Rw1G023020

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000698
Physical Location & Seq
Forward (+)
48750338 .. 48752857
2520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G023020.1

Sequence Viewer

Length: 642 bp
ATGGCATCTTCCGGAGGATCTAATGCTACTAATGAAGCAGATAGATCATTGCGGCGTGGGTCAAATGATGTTGGATGGGACTTTGCGGTGTTGGCGGATCCACACAACTTAGATAAGTTGAAGTTTGGATGGTGGTCCAATTATGGAAATGCAACACCCCAATTGCAAAAAATGGCTAGAAGAATACTCTCTTTAACTACAAGTTCATCCGGGCGCGAGAGGAATTGGAGTACTTTTGAGGGAATCCATACAAAGAAAAGAAATAGACTAGATGCTTCAAGATTGAATAATTTAGTCTATGTCCAATTCAATGCCAAGATTATCTACAAAAAGAGAAGGGCTCAAGAGTTGGGTGTAGATGTGGTACTTGGTCATGAAGCTAGCAAGGCTCAAGGGTGGATTGTGGGTGGTGGTGATGAAGAAGATGACTCGGATATTATTAGTGAAATGGAGGGAGAGTCTTCGGGAGTGGATAGTGGGCTTAGGAGAAGTTCTAGAAATGTAGAGGTAAGAGAGCTTCATGATGAAGATTTTGTATCGGATGAGGACACGGAAGAGGAGGGAGAAGAAGAGGATGTTGAGTTTGAGTCCGATACCGAAGGAGTCTTGGATGGATATGGAGAGGAAGAGTTAGAGATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

213

Amino Acids

23.84

Weight (kDa)

4.53

Isoelectric Point (pI)

