FvH4_6g28272

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000698
Physical Location & Seq
Reverse (-)
21760937 .. 21762287
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g28272.t1

Sequence Viewer

Length: 705 bp
ATGCTTCAAGGAATTGACACTCAACCTAGATTCAAAGGAGTAATTGAGAAGGCAAAGACTTTCACCATCTACATTTATGCATATCACAAGACTTTGGCAATGATGAGAAAGTTCACAAAGAAAAGAGACATAGTGAGGCAGGGAGTCACAAGATTTGCAACCGCTTTTCTCACTTTGCAAAGCTTGATGGAGAAGAAGAATGACTTGAGAGAATTGCACAAGTATTTGAAGAAAGAGGGTGTATTTGGTAGAGCTTTGGCTAAGGCGGGATGCGCACAAGATAATGAAAATTATAATCCGGTTGGTTGGTGGAGTATTTATGGAAACCAAGTACCGCTTTTGCAAAGAATGGCTAAAAGACTACTTGGTTTGACCACAAGTTCATCCAGATGTGAAAGAAATTGGAGTACTTTTGAGGGGATACATACAAAGAAAAGGAATAGACTAGATACAACAAGGTTGAACAATCTAGTGTATGTCCAATTCAATGCAAGGATTATGAACAAGAAAAGAAGAGAGAAAGAGAAGAATGTGGATGTACTACTTGCTAGTGAAGCAACTGTGGCACAAGGATGGATTGTTGATGGTGGTGATGAAGATGTTGAGTCGGATCTTAATAGTGAAATGGTTGGAGATGATTTGGGAGTGGGTAGTGGTTTAGAGCCTCGGAGAAGTTCTACACTTCAAGAAAAGAGAACTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

235

Amino Acids

26.83

Weight (kDa)

9.82

Isoelectric Point (pI)

