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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1696 |
| AciI | CCGC | 8 cut(s) | 113, 267, 404, 617, 968, 971, 1278, 1571 |
| AclWI | GGATC | 4 cut(s) | 110, 123, 864, 1790 |
| AcsI | RAATTY | 3 cut(s) | 232, 976, 1070 |
| AdeI | CACNNNGTG | 1 cut(s) | 527 |
| AfaI | GTAC | 4 cut(s) | 14, 66, 1793, 1909 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 768, 1344, 1430, 1506, 1696 |
| AluBI | AGCT | 4 cut(s) | 597, 1224, 1760, 2158 |
| AluI | AGCT | 4 cut(s) | 597, 1224, 1760, 2158 |
| Alw21I | GWGCWC | 1 cut(s) | 1337 |
| Alw26I | GTCTC | 2 cut(s) | 1161, 1679 |
| AlwI | GGATC | 4 cut(s) | 110, 123, 864, 1790 |
| Ama87I | CYCGRG | 1 cut(s) | 634 |
| AoxI | GGCC | 9 cut(s) | 380, 401, 416, 631, 873, 995, 1178, 1497, 1508 |
| ApoI | RAATTY | 3 cut(s) | 232, 976, 1070 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1123, 1155 |
| AseI | ATTAAT | 1 cut(s) | 495 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1614 |
| AspS9I | GGNCC | 7 cut(s) | 380, 416, 632, 873, 1275, 1509, 1812 |
| AsuC2I | CCSGG | 5 cut(s) | 635, 636, 871, 1182, 1888 |
| AsuHPI | GGTGA | 2 cut(s) | 1711, 2066 |
| AvaI | CYCGRG | 1 cut(s) | 634 |
| AvaII | GGWCC | 2 cut(s) | 1275, 1812 |
| BaeGI | GKGCMC | 1 cut(s) | 922 |
| BamHI | GGATCC | 1 cut(s) | 115 |
| BanII | GRGCYC | 1 cut(s) | 2020 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2142, 2174 |
| BbsI | GAAGAC | 4 cut(s) | 828, 1473, 1617, 2094 |
| Bbv12I | GWGCWC | 1 cut(s) | 1337 |
| BccI | CCATC | 8 cut(s) | 87, 458, 1222, 1403, 1432, 1800, 2042, 2246 |
| BceAI | ACGGC | 1 cut(s) | 1329 |
| BclI | TGATCA | 1 cut(s) | 1624 |
| BcnI | CCSGG | 5 cut(s) | 635, 636, 871, 1182, 1888 |
| BcoDI | GTCTC | 2 cut(s) | 1161, 1679 |
| BfaI | CTAG | 7 cut(s) | 5, 546, 1191, 1854, 1946, 1970, 2136 |
| BfmI | CTRYAG | 1 cut(s) | 420 |
| BisI | GCNGC | 4 cut(s) | 267, 404, 969, 1572 |
| BlsI | GCNGC | 4 cut(s) | 268, 405, 970, 1573 |
| BmcAI | AGTACT | 1 cut(s) | 1909 |
| Bme1390I | CCNGG | 5 cut(s) | 635, 636, 871, 1182, 1888 |
| Bme18I | GGWCC | 2 cut(s) | 1275, 1812 |
| BmeT110I | CYCGRG | 1 cut(s) | 634 |
| BmgT120I | GGNCC | 7 cut(s) | 380, 416, 632, 873, 1275, 1509, 1812 |
| BmiI | GGNNCC | 2 cut(s) | 117, 874 |
| BmrFI | CCNGG | 5 cut(s) | 635, 636, 871, 1182, 1888 |
| BmsI | GCATC | 7 cut(s) | 232, 443, 468, 490, 541, 754, 1939 |
| BpiI | GAAGAC | 4 cut(s) | 828, 1473, 1617, 2094 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 1437, 1469, 2002, 2034 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1302, 2123 |
| BpuEI | CTTGAG | 5 cut(s) | 698, 1439, 1703, 2004, 2016 |
