FvH4_3g29752

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000698
Physical Location & Seq
Reverse (-)
22834671 .. 22835777
1107 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g29752.t1

Sequence Viewer

Length: 642 bp
ATGAGTTGTTTTCTAAGGAAATTGATGAGAGCTCTGGTCAAATTACGGAGGAAATTGAAAAGTGCAACGATTGTGTGCTCAAGAAGAAGAGAGGCTTATCTCCGCTTGTGGTTTGCGGCGGCGAGAAGCGAGGCGGCGAAGATGGCTTGTTCCCAGACCCAAGCTGATTACCTACTTTCTATCAAATTAGCAACGCCGGAGAAAGATGAGTGCTTGGTCGGAGTGGAGAAGGACCGGCGAGACCGGTCGGGTCTTTACCGATCCGGGCTTTCATCGGGCTTTGAAATGACGGGTACTACTTCTTCCGGAGAGTTGAATACAATGTCAGAGATTGAGATGTCTTTGAAGCGTAAATCCGAGGATGTTGGATGGAAATATAATGCATTGGTGAACCCTTCAAATGTAGACAAGGTGAAATGCAAGTTGTGTGGGAAAGTATTTAGTGGTGGAATATATCGGCTTAAACAACATACTGCCCATGTGAAAGGGAATGCGACTCCGTGTAATAAGTCTTCAGATGAGGTTAAGAAGAAGTCTAATAAGGATTGTAGTCGGTTGTGTATAAAACAACCTCCCAAGCCTGTAAACCAGCAAACATTCCACCACAACCGAGGCCGCCCTAAGGTTCCCGCCCATAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

214

Amino Acids

24.0

Weight (kDa)

10.01

Isoelectric Point (pI)

