pycom09g15950

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0000698
Physical Location & Seq
Forward (+)
16043740 .. 16044180
441 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g15950.1

Sequence Viewer

Length: 348 bp
ATGAAGGGGATTTTTACTTGTGTTGATAAGTTCTTCCCCGATAACTATGAGGTTCAAAACCCAATGATAAATGTTAAGATGCACAAGTATAAAGTAAAAGAAGGTGGATTTAGAAGACATTTGGCCGAAATTAGATGCGTTGAGAATGATGAAAACTATAATTTGGTTGCATGGTGGTATAATTATGGAAATGGTGTGCCTAATTTGCAAAGGATAGATATAAAGATTCTCTCATTGACTACAAGTTCATCCAGTTGTGAAAGAAATTGGAGTTCTTTTGAAGGTATACATACAAAGAAAAGGAATAGACTAGATGCAACAAGTTTAAATAATTTAGTCTATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

116

Amino Acids

13.52

Weight (kDa)

9.03

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 41 - 115 1.6e-12 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 286
AcoI YGGCCR 1 cut(s) 123
AgsI TTSAA 2 cut(s) 56, 281
AoxI GGCC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 121
BfaI CTAG 1 cut(s) 311
BmsI GCATC 3 cut(s) 69, 125, 304
BpiI GAAGAC 1 cut(s) 121
Bse1I ACTGG 1 cut(s) 252
BseGI GGATG 1 cut(s) 248
BseNI ACTGG 1 cut(s) 252
BshFI GGCC 1 cut(s) 125
BsnI GGCC 1 cut(s) 125
BspANI GGCC 1 cut(s) 125
BsrI ACTGG 1 cut(s) 252
BssNAI GTATAC 1 cut(s) 287
Bst1107I GTATAC 1 cut(s) 287
BstF5I GGATG 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstV2I GAAGAC 1 cut(s) 121
BstZ17I GTATAC 1 cut(s) 287
BsuRI GGCC 1 cut(s) 125
BtsCI GGATG 1 cut(s) 248
CviAII CATG 1 cut(s) 171
CviJI RGCY 1 cut(s) 125
CviKI_1 RGCY 1 cut(s) 125
DraI TTTAAA 1 cut(s) 327
EaeI YGGCCR 1 cut(s) 123
FaeI CATG 1 cut(s) 174
FatI CATG 1 cut(s) 170
FblI GTMKAC 1 cut(s) 286
FokI GGATG 1 cut(s) 235
FspBI CTAG 1 cut(s) 311
HaeIII GGCC 1 cut(s) 125
Hin1II CATG 1 cut(s) 174
HinfI GANTC 1 cut(s) 226
Hpy166II GTNNAC 1 cut(s) 287
Hpy8I GTNNAC 1 cut(s) 287
HpyAV CCTTC 2 cut(s) 95, 275
HpyCH4V TGCA 4 cut(s) 82, 170, 208, 317
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
Hsp92II CATG 1 cut(s) 174
LpnPI CCDG 1 cut(s) 265
LweI GCATC 3 cut(s) 69, 125, 304
MaeI CTAG 1 cut(s) 311
MboII GAAGA 2 cut(s) 25, 126
MluCI AATT 6 cut(s) 129, 160, 181, 202, 265, 331
MnlI CCTC 1 cut(s) 43
MseI TTAA 2 cut(s) 75, 326
MwoI GCNNNNNNNGC 1 cut(s) 205
NlaIII CATG 1 cut(s) 174
PfeI GAWTC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 75, 326
SetI ASST 3 cut(s) 54, 106, 286
SfaNI GCATC 3 cut(s) 69, 125, 304
SgeI CNNG 8 cut(s) 30, 50, 97, 183, 255, 264, 323, 333
Sse9I AATT 6 cut(s) 129, 160, 181, 202, 265, 331
SspMI CTAG 1 cut(s) 311
TasI AATT 6 cut(s) 129, 160, 181, 202, 265, 331
TfiI GAWTC 1 cut(s) 226
Tru1I TTAA 2 cut(s) 75, 326
Tru9I TTAA 2 cut(s) 75, 326
TspDTI ATGAA 3 cut(s) 17, 165, 237
XmiI GTMKAC 1 cut(s) 286
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.