| BpuMI | CCSGG | 5 cut(s) | 635, 636, 871, 1182, 1888 |
| BsaAI | YACGTR | 1 cut(s) | 64 |
| BsaBI | GATNNNNATC | 1 cut(s) | 855 |
| BsaI | GGTCTC | 1 cut(s) | 1679 |
| BsaJI | CCNNGG | 3 cut(s) | 634, 870, 1540 |
| BsaWI | WCCGGW | 1 cut(s) | 1798 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 768, 1344, 1430, 1506, 1696 |
| Bse118I | RCCGGY | 1 cut(s) | 563 |
| Bse3DI | GCAATG | 2 cut(s) | 58, 195 |
| Bse8I | GATNNNNATC | 1 cut(s) | 855 |
| BseDI | CCNNGG | 3 cut(s) | 634, 870, 1540 |
| BseJI | GATNNNNATC | 1 cut(s) | 855 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 768, 1344, 1430, 1506, 1696 |
| BseMI | GCAATG | 2 cut(s) | 58, 195 |
| BseRI | GAGGAG | 2 cut(s) | 23, 2213 |
| BseSI | GKGCMC | 1 cut(s) | 922 |
| BseYI | CCCAGC | 1 cut(s) | 34 |
| BshFI | GGCC | 9 cut(s) | 382, 403, 418, 633, 875, 997, 1180, 1499, 1510 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1337 |
| BsiHKCI | CYCGRG | 1 cut(s) | 634 |
| BsiSI | CCGG | 6 cut(s) | 564, 635, 870, 1181, 1799, 1887 |
| BslFI | GGGAC | 1 cut(s) | 110 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 768, 1344, 1430, 1506, 1696 |
| BsmAI | GTCTC | 2 cut(s) | 1161, 1679 |
| BsmFI | GGGAC | 1 cut(s) | 110 |
| BsmI | GAATGC | 3 cut(s) | 567, 1100, 1481 |
| BsnI | GGCC | 9 cut(s) | 382, 403, 418, 633, 875, 997, 1180, 1499, 1510 |
| Bso31I | GGTCTC | 1 cut(s) | 1679 |
| BsoBI | CYCGRG | 1 cut(s) | 634 |
| Bsp1286I | GDGCHC | 3 cut(s) | 922, 1337, 2020 |
| Bsp143I | GATC | 5 cut(s) | 40, 115, 856, 1624, 1795 |
| BspACI | CCGC | 8 cut(s) | 113, 267, 404, 617, 968, 971, 1278, 1571 |
| BspANI | GGCC | 9 cut(s) | 382, 403, 418, 633, 875, 997, 1180, 1499, 1510 |
| BspHI | TCATGA | 1 cut(s) | 2161 |
| BspLI | GGNNCC | 2 cut(s) | 117, 874 |
| BspPI | GGATC | 4 cut(s) | 110, 123, 864, 1790 |
| BspQI | GCTCTTC | 1 cut(s) | 1744 |
| BspTNI | GGTCTC | 1 cut(s) | 1679 |
| BsrDI | GCAATG | 2 cut(s) | 58, 195 |
| BsrFI | RCCGGY | 1 cut(s) | 563 |
| BssAI | RCCGGY | 1 cut(s) | 563 |
| BssECI | CCNNGG | 3 cut(s) | 634, 870, 1540 |
| BssMI | GATC | 5 cut(s) | 40, 115, 856, 1624, 1795 |
| Bst4CI | ACNGT | 1 cut(s) | 1327 |
| Bst6I | CTCTTC | 7 cut(s) | 681, 723, 1232, 1744, 2190, 2205, 2262 |
| BstBAI | YACGTR | 1 cut(s) | 64 |
| BstC8I | GCNNGC | 2 cut(s) | 565, 1282 |
| BstDEI | CTNAG | 6 cut(s) | 127, 665, 1293, 1302, 1761, 2123 |
| BstDSI | CCRYGG | 1 cut(s) | 1540 |
| BstEII | GGTNACC | 1 cut(s) | 1058 |
| BstKTI | GATC | 5 cut(s) | 43, 118, 859, 1627, 1798 |
| BstMAI | GTCTC | 2 cut(s) | 1161, 1679 |
| BstMBI | GATC | 5 cut(s) | 40, 115, 856, 1624, 1795 |
