FvH4_4g20841

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000698
Physical Location & Seq
Forward (+)
23952122 .. 23952603
482 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g20841.t1

Sequence Viewer

Length: 321 bp
ATGATTCTTCACAGAAAGAAAAGAGAGAAAGAGAAAAATGTGGATGTTCTTCTTGCTAGTGAAGCTACTAATGCACAAGGTTTGATTGTTGATGGTGGTGATGAGGATACTTTGTCCGATGTCACTAATGAAATGGTTGGAAATGATTTAGGAGTGGATAGTGGCTTAGAGCCTAGGAGAAGTTTTAGGATTCAAGAAATAAGAAAACTTGAAGAAGATTTTGATTCGGATGAAGAGGAAGAAGAAACTATGGATTTTGATTTTGACTCCGATACCGAAGAAGTACTTGAAGGATATGGAGAAGAAGAATTGGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

107

Amino Acids

12.12

Weight (kDa)

4.05

Isoelectric Point (pI)

55.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 285
AgsI TTSAA 3 cut(s) 194, 212, 290
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
AspA2I CCTAGG 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 110
AvrII CCTAGG 1 cut(s) 173
BccI CCATC 1 cut(s) 86
BciVI GTATCC 1 cut(s) 100
BfaI CTAG 2 cut(s) 57, 174
BfuI GTATCC 1 cut(s) 100
BlnI CCTAGG 1 cut(s) 173
BmcAI AGTACT 1 cut(s) 285
BsaJI CCNNGG 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 173
BseGI GGATG 2 cut(s) 49, 235
BssECI CCNNGG 1 cut(s) 173
BssT1I CCWWGG 1 cut(s) 173
Bst6I CTCTTC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 166
BstF5I GGATG 2 cut(s) 49, 235
BstMWI GCNNNNNNNGC 2 cut(s) 62, 71
BsuI GTATCC 1 cut(s) 100
BtsCI GGATG 2 cut(s) 49, 235
Csp6I GTAC 1 cut(s) 284
CviJI RGCY 3 cut(s) 65, 165, 172
CviKI_1 RGCY 3 cut(s) 65, 165, 172
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 228
EarI CTCTTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 173
FaiI YATR 2 cut(s) 251, 297
FalI AAGNNNNNCTT 2 cut(s) 270, 302
FokI GGATG 2 cut(s) 56, 242
FspBI CTAG 2 cut(s) 57, 174
HinfI GANTC 4 cut(s) 4, 190, 224, 266
HphI GGTGA 1 cut(s) 110
Hpy188I TCNGA 3 cut(s) 118, 229, 271
Hpy188III TCNNGA 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 284
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 71
HpyF3I CTNAG 1 cut(s) 166
MaeI CTAG 2 cut(s) 57, 174
MaeIII GTNAC 1 cut(s) 121
MboII GAAGA 9 cut(s) 41, 224, 227, 245, 251, 254, 290, 314, 317
MluCI AATT 1 cut(s) 308
MlyI GAGTC 1 cut(s) 260
MmeI TCCRAC 1 cut(s) 118
MnlI CCTC 3 cut(s) 97, 229, 307
MwoI GCNNNNNNNGC 2 cut(s) 62, 71
NmuCI GTSAC 1 cut(s) 121
PfeI GAWTC 3 cut(s) 4, 190, 224
PleI GAGTC 1 cut(s) 260
PpsI GAGTC 1 cut(s) 260
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
ScaI AGTACT 1 cut(s) 285
SchI GAGTC 1 cut(s) 260
SetI ASST 2 cut(s) 67, 82
SgeI CNNG 7 cut(s) 65, 69, 89, 186, 206, 221, 299
Sse9I AATT 1 cut(s) 308
SspMI CTAG 2 cut(s) 57, 174
StyI CCWWGG 1 cut(s) 173
TasI AATT 1 cut(s) 308
TatI WGTACW 1 cut(s) 283
TfiI GAWTC 3 cut(s) 4, 190, 224
TseFI GTSAC 1 cut(s) 121
Tsp45I GTSAC 1 cut(s) 121
TspDTI ATGAA 2 cut(s) 144, 246
XmaJI CCTAGG 1 cut(s) 173
XspI CTAG 2 cut(s) 57, 174
ZrmI AGTACT 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.