58.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 44 - 104 1e-11 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 216
AccIII TCCGGA 1 cut(s) 11
AciI CCGC 3 cut(s) 52, 86, 95
AclWI GGATC 3 cut(s) 25, 92, 105
AfaI GTAC 2 cut(s) 232, 366
AgsI TTSAA 4 cut(s) 121, 279, 286, 310
AluBI AGCT 2 cut(s) 380, 517
AluI AGCT 2 cut(s) 380, 517
AlwI GGATC 3 cut(s) 25, 92, 105
Aor13HI TCCGGA 1 cut(s) 11
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 211
AsuHPI GGTGA 1 cut(s) 425
AsuNHI GCTAGC 1 cut(s) 380
AvaII GGWCC 1 cut(s) 135
BamHI GGATCC 1 cut(s) 97
BanII GRGCYC 1 cut(s) 343
BarI GAAGNNNNNNTAC 2 cut(s) 501, 533
BbsI GAAGAC 1 cut(s) 453
BccI CCATC 3 cut(s) 69, 123, 605
BcnI CCSGG 1 cut(s) 211
BfaI CTAG 4 cut(s) 177, 269, 381, 495
BisI GCNGC 1 cut(s) 53
BlsI GCNGC 1 cut(s) 54
BmcAI AGTACT 1 cut(s) 232
Bme1390I CCNGG 1 cut(s) 211
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BmiI GGNNCC 1 cut(s) 99
BmrFI CCNGG 1 cut(s) 211
BmsI GCATC 2 cut(s) 14, 262
BmtI GCTAGC 1 cut(s) 384
BpiI GAAGAC 1 cut(s) 453
BplI GAGNNNNNCTC 2 cut(s) 325, 357
Bpu10I CCTNAGC 1 cut(s) 482
BpuEI CTTGAG 2 cut(s) 327, 375
BpuMI CCSGG 1 cut(s) 211
BsaWI WCCGGW 1 cut(s) 11
BsaXI ACNNNNNCTCC 2 cut(s) 443, 473
Bse3DI GCAATG 1 cut(s) 47
BseAI TCCGGA 1 cut(s) 11
BseGI GGATG 6 cut(s) 80, 134, 206, 547, 580, 616
BseMI GCAATG 1 cut(s) 47
BseRI GAGGAG 1 cut(s) 572
Bsh1236I CGCG 1 cut(s) 216
BsiSI CCGG 2 cut(s) 12, 210
BslFI GGGAC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 343
Bsp13I TCCGGA 1 cut(s) 11
Bsp143I GATC 3 cut(s) 17, 44, 97
BspACI CCGC 3 cut(s) 52, 86, 95
BspEI TCCGGA 1 cut(s) 11
BspFNI CGCG 1 cut(s) 216
BspHI TCATGA 2 cut(s) 373, 520
BspLI GGNNCC 1 cut(s) 99
BspOI GCTAGC 1 cut(s) 384
BspPI GGATC 3 cut(s) 25, 92, 105
BsrDI GCAATG 1 cut(s) 47
BssMI GATC 3 cut(s) 17, 44, 97
Bst6I CTCTTC 3 cut(s) 549, 564, 621
BstC8I GCNNGC 1 cut(s) 382
BstDEI CTNAG 2 cut(s) 109, 482
BstF5I GGATG 6 cut(s) 80, 134, 206, 547, 580, 616
BstFNI CGCG 1 cut(s) 216
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 3 cut(s) 20, 47, 100
BstMBI GATC 3 cut(s) 17, 44, 97
BstMWI GCNNNNNNNGC 2 cut(s) 92, 386
BstSCI CCNGG 1 cut(s) 209
BstUI CGCG 1 cut(s) 216
BstV2I GAAGAC 1 cut(s) 453
BstX2I RGATCY 2 cut(s) 17, 97
BstYI RGATCY 2 cut(s) 17, 97
BtsCI GGATG 6 cut(s) 80, 134, 206, 547, 580, 616
Cac8I GCNNGC 1 cut(s) 382
CciI TCATGA 2 cut(s) 373, 520
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 1 cut(s) 135
Csp6I GTAC 2 cut(s) 231, 365
CviAII CATG 2 cut(s) 374, 521
CviJI RGCY 6 cut(s) 176, 341, 380, 389, 481, 517
CviKI_1 RGCY 6 cut(s) 176, 341, 380, 389, 481, 517
CviQI GTAC 2 cut(s) 231, 365
DdeI CTNAG 2 cut(s) 109, 482
DpnI GATC 3 cut(s) 19, 46, 99
DpnII GATC 3 cut(s) 17, 44, 97
Eam1104I CTCTTC 3 cut(s) 549, 564, 621
EarI CTCTTC 3 cut(s) 549, 564, 621
EciI GGCGGA 1 cut(s) 110
Eco24I GRGCYC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 343
