Rroxscaffold_2G00091530

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000698
Physical Location & Seq
Reverse (-)
13062860 .. 13063126
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00091530.1

Sequence Viewer

Length: 267 bp
ATGCCGCATACTCTTGGGCCTATGGACCGTTTTGCAACCCCCATCGATCCAGATTCTTCATTGGATGGAAGTAGGAAGATGAGGCAACAAAATATCAATGATGCACTTTTCAAGCAAAGAACACATAGTGTGCATCAATACTTGGCTAGATGGGTGTATGAAGCGGGATTCCTTTTCATGCCGTTGATAGTGATAGCTTCAAGAGGTTTGTTGAAGCGGTTGGGCAATTTGGCCGGGGTTACCGACCTCCCAGCCAATATTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

88

Amino Acids

9.91

Weight (kDa)

9.81

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 164, 217
AclWI GGATC 1 cut(s) 41
AcoI YGGCCR 1 cut(s) 231
AdeI CACNNNGTG 1 cut(s) 128
AgsI TTSAA 3 cut(s) 112, 201, 214
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
AlwI GGATC 1 cut(s) 41
AoxI GGCC 2 cut(s) 17, 231
AseI ATTAAT 1 cut(s) 261
AspS9I GGNCC 2 cut(s) 17, 25
AsuC2I CCSGG 1 cut(s) 235
AvaII GGWCC 1 cut(s) 25
BccI CCATC 3 cut(s) 50, 59, 144
BceAI ACGGC 1 cut(s) 166
BcnI CCSGG 1 cut(s) 235
BfaI CTAG 1 cut(s) 147
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
Bme1390I CCNGG 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 2 cut(s) 17, 25
BmrFI CCNGG 1 cut(s) 235
BmsI GCATC 2 cut(s) 91, 142
BpuMI CCSGG 1 cut(s) 235
Bsa29I ATCGAT 1 cut(s) 45
BsaJI CCNNGG 1 cut(s) 234
BseCI ATCGAT 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 70
BseYI CCCAGC 1 cut(s) 250
BshFI GGCC 2 cut(s) 19, 233
BshVI ATCGAT 1 cut(s) 45
BsiSI CCGG 1 cut(s) 234
BsnI GGCC 2 cut(s) 19, 233
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 3 cut(s) 5, 164, 217
BspANI GGCC 2 cut(s) 19, 233
BspDI ATCGAT 1 cut(s) 45
BspPI GGATC 1 cut(s) 41
BssECI CCNNGG 1 cut(s) 234
BssMI GATC 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 29
BstEII GGTNACC 1 cut(s) 238
BstF5I GGATG 1 cut(s) 70
BstKTI GATC 1 cut(s) 49
BstMBI GATC 1 cut(s) 46
BstPI GGTNACC 1 cut(s) 238
BstSCI CCNGG 1 cut(s) 233
Bsu15I ATCGAT 1 cut(s) 45
BsuRI GGCC 2 cut(s) 19, 233
BsuTUI ATCGAT 1 cut(s) 45
BtsCI GGATG 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 17, 25
ClaI ATCGAT 1 cut(s) 45
CviAII CATG 1 cut(s) 178
CviJI RGCY 5 cut(s) 19, 146, 197, 233, 254
CviKI_1 RGCY 5 cut(s) 19, 146, 197, 233, 254
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
DraIII CACNNNGTG 1 cut(s) 128
EaeI YGGCCR 1 cut(s) 231
Eco47I GGWCC 1 cut(s) 25
Eco91I GGTNACC 1 cut(s) 238
EcoO65I GGTNACC 1 cut(s) 238
FaeI CATG 1 cut(s) 181
FaiI YATR 5 cut(s) 9, 23, 126, 159, 179
FatI CATG 1 cut(s) 177
FauI CCCGC 1 cut(s) 157
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 1 cut(s) 77
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 147
GluI GCNGC 1 cut(s) 5
GsaI CCCAGC 1 cut(s) 254
HaeIII GGCC 2 cut(s) 19, 233
HapII CCGG 1 cut(s) 234
Hin1II CATG 1 cut(s) 181
HinfI GANTC 2 cut(s) 53, 168
HpaII CCGG 1 cut(s) 234
Hpy188III TCNNGA 2 cut(s) 50, 201
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 3 cut(s) 35, 104, 133
Hsp92II CATG 1 cut(s) 181
Kzo9I GATC 1 cut(s) 46
LpnPI CCDG 2 cut(s) 63, 247
LweI GCATC 2 cut(s) 91, 142
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 48
MboI GATC 1 cut(s) 46
MboII GAAGA 2 cut(s) 48, 88
MluCI AATT 2 cut(s) 226, 262
MnlI CCTC 3 cut(s) 75, 197, 257
MseI TTAA 2 cut(s) 261, 265
MspI CCGG 1 cut(s) 234
MspR9I CCNGG 1 cut(s) 235
NciI CCSGG 1 cut(s) 235
NdeII GATC 1 cut(s) 46
NlaIII CATG 1 cut(s) 181
PacI TTAATTAA 1 cut(s) 265
PfeI GAWTC 2 cut(s) 53, 168
PkrI GCNGC 1 cut(s) 6
PshBI ATTAAT 1 cut(s) 261
PspEI GGTNACC 1 cut(s) 238
PspFI CCCAGC 1 cut(s) 250
PspPI GGNCC 2 cut(s) 17, 25
SaqAI TTAA 2 cut(s) 261, 265
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 46
Sau96I GGNCC 2 cut(s) 17, 25
ScrFI CCNGG 1 cut(s) 235
SetI ASST 3 cut(s) 199, 208, 249
SfaNI GCATC 2 cut(s) 91, 142
SinI GGWCC 1 cut(s) 25
Sse9I AATT 2 cut(s) 226, 262
SsiI CCGC 3 cut(s) 5, 164, 217
SspI AATATT 1 cut(s) 259
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 45
TasI AATT 2 cut(s) 226, 262
TauI GCSGC 1 cut(s) 7
TfiI GAWTC 2 cut(s) 53, 168
Tru1I TTAA 2 cut(s) 261, 265
Tru9I TTAA 2 cut(s) 261, 265
TspDTI ATGAA 3 cut(s) 48, 166, 174
VpaK11BI GGWCC 1 cut(s) 25
VspI ATTAAT 1 cut(s) 261
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.