44.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimer_Tnp_hAT PF05699 83 - 163 1.4e-13 hAT family C-terminal dimerisation region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 294
Acc16I TGCGCA 1 cut(s) 274
AciI CCGC 3 cut(s) 162, 266, 335
AclWI GGATC 1 cut(s) 618
AfaI GTAC 3 cut(s) 333, 409, 540
AgsI TTSAA 6 cut(s) 8, 34, 229, 463, 487, 686
AluBI AGCT 2 cut(s) 183, 254
AluI AGCT 2 cut(s) 183, 254
Alw26I GTCTC 1 cut(s) 120
AlwI GGATC 1 cut(s) 618
AspLEI GCGC 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 55, 602
BccI CCATC 4 cut(s) 74, 181, 567, 578
BciVI GTATCC 1 cut(s) 414
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 4 cut(s) 27, 446, 470, 549
BfuI GTATCC 1 cut(s) 414
BmcAI AGTACT 1 cut(s) 409
BmsI GCATC 1 cut(s) 260
Bpu10I CCTNAGC 1 cut(s) 261
BpuEI CTTGAG 1 cut(s) 226
BsaJI CCNNGG 1 cut(s) 665
BsaWI WCCGGW 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 665
BseGI GGATG 4 cut(s) 275, 383, 541, 578
BseMI GCAATG 1 cut(s) 105
BsiSI CCGG 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 610
BspACI CCGC 3 cut(s) 162, 266, 335
BspHI TCATGA 1 cut(s) 701
BspPI GGATC 1 cut(s) 618
BsrDI GCAATG 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 665
BssMI GATC 1 cut(s) 610
Bst4CI ACNGT 1 cut(s) 562
Bst6I CTCTTC 1 cut(s) 508
BstDEI CTNAG 1 cut(s) 261
BstF5I GGATG 4 cut(s) 275, 383, 541, 578
BstHHI GCGC 1 cut(s) 275
BstKTI GATC 1 cut(s) 613
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 610
BstMWI GCNNNNNNNGC 3 cut(s) 272, 554, 563
BstX2I RGATCY 1 cut(s) 610
BstYI RGATCY 1 cut(s) 610
BsuI GTATCC 1 cut(s) 414
BtsCI GGATG 4 cut(s) 275, 383, 541, 578
CciI TCATGA 1 cut(s) 701
CfoI GCGC 1 cut(s) 275
Csp6I GTAC 3 cut(s) 332, 408, 539
CviAII CATG 1 cut(s) 702
CviJI RGCY 5 cut(s) 183, 254, 260, 353, 664
CviKI_1 RGCY 5 cut(s) 183, 254, 260, 353, 664
CviQI GTAC 3 cut(s) 332, 408, 539
DdeI CTNAG 1 cut(s) 261
DpnI GATC 1 cut(s) 612
DpnII GATC 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 508
EarI CTCTTC 1 cut(s) 508
EcoT22I ATGCAT 1 cut(s) 82
FaeI CATG 1 cut(s) 705
FaiI YATR 9 cut(s) 78, 82, 131, 294, 321, 426, 477, 500, 703
FalI AAGNNNNNCTT 4 cut(s) 188, 220, 321, 353
FatI CATG 1 cut(s) 701
FauI CCCGC 1 cut(s) 259
FokI GGATG 4 cut(s) 282, 370, 548, 585
FspAI RTGCGCAY 1 cut(s) 274
FspBI CTAG 4 cut(s) 27, 446, 470, 549
FspI TGCGCA 1 cut(s) 274
GlaI GCGC 1 cut(s) 274
HapII CCGG 1 cut(s) 299
HhaI GCGC 1 cut(s) 275
Hin1II CATG 1 cut(s) 705
Hin6I GCGC 1 cut(s) 273
HinP1I GCGC 1 cut(s) 273
HindIII AAGCTT 1 cut(s) 181
HinfI GANTC 3 cut(s) 30, 144, 605
HpaII CCGG 1 cut(s) 299
HphI GGTGA 2 cut(s) 55, 602
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 2 cut(s) 610, 669
Hpy188III TCNNGA 3 cut(s) 387, 686, 702
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 1 cut(s) 43
HpyCH4III ACNGT 1 cut(s) 562
HpyCH4V TGCA 6 cut(s) 80, 158, 178, 217, 343, 491
HpyF10VI GCNNNNNNNGC 3 cut(s) 272, 554, 563
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 1 cut(s) 705
HspAI GCGC 1 cut(s) 273
Kzo9I GATC 1 cut(s) 610
LpnPI CCDG 3 cut(s) 125, 312, 400
LweI GCATC 1 cut(s) 260
MaeI CTAG 4 cut(s) 27, 446, 470, 549
MaeIII GTNAC 1 cut(s) 145
MalI GATC 1 cut(s) 612
MboI GATC 1 cut(s) 610
MboII GAAGA 6 cut(s) 205, 208, 241, 525, 538, 608
MflI RGATCY 1 cut(s) 610
MluCI AATT 6 cut(s) 12, 42, 212, 289, 400, 482
MlyI GAGTC 2 cut(s) 153, 614
MmeI TCCRAC 2 cut(s) 588, 610
MnlI CCTC 4 cut(s) 129, 229, 409, 675
Mph1103I ATGCAT 1 cut(s) 82
MseI TTAA 1 cut(s) 615
MslI CAYNNNNRTG 2 cut(s) 388, 571
MspI CCGG 1 cut(s) 299
MwoI GCNNNNNNNGC 3 cut(s) 272, 554, 563
NdeII GATC 1 cut(s) 610
NlaIII CATG 1 cut(s) 705
NmuCI GTSAC 1 cut(s) 145
NsbI TGCGCA 1 cut(s) 274
NsiI ATGCAT 1 cut(s) 82
PagI TCATGA 1 cut(s) 701
PfeI GAWTC 1 cut(s) 30
PleI GAGTC 2 cut(s) 152, 613
PpsI GAGTC 2 cut(s) 152, 613
PsiI TTATAA 1 cut(s) 294
PsuI RGATCY 1 cut(s) 610
RsaI GTAC 3 cut(s) 333, 409, 540
RsaNI GTAC 3 cut(s) 332, 408, 539
RseI CAYNNNNRTG 2 cut(s) 388, 571
SaqAI TTAA 1 cut(s) 615
Sau3AI GATC 1 cut(s) 610
ScaI AGTACT 1 cut(s) 409
SchI GAGTC 2 cut(s) 153, 614
SetI ASST 4 cut(s) 28, 185, 256, 461
SfaNI GCATC 1 cut(s) 260
SmiMI CAYNNNNRTG 2 cut(s) 388, 571
SmlI CTYRAG 1 cut(s) 205
SmoI CTYRAG 1 cut(s) 205
Sse9I AATT 6 cut(s) 12, 42, 212, 289, 400, 482
SsiI CCGC 3 cut(s) 162, 266, 335
SspMI CTAG 4 cut(s) 27, 446, 470, 549
TaaI ACNGT 1 cut(s) 562
TasI AATT 6 cut(s) 12, 42, 212, 289, 400, 482
TatI WGTACW 2 cut(s) 407, 538
TfiI GAWTC 1 cut(s) 30
Tru1I TTAA 1 cut(s) 615
Tru9I TTAA 1 cut(s) 615
TseFI GTSAC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 145
TspDTI ATGAA 5 cut(s) 300, 372, 515, 609, 690
XspI CTAG 4 cut(s) 27, 446, 470, 549
ZrmI AGTACT 1 cut(s) 409
Zsp2I ATGCAT 1 cut(s) 82
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.