RchiOBHm_Chr4g0430441

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000698
Physical Location & Seq
Forward (+)
54945718 .. 54946878
1161 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39916

Sequence Viewer

Length: 171 bp
ATGGCGGGTACTACATCTTCCTCGGCATCTAATGCAATGTCGGAGATGGATTCATCATTGAAGCATGGTTCAGGTGATATTGGATGGGAATATGCGGAGTTGGCGGATGCTTCAAACTTGGATAGGTTGAAGTCATATTGCCCACATCAAGGGAAATGTGGCTCCTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

56

Amino Acids

5.85

Weight (kDa)

4.96

Isoelectric Point (pI)

36.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 95, 104
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 149
AgsI TTSAA 3 cut(s) 61, 114, 130
AsuHPI GGTGA 1 cut(s) 86
BarI GAAGNNNNNNTAC 1 cut(s) 33
BccI CCATC 2 cut(s) 40, 78
BmiI GGNNCC 1 cut(s) 163
BmsI GCATC 2 cut(s) 35, 97
BsaJI CCNNGG 1 cut(s) 21
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse3DI GCAATG 1 cut(s) 42
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 2 cut(s) 89, 112
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMI GCAATG 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 149
BspACI CCGC 3 cut(s) 5, 95, 104
BspLI GGNNCC 1 cut(s) 163
BsrDI GCAATG 1 cut(s) 42
BssECI CCNNGG 1 cut(s) 21
BstAPI GCANNNNNTGC 1 cut(s) 32
BstF5I GGATG 2 cut(s) 89, 112
BstMWI GCNNNNNNNGC 2 cut(s) 32, 101
BtsCI GGATG 2 cut(s) 89, 112
Csp6I GTAC 1 cut(s) 9
CviAII CATG 1 cut(s) 65
CviJI RGCY 1 cut(s) 162
CviKI_1 RGCY 1 cut(s) 162
CviQI GTAC 1 cut(s) 9
EciI GGCGGA 1 cut(s) 119
FaeI CATG 1 cut(s) 68
FaiI YATR 3 cut(s) 66, 93, 136
FatI CATG 1 cut(s) 64
FokI GGATG 2 cut(s) 96, 119
Hin1II CATG 1 cut(s) 68
HinfI GANTC 1 cut(s) 50
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 43
HpyCH4V TGCA 1 cut(s) 35
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 101
Hsp92II CATG 1 cut(s) 68
LmnI GCTCC 1 cut(s) 167
LpnPI CCDG 1 cut(s) 57
LweI GCATC 2 cut(s) 35, 97
MboII GAAGA 1 cut(s) 9
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 1 cut(s) 31
MwoI GCNNNNNNNGC 2 cut(s) 32, 101
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 50
PspN4I GGNNCC 1 cut(s) 163
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
SetI ASST 2 cut(s) 76, 128
SfaNI GCATC 2 cut(s) 35, 97
SgeI CNNG 6 cut(s) 18, 34, 77, 84, 130, 161
SsiI CCGC 3 cut(s) 5, 95, 104
TfiI GAWTC 1 cut(s) 50
TspDTI ATGAA 1 cut(s) 42
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.