58.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 405
AccIII TCCGGA 1 cut(s) 305
AciI CCGC 6 cut(s) 103, 116, 119, 134, 616, 630
AclWI GGATC 1 cut(s) 255
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 1 cut(s) 295
AfiI CCNNNNNNNGG 1 cut(s) 622
AgeI ACCGGT 1 cut(s) 243
AgsI TTSAA 5 cut(s) 58, 284, 316, 346, 399
AluBI AGCT 2 cut(s) 32, 164
AluI AGCT 2 cut(s) 32, 164
Alw21I GWGCWC 2 cut(s) 34, 80
Alw26I GTCTC 1 cut(s) 234
AlwI GGATC 1 cut(s) 255
Aor13HI TCCGGA 1 cut(s) 305
AoxI GGCC 1 cut(s) 613
AsiGI ACCGGT 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 232
AsuC2I CCSGG 1 cut(s) 265
AsuHPI GGTGA 2 cut(s) 400, 424
AvaII GGWCC 1 cut(s) 232
AxyI CCTNAGG 1 cut(s) 621
BanII GRGCYC 1 cut(s) 34
BarI GAAGNNNNNNTAC 4 cut(s) 286, 318, 496, 528
BbsI GAAGAC 1 cut(s) 504
Bbv12I GWGCWC 2 cut(s) 34, 80
BccI CCATC 2 cut(s) 136, 363
BcnI CCSGG 1 cut(s) 265
BcoDI GTCTC 1 cut(s) 234
BisI GCNGC 4 cut(s) 117, 120, 135, 616
BlsI GCNGC 4 cut(s) 118, 121, 136, 617
Bme1390I CCNGG 1 cut(s) 265
Bme18I GGWCC 1 cut(s) 232
BmgT120I GGNCC 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 627
BmrFI CCNGG 1 cut(s) 265
BpiI GAAGAC 1 cut(s) 504
BpuEI CTTGAG 1 cut(s) 64
BpuMI CCSGG 1 cut(s) 265
BsaI GGTCTC 1 cut(s) 234
BsaJI CCNNGG 2 cut(s) 357, 610
BsaWI WCCGGW 2 cut(s) 243, 305
Bsc4I CCNNNNNNNGG 1 cut(s) 622
Bse118I RCCGGY 2 cut(s) 234, 243
Bse21I CCTNAGG 1 cut(s) 621
BseAI TCCGGA 1 cut(s) 305
BseDI CCNNGG 2 cut(s) 357, 610
BseGI GGATG 2 cut(s) 367, 374
BseLI CCNNNNNNNGG 1 cut(s) 622
Bsh1285I CGRYCG 1 cut(s) 248
BshFI GGCC 1 cut(s) 615
BshTI ACCGGT 1 cut(s) 243
BsiEI CGRYCG 1 cut(s) 248
BsiHKAI GWGCWC 2 cut(s) 34, 80
BsiSI CCGG 5 cut(s) 197, 235, 244, 264, 306
BslI CCNNNNNNNGG 1 cut(s) 622
BsmAI GTCTC 1 cut(s) 234
BsmI GAATGC 1 cut(s) 496
BsnI GGCC 1 cut(s) 615
Bso31I GGTCTC 1 cut(s) 234
Bsp1286I GDGCHC 2 cut(s) 34, 80
Bsp13I TCCGGA 1 cut(s) 305
Bsp143I GATC 1 cut(s) 260
BspACI CCGC 6 cut(s) 103, 116, 119, 134, 616, 630
BspANI GGCC 1 cut(s) 615
BspEI TCCGGA 1 cut(s) 305
BspLI GGNNCC 1 cut(s) 627
BspPI GGATC 1 cut(s) 255
BspTNI GGTCTC 1 cut(s) 234
BsrFI RCCGGY 2 cut(s) 234, 243
BssAI RCCGGY 2 cut(s) 234, 243
BssECI CCNNGG 2 cut(s) 357, 610
BssMI GATC 1 cut(s) 260
Bst6I CTCTTC 1 cut(s) 82
BstDEI CTNAG 2 cut(s) 14, 621
BstF5I GGATG 2 cut(s) 367, 374
BstKTI GATC 1 cut(s) 263
BstMAI GTCTC 1 cut(s) 234
BstMBI GATC 1 cut(s) 260
BstMCI CGRYCG 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 263
BstV2I GAAGAC 1 cut(s) 504
Bsu36I CCTNAGG 1 cut(s) 621
BsuRI GGCC 1 cut(s) 615
BtsCI GGATG 2 cut(s) 367, 374
Cfr10I RCCGGY 2 cut(s) 234, 243
Cfr13I GGNCC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 294
CspAI ACCGGT 1 cut(s) 243
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviAII CATG 1 cut(s) 479
CviJI RGCY 9 cut(s) 32, 95, 146, 164, 268, 279, 460, 580, 615
CviKI_1 RGCY 9 cut(s) 32, 95, 146, 164, 268, 279, 460, 580, 615
CviQI GTAC 1 cut(s) 294
DdeI CTNAG 2 cut(s) 14, 621
DpnI GATC 1 cut(s) 262
DpnII GATC 1 cut(s) 260
Eam1104I CTCTTC 1 cut(s) 82
