Rroxscaffold_6G00405690

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000698
Physical Location & Seq
Forward (+)
28142021 .. 28143011
991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00405690.1

Sequence Viewer

Length: 777 bp
ATGATTACTAGTGATGAATGGAATGAAAGCAAGCATGCAAAGAGTGTAGAGGGGAAGGCAGCTGTGAATATCGCTTTGAGTGCTTCTTTTTGGAATGGGGTAAGTCTTTGCTTTAAGGTGTTTGCCCCTTTAGTCAAGGTGCTTCGCCTTGTTGATGGGGATAGAAAACCATCAATGGGCTTTGTGTATGGAGAACGACTTAGAGCCAAAGAGGAGACTAAAATGGAATTCAAAGATCAAGAAGCTCACTATCGTCCAATCCTTGACATTGCTGATGGAAAAGCCCTTGATCGACTTGATAGTCCATTGCATTTAGCGGGCTACCTCTTGAACCCTTACTACACATATGCCAATCTAAGCATTGAGAATGATAATGTGGTCATGGATGGGTTCTTCACTTGTGTTGAGGTATTCTTTCCCGATGACATTCAAACTCAAAGTTTGGTGACAAATGTAGAATTGCACAAGTATTTAAAGAAAGAGGGTGGATTTGGAAGAGCTTTGGCTAAGGCAAGATGCGCACAAAATGATGACAATTATAATCCAGTTTTGTGGTGGAATATTTATGGAAACCTTGTACCAAAATTTCAAAGTATGGCTAAAAGGATACTTTCATTGACTACAAGCTCATCTGGATGTGAGAGAAATTGGAGCGCTTTTGAGGGGATCCATACAAAGAAAAGGAATAGACTAGATACAATAAGGTTAAACAATTTAGTCTATGTCCAATTCAATGTCAAGATCATCAACAAGGAGAGAAGAATGTGGATGTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

258

Amino Acids

29.7

Weight (kDa)

8.89

Isoelectric Point (pI)

