Rmu_sc0022773.1_g000002

source UniProtKB

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0022773.1
OG0000698
Physical Location & Seq
Forward (+)
657 .. 959
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0022773.1_g000002.1.cds

Sequence Viewer

Length: 303 bp
atgcgtcaacaaaacattaatgatgccatttggaaggaaagaacacatagtgtgcatcaatggttggctaggtgggtgtatgaagccggcattccatttcatgccattgataatgatagcttcaaaagatttgtagaagcggttggtcaatttggcccaggtcaccgacctccaactcaataccaactaagagagccattgttgaaggaagaggttgagaggacgaaaaattcactcaagaagcatgaagaagagtgggcaaagaatgcttgttccattatgaccgatgcttggagtgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF659 Dimer_Tnp_hAT

Protein Analysis

100

Amino Acids

11.86

Weight (kDa)

6.51

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000698)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G43260 AT5G31412
fragaria_vesca FvH4_2g24751 FvH4_3g29751 FvH4_3g29752 FvH4_3g32705 FvH4_4g20841 FvH4_5g39742 FvH4_6g06672 FvH4_6g28272 FvH4_6g28273 FvH4_7g00215
malus_domestica MD07G1147000.v1.1
prunus_persica Prupe.4G255800_v2.0.a1
pyrus_communis pycom09g15950 pycom10g13140
rosa_chinensis RchiOBHm_Chr1g0314441 RchiOBHm_Chr1g0314451 RchiOBHm_Chr4g0430441 RchiOBHm_Chr4g0430831 RchiOBHm_Chr5g0003001 RchiOBHm_Chr5g0033441 RchiOBHm_Chr6g0251571 RchiOBHm_Chr6g0288501
rosa_multiflora Rmu_co8007098.1_g000001 Rmu_co8211970.1_g000002 Rmu_sc0000146.1_g000031 Rmu_sc0000555.1_g000022 Rmu_sc0000968.1_g000005 Rmu_sc0001017.1_g000028 Rmu_sc0001208.1_g000044 Rmu_sc0001526.1_g000038 Rmu_sc0002226.1_g000026 Rmu_sc0002284.1_g000006 Rmu_sc0002776.1_g000004 Rmu_sc0003369.1_g000011 Rmu_sc0003632.1_g000005 Rmu_sc0004180.1_g000007 Rmu_sc0004180.1_g000008 Rmu_sc0005014.1_g000005 Rmu_sc0005023.1_g000011 Rmu_sc0007296.1_g000009 Rmu_sc0011153.1_g000002 Rmu_sc0011153.1_g000003 Rmu_sc0018472.1_g000003 Rmu_sc0020646.1_g000001 Rmu_sc0022773.1_g000001 Rmu_sc0022773.1_g000002 Rmu_sc0023555.1_g000001 Rmu_sc0023788.1_g000001 Rmu_ssc0000409.1_g000026 Rmu_ssc0000421.1_g000039
rosa_roxburghii Rroxscaffold_2G00091530 Rroxscaffold_5G00355490 Rroxscaffold_6G00405690 Rroxscaffold_6G00412290 Rroxscaffold_7G00195870
rosa_rugosa Rorug05G0244000
rosa_samantha Rh3DG075100
rosa_wichuraiana Rw0G014340 Rw1G023020 Rw2G020120 Rw2G033790 Rw2G035670 Rw3G022290 Rw3G023070 Rw3G023080 Rw4G003460 Rw4G017840 Rw4G032430 Rw5G024280 Rw5G044440 Rw6G027410 Rw7G020330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 140
AcsI RAATTY 1 cut(s) 229
AdeI CACNNNGTG 1 cut(s) 50
AfiI CCNNNNNNNGG 1 cut(s) 291
AgsI TTSAA 2 cut(s) 124, 205
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 1 cut(s) 120
AluI AGCT 1 cut(s) 120
AoxI GGCC 1 cut(s) 154
ApoI RAATTY 1 cut(s) 229
AseI ATTAAT 1 cut(s) 18
AspS9I GGNCC 1 cut(s) 155
AsuHPI GGTGA 1 cut(s) 155
BciT130I CCWGG 1 cut(s) 159
BfaI CTAG 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 155
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 3 cut(s) 13, 64, 277
BpuEI CTTGAG 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 291
Bse118I RCCGGY 1 cut(s) 86
BseBI CCWGG 1 cut(s) 159
BseDI CCNNGG 1 cut(s) 157
BseLI CCNNNNNNNGG 1 cut(s) 291