| BstPI | GGTNACC | 1 cut(s) | 1058 |
| BstSCI | CCNGG | 5 cut(s) | 633, 634, 869, 1180, 1886 |
| BstSFI | CTRYAG | 1 cut(s) | 420 |
| BstSLI | GKGCMC | 1 cut(s) | 922 |
| BstSNI | TACGTA | 1 cut(s) | 64 |
| BstV2I | GAAGAC | 4 cut(s) | 828, 1473, 1617, 2094 |
| BstX2I | RGATCY | 1 cut(s) | 115 |
| BstYI | RGATCY | 1 cut(s) | 115 |
| BsuRI | GGCC | 9 cut(s) | 382, 403, 418, 633, 875, 997, 1180, 1499, 1510 |
| BtgI | CCRYGG | 1 cut(s) | 1540 |
| Cac8I | GCNNGC | 2 cut(s) | 565, 1282 |
| CciI | TCATGA | 1 cut(s) | 2161 |
| Cfr10I | RCCGGY | 1 cut(s) | 563 |
| Cfr13I | GGNCC | 7 cut(s) | 380, 416, 632, 873, 1275, 1509, 1812 |
| Cfr9I | CCCGGG | 1 cut(s) | 634 |
| CseI | GACGC | 1 cut(s) | 470 |
| Csp6I | GTAC | 4 cut(s) | 13, 65, 1792, 1908 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1720, 1755 |
| CviQI | GTAC | 4 cut(s) | 13, 65, 1792, 1908 |
| DdeI | CTNAG | 6 cut(s) | 127, 665, 1293, 1302, 1761, 2123 |
| DpnI | GATC | 5 cut(s) | 42, 117, 858, 1626, 1797 |
| DpnII | GATC | 5 cut(s) | 40, 115, 856, 1624, 1795 |
| DraIII | CACNNNGTG | 1 cut(s) | 527 |
| Eam1104I | CTCTTC | 7 cut(s) | 681, 723, 1232, 1744, 2190, 2205, 2262 |
| EarI | CTCTTC | 7 cut(s) | 681, 723, 1232, 1744, 2190, 2205, 2262 |
| EciI | GGCGGA | 1 cut(s) | 128 |
| Eco105I | TACGTA | 1 cut(s) | 64 |
| Eco24I | GRGCYC | 1 cut(s) | 2020 |
| Eco31I | GGTCTC | 1 cut(s) | 1679 |
| Eco47I | GGWCC | 2 cut(s) | 1275, 1812 |
| Eco88I | CYCGRG | 1 cut(s) | 634 |
| Eco91I | GGTNACC | 1 cut(s) | 1058 |
| EcoO109I | RGGNCCY | 1 cut(s) | 873 |
| EcoO65I | GGTNACC | 1 cut(s) | 1058 |
| EcoRI | GAATTC | 1 cut(s) | 232 |
| EcoT22I | ATGCAT | 2 cut(s) | 312, 905 |
| EcoT38I | GRGCYC | 1 cut(s) | 2020 |
| FaqI | GGGAC | 1 cut(s) | 110 |
| FauI | CCCGC | 1 cut(s) | 964 |
| FbaI | TGATCA | 1 cut(s) | 1624 |
| Fnu4HI | GCNGC | 4 cut(s) | 267, 404, 969, 1572 |
| FriOI | GRGCYC | 1 cut(s) | 2020 |
| Fsp4HI | GCNGC | 4 cut(s) | 267, 404, 969, 1572 |
| FspBI | CTAG | 7 cut(s) | 5, 546, 1191, 1854, 1946, 1970, 2136 |
| GluI | GCNGC | 4 cut(s) | 267, 404, 969, 1572 |
| GsaI | CCCAGC | 1 cut(s) | 38 |
| HaeIII | GGCC | 9 cut(s) | 382, 403, 418, 633, 875, 997, 1180, 1499, 1510 |
| HapII | CCGG | 6 cut(s) | 564, 635, 870, 1181, 1799, 1887 |
| HgaI | GACGC | 1 cut(s) | 470 |
| HincII | GTYRAC | 2 cut(s) | 485, 895 |
| HindII | GTYRAC | 2 cut(s) | 485, 895 |
| HindIII | AAGCTT | 1 cut(s) | 1222 |
| HinfI | GANTC | 9 cut(s) | 452, 851, 1036, 1185, 1920, 2069, 2099, 2228, 2244 |
| HpaII | CCGG | 6 cut(s) | 564, 635, 870, 1181, 1799, 1887 |
| HphI | GGTGA | 2 cut(s) | 1711, 2066 |
| Hpy166II | GTNNAC | 2 cut(s) | 485, 895 |