36.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 172 - 245 7.4e-11 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 540
AasI GACNNNNNNGTC 1 cut(s) 300
Acc16I TGCGCA 1 cut(s) 520
AciI CCGC 1 cut(s) 317
AclWI GGATC 2 cut(s) 661, 674
AcsI RAATTY 2 cut(s) 227, 584
AfaI GTAC 1 cut(s) 579
AfeI AGCGCT 1 cut(s) 655
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 5 cut(s) 232, 331, 431, 590, 733
AhlI ACTAGT 1 cut(s) 8
AluBI AGCT 4 cut(s) 62, 245, 500, 627
AluI AGCT 4 cut(s) 62, 245, 500, 627
Alw26I GTCTC 1 cut(s) 209
AlwI GGATC 2 cut(s) 661, 674
Aor51HI AGCGCT 1 cut(s) 655
ApeKI GCWGC 1 cut(s) 59
ApoI RAATTY 2 cut(s) 227, 584
AspLEI GCGC 2 cut(s) 521, 656
AsuHPI GGTGA 1 cut(s) 457
BamHI GGATCC 1 cut(s) 666
BbvI GCAGC 1 cut(s) 71
BccI CCATC 4 cut(s) 149, 178, 269, 380
BciVI GTATCC 1 cut(s) 600
BcoDI GTCTC 1 cut(s) 209
BcuI ACTAGT 1 cut(s) 8
BfaI CTAG 2 cut(s) 9, 692
BfoI RGCGCY 1 cut(s) 657
BfuI GTATCC 1 cut(s) 600
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 668
BmsI GCATC 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 507
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 545
Bse3DI GCAATG 2 cut(s) 267, 305
BseGI GGATG 3 cut(s) 391, 641, 774
BseLI CCNNNNNNNGG 1 cut(s) 176
BseMI GCAATG 2 cut(s) 267, 305
BseNI ACTGG 1 cut(s) 545
BseRI GAGGAG 1 cut(s) 227
BseXI GCAGC 1 cut(s) 71
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 1 cut(s) 209
Bsp143I GATC 4 cut(s) 235, 289, 666, 741
BspACI CCGC 1 cut(s) 317
BspLI GGNNCC 1 cut(s) 668
BspPI GGATC 2 cut(s) 661, 674
BspQI GCTCTTC 1 cut(s) 490
BsrDI GCAATG 2 cut(s) 267, 305
BsrI ACTGG 1 cut(s) 545
BssMI GATC 4 cut(s) 235, 289, 666, 741
Bst6I CTCTTC 1 cut(s) 490
BstC8I GCNNGC 3 cut(s) 32, 36, 319
BstDEI CTNAG 3 cut(s) 200, 356, 507
BstF5I GGATG 3 cut(s) 391, 641, 774
BstH2I RGCGCY 1 cut(s) 657
BstHHI GCGC 2 cut(s) 521, 656
BstKTI GATC 4 cut(s) 238, 292, 669, 744
BstMAI GTCTC 1 cut(s) 209
BstMBI GATC 4 cut(s) 235, 289, 666, 741
BstMWI GCNNNNNNNGC 2 cut(s) 80, 518
BstNSI RCATGY 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 666
BstXI CCANNNNNNTGG 1 cut(s) 552
BstYI RGATCY 1 cut(s) 666
BsuI GTATCC 1 cut(s) 600
BtsCI GGATG 3 cut(s) 391, 641, 774
Cac8I GCNNGC 3 cut(s) 32, 36, 319
CfoI GCGC 2 cut(s) 521, 656
Csp6I GTAC 1 cut(s) 578
CviAII CATG 2 cut(s) 35, 382
CviQI GTAC 1 cut(s) 578
DdeI CTNAG 3 cut(s) 200, 356, 507
DpnI GATC 4 cut(s) 237, 291, 668, 743
DpnII GATC 4 cut(s) 235, 289, 666, 741
DraI TTTAAA 1 cut(s) 474
DrdI GACNNNNNNGTC 1 cut(s) 300
DseDI GACNNNNNNGTC 1 cut(s) 300
Eam1104I CTCTTC 1 cut(s) 490
EarI CTCTTC 1 cut(s) 490
Eco47III AGCGCT 1 cut(s) 655
EcoRI GAATTC 1 cut(s) 227
FaeI CATG 2 cut(s) 38, 385
FatI CATG 2 cut(s) 34, 381
FauI CCCGC 1 cut(s) 310
FauNDI CATATG 1 cut(s) 346
Fnu4HI GCNGC 1 cut(s) 60
FokI GGATG 2 cut(s) 398, 648
Fsp4HI GCNGC 1 cut(s) 60
FspAI RTGCGCAY 1 cut(s) 520
FspBI CTAG 2 cut(s) 9, 692
FspI TGCGCA 1 cut(s) 520
GlaI GCGC 2 cut(s) 520, 655
GluI GCNGC 1 cut(s) 60
HaeII RGCGCY 1 cut(s) 657
HhaI GCGC 2 cut(s) 521, 656
Hin1II CATG 2 cut(s) 38, 385
Hin6I GCGC 2 cut(s) 519, 654
HinP1I GCGC 2 cut(s) 519, 654
HphI GGTGA 1 cut(s) 457
Hpy188III TCNNGA 5 cut(s) 239, 328, 419, 633, 739
HpyAV CCTTC 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 38, 310, 463
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 518
HpyF3I CTNAG 3 cut(s) 200, 356, 507
Hsp92II CATG 2 cut(s) 38, 385
HspAI GCGC 2 cut(s) 519, 654
Kzo9I GATC 4 cut(s) 235, 289, 666, 741
LguI GCTCTTC 1 cut(s) 490
LmnI GCTCC 1 cut(s) 651
LpnPI CCDG 2 cut(s) 558, 618
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 1 cut(s) 506
MaeI CTAG 2 cut(s) 9, 692
MaeIII GTNAC 1 cut(s) 445
MalI GATC 4 cut(s) 237, 291, 668, 743
MboI GATC 4 cut(s) 235, 289, 666, 741
MboII GAAGA 3 cut(s) 385, 507, 771
MflI RGATCY 1 cut(s) 666
MluCI AATT 7 cut(s) 227, 458, 535, 584, 646, 712, 728
MnlI CCTC 6 cut(s) 43, 205, 335, 400, 475, 655
MseI TTAA 4 cut(s) 114, 473, 707, 775
MslI CAYNNNNRTG 1 cut(s) 634
MspA1I CMGCKG 1 cut(s) 62
MwoI GCNNNNNNNGC 2 cut(s) 80, 518
NdeI CATATG 1 cut(s) 346
NdeII GATC 4 cut(s) 235, 289, 666, 741
NlaIII CATG 2 cut(s) 38, 385
NlaIV GGNNCC 1 cut(s) 668
NmuCI GTSAC 1 cut(s) 445
NsbI TGCGCA 1 cut(s) 520
NspI RCATGY 1 cut(s) 38
PaeI GCATGC 1 cut(s) 38
PciSI GCTCTTC 1 cut(s) 490
PkrI GCNGC 1 cut(s) 61
PsiI TTATAA 1 cut(s) 540
PspN4I GGNNCC 1 cut(s) 668
PsrI GAACNNNNNNTAC 2 cut(s) 323, 355
PsuI RGATCY 1 cut(s) 666
PvuII CAGCTG 1 cut(s) 62
RsaI GTAC 1 cut(s) 579
RsaNI GTAC 1 cut(s) 578
RseI CAYNNNNRTG 1 cut(s) 634
SapI GCTCTTC 1 cut(s) 490
SaqAI TTAA 4 cut(s) 114, 473, 707, 775
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 4 cut(s) 235, 289, 666, 741
SfaNI GCATC 1 cut(s) 506
SmiMI CAYNNNNRTG 1 cut(s) 634
SpeI ACTAGT 1 cut(s) 8
SphI GCATGC 1 cut(s) 38
Sse9I AATT 7 cut(s) 227, 458, 535, 584, 646, 712, 728
SsiI CCGC 1 cut(s) 317
SspI AATATT 1 cut(s) 562
SspMI CTAG 2 cut(s) 9, 692
TaqI TCGA 1 cut(s) 292
TasI AATT 7 cut(s) 227, 458, 535, 584, 646, 712, 728
Tru1I TTAA 4 cut(s) 114, 473, 707, 775
Tru9I TTAA 4 cut(s) 114, 473, 707, 775
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 1 cut(s) 59
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 3 cut(s) 30, 39, 603
XapI RAATTY 2 cut(s) 227, 584
XceI RCATGY 1 cut(s) 38
XcmI CCANNNNNNNNNTGG 1 cut(s) 552
XspI CTAG 2 cut(s) 9, 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.