BshFI GGCC 1 cut(s) 156
BsiSI CCGG 1 cut(s) 87
BslI CCNNNNNNNGG 1 cut(s) 291
BsmI GAATGC 2 cut(s) 90, 271
BsnI GGCC 1 cut(s) 156
BspACI CCGC 1 cut(s) 140
BspANI GGCC 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 86
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 157
Bst2UI CCWGG 1 cut(s) 159
Bst6I CTCTTC 2 cut(s) 204, 246
BstAPI GCANNNNNTGC 1 cut(s) 266
BstC8I GCNNGC 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 188
BstEII GGTNACC 1 cut(s) 161
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNI CCWGG 1 cut(s) 159
BstPI GGTNACC 1 cut(s) 161
BstSCI CCNGG 1 cut(s) 157
BsuRI GGCC 1 cut(s) 156
Cac8I GCNNGC 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 1 cut(s) 155
CviAII CATG 2 cut(s) 101, 245
CviJI RGCY 5 cut(s) 68, 86, 120, 156, 196
CviKI_1 RGCY 5 cut(s) 68, 86, 120, 156, 196
DdeI CTNAG 1 cut(s) 188
DraIII CACNNNGTG 1 cut(s) 50
Eam1104I CTCTTC 2 cut(s) 204, 246
EarI CTCTTC 2 cut(s) 204, 246
Eco91I GGTNACC 1 cut(s) 161
EcoO65I GGTNACC 1 cut(s) 161
EcoRII CCWGG 1 cut(s) 157
FaeI CATG 2 cut(s) 104, 248
FaiI YATR 5 cut(s) 48, 81, 102, 246, 281
FatI CATG 2 cut(s) 100, 244
FspBI CTAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 156
HapII CCGG 1 cut(s) 87
Hin1II CATG 2 cut(s) 104, 248
HincII GTYRAC 1 cut(s) 8
HindII GTYRAC 1 cut(s) 8
HpaII CCGG 1 cut(s) 87
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 8
Hpy188III TCNNGA 1 cut(s) 238
Hpy8I GTNNAC 1 cut(s) 8
HpyAV CCTTC 2 cut(s) 28, 199
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 1 cut(s) 188
Hsp92II CATG 2 cut(s) 104, 248
KroI GCCGGC 1 cut(s) 86
KroNI GCCGGC 1 cut(s) 88
LpnPI CCDG 3 cut(s) 100, 144, 171
LweI GCATC 3 cut(s) 13, 64, 277
MaeI CTAG 1 cut(s) 69
MaeIII GTNAC 2 cut(s) 161, 296
MboII GAAGA 3 cut(s) 221, 260, 263
MluCI AATT 2 cut(s) 149, 229
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 3 cut(s) 180, 205, 213
MroNI GCCGGC 1 cut(s) 86
MseI TTAA 1 cut(s) 18
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 159
Mva1269I GAATGC 2 cut(s) 90, 271
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 266
NaeI GCCGGC 1 cut(s) 88
NgoMIV GCCGGC 1 cut(s) 86
NlaIII CATG 2 cut(s) 104, 248
NmuCI GTSAC 2 cut(s) 161, 296
PctI GAATGC 2 cut(s) 90, 271
PdiI GCCGGC 1 cut(s) 88
PshBI ATTAAT 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 157
PspEI GGTNACC 1 cut(s) 161
PspGI CCWGG 1 cut(s) 157
PspPI GGNCC 1 cut(s) 155
SaqAI TTAA 1 cut(s) 18
Sau96I GGNCC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 159
SetI ASST 5 cut(s) 74, 122, 163, 172, 216
SfaNI GCATC 3 cut(s) 13, 64, 277
SgeI CNNG 8 cut(s) 81, 99, 113, 170, 171, 250, 257, 282
SmlI CTYRAG 1 cut(s) 236
SmoI CTYRAG 1 cut(s) 236
Sse9I AATT 2 cut(s) 149, 229
SsiI CCGC 1 cut(s) 140
SspMI CTAG 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 157
TaqII GACCGA 1 cut(s) 299
TasI AATT 2 cut(s) 149, 229
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TseFI GTSAC 2 cut(s) 161, 296
Tsp45I GTSAC 2 cut(s) 161, 296
TspDTI ATGAA 3 cut(s) 89, 96, 261
VspI ATTAAT 1 cut(s) 18
XapI RAATTY 1 cut(s) 229
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.