| Hpy188I | TCNGA | 4 cut(s) | 856, 2074, 2182, 2233 |
| Hpy8I | GTNNAC | 2 cut(s) | 485, 895 |
| HpyAV | CCTTC | 9 cut(s) | 18, 310, 371, 505, 676, 1084, 1634, 2007, 2234 |
| HpyCH4III | ACNGT | 1 cut(s) | 1327 |
| HpyCH4IV | ACGT | 1 cut(s) | 63 |
| HpyF3I | CTNAG | 6 cut(s) | 127, 665, 1293, 1302, 1761, 2123 |
| HpySE526I | ACGT | 1 cut(s) | 63 |
| KroI | GCCGGC | 1 cut(s) | 563 |
| KroNI | GCCGGC | 1 cut(s) | 565 |
| Ksp22I | TGATCA | 1 cut(s) | 1624 |
| Kzo9I | GATC | 5 cut(s) | 40, 115, 856, 1624, 1795 |
| LguI | GCTCTTC | 1 cut(s) | 1744 |
| LmnI | GCTCC | 2 cut(s) | 278, 1384 |
| LpnPI | CCDG | 7 cut(s) | 20, 577, 648, 883, 1194, 1812, 1900 |
| LweI | GCATC | 7 cut(s) | 232, 443, 468, 490, 541, 754, 1939 |
| MaeI | CTAG | 7 cut(s) | 5, 546, 1191, 1854, 1946, 1970, 2136 |
| MaeII | ACGT | 1 cut(s) | 63 |
| MaeIII | GTNAC | 7 cut(s) | 340, 773, 940, 1058, 1186, 1354, 1699 |
| MalI | GATC | 5 cut(s) | 42, 117, 858, 1626, 1797 |
| MboI | GATC | 5 cut(s) | 40, 115, 856, 1624, 1795 |
| MfeI | CAATTG | 1 cut(s) | 459 |
| MflI | RGATCY | 1 cut(s) | 115 |
| MhlI | GDGCHC | 3 cut(s) | 922, 1337, 2020 |
| MlyI | GAGTC | 5 cut(s) | 1194, 2063, 2108, 2237, 2253 |
| MmeI | TCCRAC | 4 cut(s) | 70, 674, 1783, 2256 |
| Mph1103I | ATGCAT | 2 cut(s) | 312, 905 |
| MroNI | GCCGGC | 1 cut(s) | 563 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1614 |
| MseI | TTAA | 6 cut(s) | 288, 495, 810, 1389, 1473, 1871 |
| MslI | CAYNNNNRTG | 2 cut(s) | 72, 1888 |
| MspI | CCGG | 6 cut(s) | 564, 635, 870, 1181, 1799, 1887 |
| MspR9I | CCNGG | 5 cut(s) | 635, 636, 871, 1182, 1888 |
| MunI | CAATTG | 1 cut(s) | 459 |
| Mva1269I | GAATGC | 3 cut(s) | 567, 1100, 1481 |
| NaeI | GCCGGC | 1 cut(s) | 565 |
| NciI | CCSGG | 5 cut(s) | 635, 636, 871, 1182, 1888 |
| NdeII | GATC | 5 cut(s) | 40, 115, 856, 1624, 1795 |
| NgoMIV | GCCGGC | 1 cut(s) | 563 |
| NlaIV | GGNNCC | 2 cut(s) | 117, 874 |
| NmuCI | GTSAC | 4 cut(s) | 773, 940, 1186, 1699 |
| NsiI | ATGCAT | 2 cut(s) | 312, 905 |
| PagI | TCATGA | 1 cut(s) | 2161 |
| PciSI | GCTCTTC | 1 cut(s) | 1744 |
| PctI | GAATGC | 3 cut(s) | 567, 1100, 1481 |
| PdiI | GCCGGC | 1 cut(s) | 565 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1614 |
| PfeI | GAWTC | 4 cut(s) | 452, 851, 1036, 1920 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1696 |
| PkrI | GCNGC | 4 cut(s) | 268, 405, 970, 1573 |
| PleI | GAGTC | 5 cut(s) | 1193, 2063, 2107, 2236, 2252 |
| PpsI | GAGTC | 5 cut(s) | 1193, 2063, 2107, 2236, 2252 |
| Ppu21I | YACGTR | 1 cut(s) | 64 |
| PshBI | ATTAAT | 1 cut(s) | 495 |
| PspEI | GGTNACC | 1 cut(s) | 1058 |