FaeI CATG 2 cut(s) 377, 524
FaiI YATR 6 cut(s) 144, 249, 300, 375, 522, 618
FaqI GGGAC 1 cut(s) 92
FatI CATG 2 cut(s) 373, 520
Fnu4HI GCNGC 1 cut(s) 53
FokI GGATG 6 cut(s) 87, 141, 193, 554, 587, 623
FriOI GRGCYC 1 cut(s) 343
Fsp4HI GCNGC 1 cut(s) 53
FspBI CTAG 4 cut(s) 177, 269, 381, 495
GlaI GCGC 1 cut(s) 215
GluI GCNGC 1 cut(s) 53
HapII CCGG 2 cut(s) 12, 210
HhaI GCGC 1 cut(s) 216
Hin1II CATG 2 cut(s) 377, 524
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HinfI GANTC 5 cut(s) 243, 428, 458, 587, 603
HpaII CCGG 2 cut(s) 12, 210
HphI GGTGA 1 cut(s) 425
Hpy188I TCNGA 3 cut(s) 433, 541, 592
Hpy188III TCNNGA 7 cut(s) 12, 279, 344, 374, 465, 495, 521
HpyAV CCTTC 2 cut(s) 330, 593
HpyCH4V TGCA 2 cut(s) 152, 166
HpyF10VI GCNNNNNNNGC 2 cut(s) 92, 386
HpyF3I CTNAG 2 cut(s) 109, 482
Hsp92II CATG 2 cut(s) 377, 524
HspAI GCGC 1 cut(s) 214
Kpn2I TCCGGA 1 cut(s) 11
Kzo9I GATC 3 cut(s) 17, 44, 97
LpnPI CCDG 2 cut(s) 25, 223
LweI GCATC 2 cut(s) 14, 262
MaeI CTAG 4 cut(s) 177, 269, 381, 495
MalI GATC 3 cut(s) 19, 46, 99
MboI GATC 3 cut(s) 17, 44, 97
MboII GAAGA 9 cut(s) 192, 431, 434, 453, 539, 566, 578, 581, 638
MfeI CAATTG 1 cut(s) 161
MflI RGATCY 2 cut(s) 17, 97
MhlI GDGCHC 1 cut(s) 343
MluCI AATT 5 cut(s) 139, 161, 223, 289, 305
MlyI GAGTC 4 cut(s) 422, 467, 596, 612
MmeI TCCRAC 1 cut(s) 52
MroI TCCGGA 1 cut(s) 11
MseI TTAA 1 cut(s) 194
MspI CCGG 2 cut(s) 12, 210
MspR9I CCNGG 1 cut(s) 211
MunI CAATTG 1 cut(s) 161
MvnI CGCG 1 cut(s) 216
MwoI GCNNNNNNNGC 2 cut(s) 92, 386
NciI CCSGG 1 cut(s) 211
NdeII GATC 3 cut(s) 17, 44, 97
NheI GCTAGC 1 cut(s) 380
NlaIII CATG 2 cut(s) 377, 524
NlaIV GGNNCC 1 cut(s) 99
PagI TCATGA 2 cut(s) 373, 520
PfeI GAWTC 1 cut(s) 243
PkrI GCNGC 1 cut(s) 54
PleI GAGTC 4 cut(s) 422, 466, 595, 611
PpsI GAGTC 4 cut(s) 422, 466, 595, 611
PspN4I GGNNCC 1 cut(s) 99
PspPI GGNCC 1 cut(s) 135
PsuI RGATCY 2 cut(s) 17, 97
RsaI GTAC 2 cut(s) 232, 366
RsaNI GTAC 2 cut(s) 231, 365
SaqAI TTAA 1 cut(s) 194
SatI GCNGC 1 cut(s) 53
Sau3AI GATC 3 cut(s) 17, 44, 97
Sau96I GGNCC 1 cut(s) 135
ScaI AGTACT 1 cut(s) 232
SchI GAGTC 4 cut(s) 422, 467, 596, 612
ScrFI CCNGG 1 cut(s) 211
SduI GDGCHC 1 cut(s) 343
SetI ASST 3 cut(s) 382, 510, 519
SfaNI GCATC 2 cut(s) 14, 262
SinI GGWCC 1 cut(s) 135
SmlI CTYRAG 2 cut(s) 342, 390
SmoI CTYRAG 2 cut(s) 342, 390
Sse9I AATT 5 cut(s) 139, 161, 223, 289, 305
SsiI CCGC 3 cut(s) 52, 86, 95
SspMI CTAG 4 cut(s) 177, 269, 381, 495
StyD4I CCNGG 1 cut(s) 209
TasI AATT 5 cut(s) 139, 161, 223, 289, 305
TatI WGTACW 1 cut(s) 230
TauI GCSGC 1 cut(s) 55
TfiI GAWTC 1 cut(s) 243
Tru1I TTAA 1 cut(s) 194
Tru9I TTAA 1 cut(s) 194
TspDTI ATGAA 6 cut(s) 48, 195, 390, 432, 509, 540
TspGWI ACGGA 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 135
XbaI TCTAGA 1 cut(s) 494
XspI CTAG 4 cut(s) 177, 269, 381, 495
ZrmI AGTACT 1 cut(s) 232
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.