EarI CTCTTC 1 cut(s) 82
Ecl136II GAGCTC 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 34
Eco31I GGTCTC 1 cut(s) 234
Eco47I GGWCC 1 cut(s) 232
Eco53kI GAGCTC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 498
Eco81I CCTNAGG 1 cut(s) 621
EcoICRI GAGCTC 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 385
EcoT38I GRGCYC 1 cut(s) 34
FaeI CATG 1 cut(s) 482
FaiI YATR 6 cut(s) 378, 454, 471, 480, 563, 636
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FatI CATG 1 cut(s) 478
FauI CCCGC 1 cut(s) 637
FblI GTMKAC 1 cut(s) 405
Fnu4HI GCNGC 4 cut(s) 117, 120, 135, 616
FokI GGATG 2 cut(s) 374, 381
FriOI GRGCYC 1 cut(s) 34
Fsp4HI GCNGC 4 cut(s) 117, 120, 135, 616
GluI GCNGC 4 cut(s) 117, 120, 135, 616
HaeIII GGCC 1 cut(s) 615
HapII CCGG 5 cut(s) 197, 235, 244, 264, 306
Hin1II CATG 1 cut(s) 482
HinfI GANTC 1 cut(s) 496
HpaII CCGG 5 cut(s) 197, 235, 244, 264, 306
HphI GGTGA 2 cut(s) 400, 424
Hpy166II GTNNAC 3 cut(s) 391, 406, 586
Hpy188I TCNGA 4 cut(s) 221, 328, 358, 517
Hpy188III TCNNGA 2 cut(s) 81, 306
Hpy8I GTNNAC 3 cut(s) 391, 406, 586
HpyAV CCTTC 2 cut(s) 223, 405
HpyCH4V TGCA 3 cut(s) 65, 383, 420
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
HpyF3I CTNAG 2 cut(s) 14, 621
Hsp92II CATG 1 cut(s) 482
Kpn2I TCCGGA 1 cut(s) 305
Kzo9I GATC 1 cut(s) 260
LpnPI CCDG 9 cut(s) 20, 167, 210, 248, 257, 277, 319, 594, 602
MalI GATC 1 cut(s) 262
MboI GATC 1 cut(s) 260
MboII GAAGA 6 cut(s) 96, 99, 151, 294, 504, 541
MhlI GDGCHC 2 cut(s) 34, 80
MluCI AATT 4 cut(s) 20, 41, 53, 185
MlyI GAGTC 1 cut(s) 490
MmeI TCCRAC 2 cut(s) 199, 346
MnlI CCTC 7 cut(s) 42, 85, 124, 352, 514, 582, 605
Mph1103I ATGCAT 1 cut(s) 385
MroI TCCGGA 1 cut(s) 305
MseI TTAA 2 cut(s) 462, 525
MspI CCGG 5 cut(s) 197, 235, 244, 264, 306
MspR9I CCNGG 1 cut(s) 265
Mva1269I GAATGC 1 cut(s) 496
MwoI GCNNNNNNNGC 1 cut(s) 143
NciI CCSGG 1 cut(s) 265
NdeII GATC 1 cut(s) 260
NlaIII CATG 1 cut(s) 482
NlaIV GGNNCC 1 cut(s) 627
NsiI ATGCAT 1 cut(s) 385
PctI GAATGC 1 cut(s) 496
PinAI ACCGGT 1 cut(s) 243
PkrI GCNGC 4 cut(s) 118, 121, 136, 617
PleI GAGTC 1 cut(s) 490
PpsI GAGTC 1 cut(s) 490
Psp124BI GAGCTC 1 cut(s) 34
PspN4I GGNNCC 1 cut(s) 627
PspPI GGNCC 1 cut(s) 232
RsaI GTAC 1 cut(s) 295
RsaNI GTAC 1 cut(s) 294
SacI GAGCTC 1 cut(s) 34
SaqAI TTAA 2 cut(s) 462, 525
SatI GCNGC 4 cut(s) 117, 120, 135, 616
Sau3AI GATC 1 cut(s) 260
Sau96I GGNCC 1 cut(s) 232
SchI GAGTC 1 cut(s) 490
ScrFI CCNGG 1 cut(s) 265
SduI GDGCHC 2 cut(s) 34, 80
SetI ASST 7 cut(s) 34, 166, 174, 414, 525, 574, 627
SinI GGWCC 1 cut(s) 232
SmlI CTYRAG 1 cut(s) 79
SmoI CTYRAG 1 cut(s) 79
Sse9I AATT 4 cut(s) 20, 41, 53, 185
SsiI CCGC 6 cut(s) 103, 116, 119, 134, 616, 630
SstI GAGCTC 1 cut(s) 34
StyD4I CCNGG 1 cut(s) 263
TasI AATT 4 cut(s) 20, 41, 53, 185
TauI GCSGC 4 cut(s) 119, 122, 137, 618
Tru1I TTAA 2 cut(s) 462, 525
Tru9I TTAA 2 cut(s) 462, 525
TspDTI ATGAA 1 cut(s) 261
TspGWI ACGGA 2 cut(s) 61, 489
VpaK11BI GGWCC 1 cut(s) 232
XmiI GTMKAC 1 cut(s) 405
Zsp2I ATGCAT 1 cut(s) 385
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.