 394, 609
BtsCI GGATG 4 cut(s) 89, 112, 238, 410
Cac8I GCNNGC 1 cut(s) 7
Cfr13I GGNCC 3 cut(s) 392, 400, 608
CviAII CATG 2 cut(s) 65, 554
DdeI CTNAG 2 cut(s) 22, 279
DpnI GATC 2 cut(s) 55, 423
DpnII GATC 2 cut(s) 53, 421
Eam1104I CTCTTC 3 cut(s) 261, 657, 699
EarI CTCTTC 3 cut(s) 261, 657, 699
EciI GGCGGA 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 388
FaeI CATG 2 cut(s) 68, 557
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FaqI GGGAC 1 cut(s) 379
FatI CATG 2 cut(s) 64, 553
FblI GTMKAC 1 cut(s) 345
Fnu4HI GCNGC 1 cut(s) 380
FokI GGATG 4 cut(s) 96, 119, 245, 397
Fsp4HI GCNGC 1 cut(s) 380
FspBI CTAG 1 cut(s) 522
GluI GCNGC 1 cut(s) 380
HaeIII GGCC 2 cut(s) 394, 609
HapII CCGG 2 cut(s) 425, 540
Hin1II CATG 2 cut(s) 68, 557
HinfI GANTC 3 cut(s) 358, 428, 544
HpaII CCGG 2 cut(s) 425, 540
HphI GGTGA 2 cut(s) 86, 166
Hpy166II GTNNAC 1 cut(s) 346
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 3 cut(s) 332, 425, 577
Hpy8I GTNNAC 1 cut(s) 346
HpyAV CCTTC 3 cut(s) 329, 434, 652
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4IV ACGT 1 cut(s) 207
HpyCH4V TGCA 4 cut(s) 35, 252, 410, 508
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 101
HpyF3I CTNAG 2 cut(s) 22, 279
HpySE526I ACGT 1 cut(s) 207
Hsp92II CATG 2 cut(s) 68, 557
Kpn2I TCCGGA 1 cut(s) 424
Kzo9I GATC 2 cut(s) 53, 421
LmnI GCTCC 2 cut(s) 217, 646
LpnPI CCDG 2 cut(s) 438, 553
LweI GCATC 5 cut(s) 35, 97, 419, 466, 517
MaeI CTAG 1 cut(s) 522
MaeII ACGT 1 cut(s) 207
MaeIII GTNAC 1 cut(s) 614
MalI GATC 2 cut(s) 55, 423
MboI GATC 2 cut(s) 53, 421
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 3 cut(s) 149, 602, 638
MlyI GAGTC 1 cut(s) 367
MnlI CCTC 8 cut(s) 31, 229, 262, 309, 450, 573, 633, 658
MroI TCCGGA 1 cut(s) 424
MseI TTAA 2 cut(s) 59, 641
MspI CCGG 2 cut(s) 425, 540
MspR9I CCNGG 1 cut(s) 541
Mva1269I GAATGC 1 cut(s) 262
MwoI GCNNNNNNNGC 2 cut(s) 32, 101
NciI CCSGG 1 cut(s) 541
NdeII GATC 2 cut(s) 53, 421
NlaIII CATG 2 cut(s) 68, 557
NlaIV GGNNCC 2 cut(s) 213, 648
PctI GAATGC 1 cut(s) 262
PfeI GAWTC 2 cut(s) 428, 544
PkrI GCNGC 1 cut(s) 381
PleI GAGTC 1 cut(s) 366
PpsI GAGTC 1 cut(s) 366
PspN4I GGNNCC 2 cut(s) 213, 648
PspPI GGNCC 3 cut(s) 392, 400, 608
SaqAI TTAA 2 cut(s) 59, 641
SatI GCNGC 1 cut(s) 380
Sau3AI GATC 2 cut(s) 53, 421
Sau96I GGNCC 3 cut(s) 392, 400, 608
SchI GAGTC 1 cut(s) 367
ScrFI CCNGG 1 cut(s) 541
SduI GDGCHC 1 cut(s) 11
SetI ASST 6 cut(s) 128, 210, 575, 584, 625, 669
SfaNI GCATC 5 cut(s) 35, 97, 419, 466, 517
SinI GGWCC 1 cut(s) 400
Sse9I AATT 3 cut(s) 149, 602, 638
SsiI CCGC 3 cut(s) 95, 104, 380
SspMI CTAG 1 cut(s) 522
StyD4I CCNGG 1 cut(s) 539
StyI CCWWGG 1 cut(s) 388
TaaI ACNGT 1 cut(s) 404
TaiI ACGT 1 cut(s) 210
TaqI TCGA 1 cut(s) 172
TasI AATT 3 cut(s) 149, 602, 638
TauI GCSGC 1 cut(s) 382
TfiI GAWTC 2 cut(s) 428, 544
Tru1I TTAA 2 cut(s) 59, 641
Tru9I TTAA 2 cut(s) 59, 641
TspDTI ATGAA 7 cut(s) 191, 314, 318, 366, 542, 549, 675
VpaK11BI GGWCC 1 cut(s) 400
XmiI GTMKAC 1 cut(s) 345
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.