Rmu_sc0023555.1_g000001

source UniProtKB

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023555.1
Physical Location & Seq
Forward (+)
43 .. 378
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023555.1_g000001.1.cds

Sequence Viewer

Length: 336 bp
atgcataggatgaagcaacacattgccaacatcaagggaaatgttgccgcatgcaagaattgtttggatgtcgataaagctaaatgtatagccgcaatagaaggagcaaaaattaagataaagcagaaggatatgcatgagaaggaagtgagggaagaagttgaagtttctcaatcacatgatgtagaagatgtagaaattgaagggccaagtttctcaagaaaaaggccgcactttcttcggcctatagacaagtttgcatcttcaatcactccttattcttcaattgatggaagcaagagaatgcgtcaacaaaacattaatgatgtcatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.64

Weight (kDa)

8.81

Isoelectric Point (pI)

72.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 48, 93, 230
AgsI TTSAA 4 cut(s) 164, 203, 267, 285
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
AoxI GGCC 3 cut(s) 206, 227, 242
AseI ATTAAT 1 cut(s) 321
AspS9I GGNCC 1 cut(s) 206
BccI CCATC 1 cut(s) 284
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 3 cut(s) 48, 93, 230
BlsI GCNGC 3 cut(s) 49, 94, 231
BmgT120I GGNCC 1 cut(s) 206
BmsI GCATC 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 21
BseGI GGATG 2 cut(s) 15, 73
BseMI GCAATG 1 cut(s) 21
BshFI GGCC 3 cut(s) 208, 229, 244
BsmI GAATGC 1 cut(s) 309
BsnI GGCC 3 cut(s) 208, 229, 244
BspACI CCGC 3 cut(s) 48, 93, 230
BspANI GGCC 3 cut(s) 208, 229, 244
BsrDI GCAATG 1 cut(s) 21
BstC8I GCNNGC 1 cut(s) 52
BstF5I GGATG 2 cut(s) 15, 73
BstNSI RCATGY 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 246
BsuRI GGCC 3 cut(s) 208, 229, 244
BtsCI GGATG 2 cut(s) 15, 73
Cac8I GCNNGC 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 206
CseI GACGC 1 cut(s) 296
CviAII CATG 3 cut(s) 51, 137, 179
CviJI RGCY 5 cut(s) 80, 92, 208, 229, 244
CviKI_1 RGCY 5 cut(s) 80, 92, 208, 229, 244
EcoT22I ATGCAT 2 cut(s) 6, 138
FaeI CATG 3 cut(s) 54, 140, 182
FaiI YATR 7 cut(s) 6, 52, 89, 134, 138, 180, 248
FatI CATG 3 cut(s) 50, 136, 178
Fnu4HI GCNGC 3 cut(s) 48, 93, 230
FokI GGATG 2 cut(s) 22, 80
Fsp4HI GCNGC 3 cut(s) 48, 93, 230
GluI GCNGC 3 cut(s) 48, 93, 230
HaeIII GGCC 3 cut(s) 208, 229, 244
HgaI GACGC 1 cut(s) 296
Hin1II CATG 3 cut(s) 54, 140, 182
HincII GTYRAC 1 cut(s) 311
HindII GTYRAC 1 cut(s) 311
Hpy166II GTNNAC 1 cut(s) 311
Hpy188III TCNNGA 1 cut(s) 219
Hpy8I GTNNAC 1 cut(s) 311
HpyAV CCTTC 4 cut(s) 95, 121, 136, 197
HpyCH4V TGCA 4 cut(s) 4, 54, 136, 260
Hsp92II CATG 3 cut(s) 54, 140, 182
LmnI GCTCC 1 cut(s) 104
LweI GCATC 1 cut(s) 269
MboII GAAGA 5 cut(s) 167, 200, 230, 255, 273
MfeI CAATTG 1 cut(s) 285
MluCI AATT 4 cut(s) 58, 111, 198, 285
MnlI CCTC 1 cut(s) 144
Mph1103I ATGCAT 2 cut(s) 6, 138
MseI TTAA 2 cut(s) 114, 321
MunI CAATTG 1 cut(s) 285
Mva1269I GAATGC 1 cut(s) 309
NlaIII CATG 3 cut(s) 54, 140, 182
NsiI ATGCAT 2 cut(s) 6, 138
NspI RCATGY 1 cut(s) 54
PaeI GCATGC 1 cut(s) 54
PctI GAATGC 1 cut(s) 309
PkrI GCNGC 3 cut(s) 49, 94, 231
PshBI ATTAAT 1 cut(s) 321
PspPI GGNCC 1 cut(s) 206
SaqAI TTAA 2 cut(s) 114, 321
SatI GCNGC 3 cut(s) 48, 93, 230
Sau96I GGNCC 1 cut(s) 206
SetI ASST 1 cut(s) 82
SfaNI GCATC 1 cut(s) 269
SfcI CTRYAG 1 cut(s) 246
SgeI CNNG 9 cut(s) 46, 63, 67, 149, 191, 222, 231, 265, 310
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
SphI GCATGC 1 cut(s) 54
Sse9I AATT 4 cut(s) 58, 111, 198, 285
SsiI CCGC 3 cut(s) 48, 93, 230
TaqI TCGA 1 cut(s) 72
TasI AATT 4 cut(s) 58, 111, 198, 285
TauI GCSGC 3 cut(s) 50, 95, 232
Tru1I TTAA 2 cut(s) 114, 321
Tru9I TTAA 2 cut(s) 114, 321
TspDTI ATGAA 1 cut(s) 26
VspI ATTAAT 1 cut(s) 321
XceI RCATGY 1 cut(s) 54
Zsp2I ATGCAT 2 cut(s) 6, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.