Rh3DG075100

Protein of unknown function (DUF 659)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000698
Physical Location & Seq
Forward (+)
5475144 .. 5476481
1338 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG075100.1

Sequence Viewer

Length: 300 bp
ATGAGAGAATATACAAAGAAGGAATTGAAGCATCTATGTGTAACAAGGTTTGCCTCTAACTTTTTAATGCTTAAATCAATTTTTAATGTACAAAATGAATTAAGGTTGTTGGTTGCTTCTCCTCAATGGAGAGGAATAAACTATAACAGCTTTGAAATGGGAATAAATGTAACTGAACTCATTGAAAGTTTAAAATTTTGGAATGTAGGCCAAGAGGTAATGGATGCTATGGAACCAATTATTCGAGTTATTCGTCTAGTTGGTGGTGATGGGTTTACCACGTACGGGATGCTTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Calmodulin_bind DUF659 Dimer_Tnp_hAT zf-BED

Protein Analysis

99

Amino Acids

11.49

Weight (kDa)

7.88

Isoelectric Point (pI)

19.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 194
AfaI GTAC 2 cut(s) 90, 284
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 3 cut(s) 28, 155, 185
AluBI AGCT 1 cut(s) 150
AluI AGCT 1 cut(s) 150
AoxI GGCC 1 cut(s) 208
ApoI RAATTY 1 cut(s) 194
AsuHPI GGTGA 1 cut(s) 278
BccI CCATC 1 cut(s) 263
BfaI CTAG 1 cut(s) 257
BmiI GGNNCC 1 cut(s) 234
BmsI GCATC 3 cut(s) 40, 214, 279
BsaAI YACGTR 1 cut(s) 282
Bsc4I CCNNNNNNNGG 1 cut(s) 285
BseGI GGATG 2 cut(s) 229, 294
BseLI CCNNNNNNNGG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 111
BshFI GGCC 1 cut(s) 210
BsiWI CGTACG 1 cut(s) 282
BslI CCNNNNNNNGG 1 cut(s) 285
BsnI GGCC 1 cut(s) 210
Bsp1407I TGTACA 1 cut(s) 88
BspANI GGCC 1 cut(s) 210
BspLI GGNNCC 1 cut(s) 234
BsrGI TGTACA 1 cut(s) 88
BstAUI TGTACA 1 cut(s) 88
BstBAI YACGTR 1 cut(s) 282
BstF5I GGATG 2 cut(s) 229, 294
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 2 cut(s) 229, 294
Csp6I GTAC 2 cut(s) 89, 283
CviJI RGCY 2 cut(s) 150, 210
CviKI_1 RGCY 2 cut(s) 150, 210
CviQI GTAC 2 cut(s) 89, 283
DraI TTTAAA 1 cut(s) 192
FaiI YATR 5 cut(s) 12, 37, 144, 230, 298
FokI GGATG 1 cut(s) 236
FspBI CTAG 1 cut(s) 257
HaeIII GGCC 1 cut(s) 210
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 276
HpyAV CCTTC 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 281
HpySE526I ACGT 1 cut(s) 281
LweI GCATC 3 cut(s) 40, 214, 279
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 281
MaeIII GTNAC 2 cut(s) 40, 169
MluCI AATT 5 cut(s) 23, 78, 98, 194, 237
MnlI CCTC 4 cut(s) 64, 125, 132, 208
MseI TTAA 5 cut(s) 65, 72, 84, 101, 191
MslI CAYNNNNRTG 1 cut(s) 36
NlaIV GGNNCC 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 250
Pfl23II CGTACG 1 cut(s) 282
Ppu21I YACGTR 1 cut(s) 282
PspLI CGTACG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 234
RsaI GTAC 2 cut(s) 90, 284
RsaNI GTAC 2 cut(s) 89, 283
RseI CAYNNNNRTG 1 cut(s) 36
SaqAI TTAA 5 cut(s) 65, 72, 84, 101, 191
SetI ASST 5 cut(s) 50, 107, 152, 219, 284
SfaNI GCATC 3 cut(s) 40, 214, 279
SgeI CNNG 5 cut(s) 57, 224, 257, 269, 292
SmiMI CAYNNNNRTG 1 cut(s) 36
Sse9I AATT 5 cut(s) 23, 78, 98, 194, 237
SspMI CTAG 1 cut(s) 257
TaiI ACGT 1 cut(s) 284
TaqI TCGA 1 cut(s) 244
TasI AATT 5 cut(s) 23, 78, 98, 194, 237
TatI WGTACW 1 cut(s) 88
Tru1I TTAA 5 cut(s) 65, 72, 84, 101, 191
Tru9I TTAA 5 cut(s) 65, 72, 84, 101, 191
TspDTI ATGAA 1 cut(s) 111
XapI RAATTY 1 cut(s) 194
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.