| PspFI | CCCAGC | 1 cut(s) | 34 |
| PspN4I | GGNNCC | 2 cut(s) | 117, 874 |
| PspPI | GGNCC | 7 cut(s) | 380, 416, 632, 873, 1275, 1509, 1812 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1577, 1609 |
| PsuI | RGATCY | 1 cut(s) | 115 |
| RsaI | GTAC | 4 cut(s) | 14, 66, 1793, 1909 |
| RsaNI | GTAC | 4 cut(s) | 13, 65, 1792, 1908 |
| RseI | CAYNNNNRTG | 2 cut(s) | 72, 1888 |
| SapI | GCTCTTC | 1 cut(s) | 1744 |
| SaqAI | TTAA | 6 cut(s) | 288, 495, 810, 1389, 1473, 1871 |
| SatI | GCNGC | 4 cut(s) | 267, 404, 969, 1572 |
| Sau3AI | GATC | 5 cut(s) | 40, 115, 856, 1624, 1795 |
| Sau96I | GGNCC | 7 cut(s) | 380, 416, 632, 873, 1275, 1509, 1812 |
| ScaI | AGTACT | 1 cut(s) | 1909 |
| SchI | GAGTC | 5 cut(s) | 1194, 2063, 2108, 2237, 2253 |
| ScrFI | CCNGG | 5 cut(s) | 635, 636, 871, 1182, 1888 |
| SduI | GDGCHC | 3 cut(s) | 922, 1337, 2020 |
| SfaNI | GCATC | 7 cut(s) | 232, 443, 468, 490, 541, 754, 1939 |
| SfcI | CTRYAG | 1 cut(s) | 420 |
| SinI | GGWCC | 2 cut(s) | 1275, 1812 |
| SmaI | CCCGGG | 1 cut(s) | 636 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 72, 1888 |
| SmlI | CTYRAG | 5 cut(s) | 713, 1454, 1682, 2019, 2031 |
| SmoI | CTYRAG | 5 cut(s) | 713, 1454, 1682, 2019, 2031 |
| SnaBI | TACGTA | 1 cut(s) | 64 |
| SsiI | CCGC | 8 cut(s) | 113, 267, 404, 617, 968, 971, 1278, 1571 |
| SspI | AATATT | 1 cut(s) | 493 |
| SspMI | CTAG | 7 cut(s) | 5, 546, 1191, 1854, 1946, 1970, 2136 |
| StyD4I | CCNGG | 5 cut(s) | 633, 634, 869, 1180, 1886 |
| TaaI | ACNGT | 1 cut(s) | 1327 |
| TaiI | ACGT | 1 cut(s) | 66 |
| TaqI | TCGA | 2 cut(s) | 643, 1914 |
| TaqII | GACCGA | 2 cut(s) | 776, 792 |
| TatI | WGTACW | 2 cut(s) | 12, 1907 |
| TauI | GCSGC | 4 cut(s) | 269, 406, 971, 1574 |
| TfiI | GAWTC | 4 cut(s) | 452, 851, 1036, 1920 |
| Tru1I | TTAA | 6 cut(s) | 288, 495, 810, 1389, 1473, 1871 |
| Tru9I | TTAA | 6 cut(s) | 288, 495, 810, 1389, 1473, 1871 |
| TseFI | GTSAC | 4 cut(s) | 773, 940, 1186, 1699 |
| Tsp45I | GTSAC | 4 cut(s) | 773, 940, 1186, 1699 |
| TspGWI | ACGGA | 2 cut(s) | 254, 2207 |
| TspMI | CCCGGG | 1 cut(s) | 634 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1696 |
| VpaK11BI | GGWCC | 2 cut(s) | 1275, 1812 |
| VspI | ATTAAT | 1 cut(s) | 495 |
| XapI | RAATTY | 3 cut(s) | 232, 976, 1070 |
| XbaI | TCTAGA | 1 cut(s) | 2135 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1005 |
| XmaI | CCCGGG | 1 cut(s) | 634 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1614 |
| XspI | CTAG | 7 cut(s) | 5, 546, 1191, 1854, 1946, 1970, 2136 |
| ZrmI | AGTACT | 1 cut(s) | 1909 |
| Zsp2I | ATGCAT | 2 cut(s) | 312, 905 |